Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 125619_127564_INS0453420

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os XI-2B: LARHA MUGAD | Os125619RS1

Os XI-3A: LIMA | Os127564RS1

Chr04

33731014

33731984

SV Length:

Query Start:

Query End:

Allele sv Count:

971 bp

29159963

29160933

7

Gene_id	Chromosome	Start	End
OsLima_04g0022000	Chr04	29152874	29161903

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
125619_127518_INS0441560	Chr04	33731014	33731984	28883839	28884809	971
125619_127564_INS0453420	Chr04	33731014	33731984	29159963	29160933	971
125619_127652_INS0465880	Chr04	33731014	33731984	30592819	30593795	977
125619_FH838_INS0449570	Chr04	33731014	33731984	28800099	28801069	971
125619_G630_INS0439940	Chr04	33731014	33731984	28925410	28926380	971
125619_Tumba_INS0454080	Chr04	33731014	33731984	29353279	29354248	970
125619_MH63RS3_INS0437670	Chr04	33731014	33731984	29406658	29407628	971

>125619_127564_INS0453420
tggtctgggacctaacctgttgttggtctgggacccctctcgtcggcatatggtaaacctgtgtcggctttggaaatgccttgtcatgaaagcttggaggtctcccgacgtggctgatccccacgggctgggtgatccgggttagtaatgtcgtgtgggtaaagtgtatcccctctgcagaggttaacaaactgttcgaacagccgtgcccacggtcatgggcggatgtgaggtgattcctagcgtagttttgtttgactactgcttgtgaaattgctgttgtggaaaggggttcgatgtttgaaaaatctgcagctgatgggatcagctaggcccgggtggccgtttgaaagttgttggcccgggtggccgtttgaaaagctgttggccgggtgccaaccttgattcaattctaaagactgatacattgcacatactccgaccggacaagacgcactgtcttatccgtgtcgtttgagaagcactcacttagttGttttcagaaaggagttcaaataaaatcaattgtaaaaacaacagacttttcttgaagcctgcattaaacacttatttcccatggcttgctgagtactcccgtactcacccttgctctatataaataatccccccagttgctgaagaagatgaagcggatcctgctgatgaggagttcttccaagagcaagccggctacgatgagtattagggtttcggcctagttcccaagtcgcgcctgtgttgtttggtccaagtcctggcttccgtttcccttttgtaatgcagttgtgagctcGggatctgtccgcagcccaacatgactgtacctctactctataataaagagacctctgttgctgtgataatccgtcttcctatgataacaacactattttctgggactggtatcgattaacaggttaatttggagcgtcacgggctagtttcggtcggtactagtccggggcgtgaca