Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 125619_IR64_INS0451720

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os XI-2B: LARHA MUGAD | Os125619RS1

Os XI-1B1: IR 64 | OsIR64RS1

Chr04

36347344

36351295

SV Length:

Query Start:

Query End:

Allele sv Count:

3902 bp

27268279

27272180

18

Gene_id	Chromosome	Start	End
OsIR64_04g0021500	Chr04	27264102	27273790

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
125619_127742_INS0437280	Chr04	36347344	36351295	28910756	28914655	3900
125619_132424_INS0450690	Chr04	36347344	36351295	29792906	29796805	3900
125619_CN1_INS0448050	Chr04	36347344	36351295	28308026	28311905	3880
125619_D62_INS0434530	Chr04	36347344	36351295	28340581	28344462	3882
125619_DG_INS0444300	Chr04	36347344	36351295	28727460	28731339	3880
125619_G8_INS0432080	Chr04	36347344	36351295	28619970	28623867	3898
125619_HZ_INS0439290	Chr04	36347344	36351295	29082423	29086322	3900
125619_II32_INS0437470	Chr04	36347344	36351295	28839350	28843229	3880
125619_IR64_INS0451720	Chr04	36347344	36351295	27268279	27272180	3902
125619_KY131_INS0471670	Chr04	36347344	36348764	29167623	29169039	1417
125619_R498_INS0442850	Chr04	36347344	36351295	27802940	27806839	3900
125619_R527_INS0439320	Chr04	36347344	36351295	28383601	28387500	3900
125619_R9311_INS0435120	Chr04	36347344	36351295	28991509	28995361	3853
125619_S548_INS0440200	Chr04	36347344	36351295	27864658	27868557	3900
125619_WSSM_INS0437170	Chr04	36347344	36351295	28471678	28475577	3900
125619_XL628S_INS0443550	Chr04	36347344	36351295	28964744	28968641	3898
125619_YX1_INS0438990	Chr04	36347344	36351295	27366336	27370235	3900
125619_ZS97RS3_INS0437130	Chr04	36347344	36351295	29178689	29182568	3880

>125619_IR64_INS0451720
GTGTAGCGCCCGTTCCGTCGTGGCGCCTAGCGGGAAAATTATCTCTTAAAAACCCTAATTGCGAAATTTGTTTCTTTGCTTGTTGTCTAGTGTCCGTGCCATCTCAAGATCTCAAATCCCCGATATATCGTCGAGTTCAATTCCGAATCTAAATCCTTCCAAATCAAATCCCTCCGCAAAAGTCTATTTTGCCTCCCCCGGGGTCGATGGGCCGAATCTCTTTCGGCCCATCTCCCCCTCCCTCTCGGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCTTCCCCTCGCTCTGCCCGCGCGTGCGCGAGCGCCGCGCCGAGCGCCCCCTCCCCCTCGCTCTCCTTCTCCCCATCCCTGGCGAGCTCCCCGCCCACGAAGCCGGCCCCGCGCGCCGTTGTTCGCGCGCGCGCCCGCGTGGTTGCCACCCGTGCCGCGCCGCCTGCGCCGTCCGCGTCACCCGGCCCCGCTGCCCTGCCGCGCCTGCAGCCGCTCGGCCCCGCAGCCAGCGCGCGTGCCCGAGCCGAGCCACTCAATCCGCCGCGCCTCCCGTTGCAAGCCGCGCGCGAGAGCCGTGGTGGCCGACCGCCTGGTCGCCACCATCGTCAGCGCCTGCCCGCGCCTGTCGCCCGTGTCACCGCCTCACCGTCATCACCGTCGTCATCGCCTCGGCCCCGCCACTCCGCGCGCAAGCCGCCAAGGGACGGAGGCAGAGCCCCTCCTCCCTCTACCACGTCGCCCCCGCTCCCCTCCTCCTTTTCCCAAAGAGGCAAGGGGCGAGCCCCCTTTCTCTCCCTCATTTTCCCCTTTTTCCCCCCGCCGGCGTCATCCTCCCTCCGTCTTGTCGCCGATTTGGCCGCGAGCGCCGAGCGCCAGCTCGCGCCTTGACCGCCCAAAGTCGGTTTCCAAACCGACATTGCCGCCCTTTAAACCCAGGCGCCCTCCCTTCCTCTTTCCCCCCAATCCTCCCCGTTTCTCGTCCGCGCCATTGCCGCCACCTCCTGTGCTCTGTCTCGCCTCCGCCGTTCATCGCCAAGCACCGGGAGAGCTGGTGCGTTCGTTGACGCGGAAGCGGAAGGGTACTCCGGGCGCTCGTCTTCCTCCTCTTCCCCGGCCCGAGGCCGGAGAGATCACTCCCGCGCCGTCAGCCTCTCGTCACAGCGCCCCGCCTCATCTCGGTAGTGCCTCCCTCCGTTCTTCCTCCTCGTTCCATCTTCCCCCCTTAGTTTTCGGTAGTAGCACGAGTAGCCTCCCCGTAGCTAGCCGGCGCCGCCCCGATCGTTGCCGCTGCTCGCCGTGTGCCCGCCACCGTCGCCGCCCGTGCTCCGTAGCACCCGCTCGTCGCCGGCCTCGCTCGGCGTAGCTCCGCCCAATCCGACGCTAGCAACGAATTCCCGTAGCCGCGTAGATGCTCTCACCGCCGGGAATTGGCCCCTCGTGACCTCGTCGCCGTTTCCCCCTTTTCCCTCCGCCGGGCGCCGCCGCCGCAATCCGCCGCCGACGGACTCCCTCCGGCGAATCCAAGCCGTTGGCTCGCTCCCTCTCATTCTCCCTCGTCATCCCGGTGTACGCCCCGTCGCCCCTCATCGTCGCAAGGCGTCCCGGAGAAACCACCGCCGCCCGCCGTCCATTCGCGGCCGGCGCCTTCGTCTTCCTCCCGCCAGCCCGCGTGGCAGCCACGTAGGCGCCACGTCGGCGCCAGCTCGGCCGAGATCAGATCAGGCCGACCCCGGTCAGCCCCTCCCGTGCGCGCGTTCCACCGCGAGCCGTGAGGCTGCGCGTGGGCCCACCGCATCCGTTCCACCGCGAACCACGCGCGTGCACCGCATCCCTTCCCCGCCCGTGCGCGTGCGCCGCGTGCTCGCTCAGCACGGTGAACCGTGTCACCGACAAGCGGGTCCCACCCGGGACCACGCGTGGTGAGCCCGGTCCACCGGCCCTCCCTCTCCTCCCCTCCCGCGCGCGCGCTTGGGCCGCCTTGGGCCGGTCGGCCCATTTAGCTCGGCCGGACCGCTCCGTTTCTCTCGGGCCGTGCCCTAGCCGCCCGAGGAAAAGTCTATTATCCCTCCCTCTTTTCTTTTCTTTTTCAAAAAGGATTTAATTAAATTCTTTTCCTTTAGACCAAAAATCCAATAATCTTAGAAATTCAATATCTTCCCAACCGTAAATCCGTTTGACTCCGTTCCACTTCCAAAATTCCTCAAATCTCGAGATCTATCTAATGGCACGCTTAGAGGTCATTAATAGGGCTTTATTTTCGCCGTTTGTTGAGTTGTCCCGTTTCGCGTGTAGTTTCGGAGCCCGAAGACCCGCAGTGCGAGGATTTTGAGGATCAAGCTCCAGATTTCAAGCAAGGCAAGCCACCTTTGAACATCTTGAGCCTATATTTGAATTTAATTATATTGCTTGAAAAATATTATGCATTGATAGGATCGCACTTAATCTGTTTGTCCCGTCTGCAAGGCAGATTGGCGGACCTACCTAGTTTGTTGCATTTGATCCTTCCTTTGTTAATTGTTATACCATGTTCCCTTGTAACCACCCAGTTGCGCCTCGGGAATCGTGCACTCTGTGCGAGTACCGACGGTCGCCTTCAAACTTCAAATCTGAGTAACAACTTGGGTAAAACTTGGGTTTTACAAAAGACTTGGAAAACCCGACACCTGGGTCGGTGCTTGCGAACTAAATGAATTTCCAAAACCGCGGACCGGGGAACGTACCGGGTGTACGGTTTTCCCGCTCTTGCACCTAAGGACCGTTTCCTTGGAATTTCATCCAAACATAAGACAAGTACGACCACATGGGTGGAATGGGACACTCCTGGCTGAGTAACTAGCTTATCAGGGGAGCCTTGATGCCGAGAGACATGTGGATTCGCCGGGGTGGTGTCGGGGAGGACCCCTGGGCTTCCTGGCACAGTATGGTCTGGGACCTAACCTGTTGTTGGTCTGGGACCCCTCTCGTCGGCATATGGTAAACCTGTGTCGGCTTTGGAAATGCCTTGTCATGAAAGCTTGGAGGTCTCCCGACGTGGCTGATCCCCACGGGCTGGGTGATCCGGGTTAGTAATGTCGTGTGGGTAAAGTGTACCCCCTCTGCAGAGGTTAACAAACTGTTCGAACAGCCGTGCCCACGGTCATGGGCGGATGTGAGGTGATTCCTAGCGTAGTTTTGTTTGACTACTGCTTGTGAAATTGCTGTTGTGGAAAGGGGTTCGATGTTTAAAAAATCTGCAGCTGATGGGATCAGCTAGGCCCGGGTGGCCGTTTGAAAGTTGTTGGCCCGGGTGGCCGTTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGATTCAATTCTAAAGACTGATACATTGCACATACTCCGACCGGACAAGATGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTTCAGAAAGGAGTTCAAATAAAATCAATTGTAAAAACAACAGCCTTTTCTTGAAGCCTGCATTAAACACTTATTTCCCATGGCTTGCTGAGTACTCCCGTACTCACCCTTGCTCTATATAAATAATCCCCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAGGAGTTCTTCCAAGAGCAAGCCGGCTACGATGAGTATTAGGGTTTCGGCCTAGTTCCCAAGTCGCGCCTGTGTTGTTTGGTCCAAGTCCTGGCTTCCATTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATAATCCGTCTTCCTGTGATAACAGCACTATTTTCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAGTTCCGGTCGGTACTAGTCCGGGGCGTGACA