Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 125619_IR64_OTH1218890

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

OTH

Os XI-2B: LARHA MUGAD | Os125619RS1

Os XI-1B1: IR 64 | OsIR64RS1

Chr12

9981134

9981141

SV Length:

Query Start:

Query End:

Allele sv Count:

410 bp

9033697

9034106

21

Gene_id	Chromosome	Start	End
OsIR64_12g0008760	Chr12	9031300	9039444

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
125619_117425_OTH1218350	Chr12	9981134	9981141	9276571	9276980	410
125619_125827_OTH1219920	Chr12	9981134	9981141	9127621	9128030	410
125619_127564_OTH1219440	Chr12	9981134	9981141	9067564	9067973	410
125619_127652_OTH1215140	Chr12	9981134	9981141	9150738	9151147	410
125619_132278_OTH1218610	Chr12	9981134	9981141	9728101	9728493	393
125619_132424_OTH1219090	Chr12	9981134	9981141	9106270	9106679	410
125619_Basmati1_OTH1219320	Chr12	9981134	9981141	9871355	9871764	410
125619_CN1_OTH1218930	Chr12	9981134	9981141	9110220	9110629	410
125619_D62_OTH1218960	Chr12	9981134	9981141	9218364	9218773	410
125619_FS32_OTH1219150	Chr12	9981134	9981141	9144317	9144726	410
125619_G8_OTH1218270	Chr12	9981134	9981141	9186868	9187277	410
125619_HZ_OTH1219590	Chr12	9981134	9981141	9071107	9071516	410
125619_IR64_OTH1218890	Chr12	9981134	9981141	9033697	9034106	410
125619_J4155_OTH1219700	Chr12	9981134	9981141	9308964	9309373	410
125619_J4155S_OTH1219770	Chr12	9981134	9981141	9276470	9276879	410
125619_NamRoo_OTH1218310	Chr12	9981134	9981141	9320625	9321017	393
125619_R527_OTH1218980	Chr12	9981134	9981141	8963016	8963425	410
125619_S548_OTH1219580	Chr12	9981134	9981141	9191126	9191535	410
125619_TM_OTH1218290	Chr12	9981134	9981141	9112573	9112982	410
125619_WSSM_OTH1218140	Chr12	9981134	9981141	9011596	9012005	410
125619_Y58S_OTH1220050	Chr12	9981134	9981141	9270237	9270646	410

>125619_IR64_OTH1218890
GGCCTGTTTGGTTGGGGGGAGTTTTTAGAAGGGATTGGGAGTTTAGAGGGTTGAGGCTATTAAGTGTTTTATTTTGTTGGGAGACATGACAATTTTGGTGGAATGGGGATGGGGAATTGAGCAAGGAACTCCTTCCTTTTCAACATCTGGGTAGGGGCAGGTAATTGGGAGGGAAGTCCTCCTTTACTTTTTCTAAGCAAATCTCAGCCATCCATTTTTATTAATGACCTAATCTCCAACTAAACTCTCTATCAATTTCCATCACCTCTACCAAACAAGATATTAAGATTAAAAATCAAATTCCCATCTTAATCTCATCATCAATTTCCTCGTGTAAACTCCCAATCCCCTTCCCTCGAGTTACCAAACAAGCCGTAAGGAGATACCATGAGGTACGAGGTACCATGAGG