Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 117534_IR64_INS1217850

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Chr12

9422167

9423126

SV Length:

Query Start:

Query End:

Allele sv Count:

957 bp

9038398

9039354

43

Gene_id	Chromosome	Start	End
OsIR64_12g0008760	Chr12	9031300	9039444

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
117534_02428_INS1215700	Chr12	9422167	9423126	9243819	9244780	962
117534_117425_INS1216610	Chr12	9422167	9423126	9281273	9282234	962
117534_125619_INS1218440	Chr12	9422167	9423126	9996410	9997371	962
117534_125827_INS1218060	Chr12	9422167	9423126	9132322	9133283	962
117534_127518_INS1217690	Chr12	9422167	9423126	9376557	9377518	962
117534_127564_INS1218020	Chr12	9422167	9423126	9072265	9073221	957
117534_127652_INS1214530	Chr12	9422167	9423126	9155414	9156375	962
117534_128077_INS1213930	Chr12	9422167	9423126	9165157	9166118	962
117534_132278_INS1216870	Chr12	9422167	9423126	9732378	9733339	962
117534_132424_INS1217350	Chr12	9422167	9423126	9110971	9111927	957
117534_Azucena_INS1215570	Chr12	9422167	9423126	9582854	9583815	962
117534_Basmati1_INS1211910	Chr12	9422167	9423126	9876057	9877018	962
117534_CN1_INS1218300	Chr12	9422167	9423126	9114921	9115877	957
117534_D62_INS1217610	Chr12	9422167	9423126	9223065	9224021	957
117534_DG_INS1218490	Chr12	9422167	9423126	9183762	9184723	962
117534_DHX2_INS1215680	Chr12	9422167	9423126	9230743	9231704	962
117534_FH838_INS1217740	Chr12	9422167	9423126	8928399	8929360	962
117534_FS32_INS1217630	Chr12	9422167	9423126	9149018	9149974	957
117534_G46_INS1218640	Chr12	9422167	9423126	9050934	9051896	963
117534_G630_INS1217750	Chr12	9422167	9423126	9052010	9052971	962
117534_G8_INS1217670	Chr12	9422167	9423126	9191569	9192525	957
117534_HZ_INS1218370	Chr12	9422167	9423126	9075808	9076764	957
117534_IR64_INS1217850	Chr12	9422167	9423126	9038398	9039354	957
117534_J4155_INS1218260	Chr12	9422167	9423126	9313665	9314621	957
117534_J4155S_INS1218480	Chr12	9422167	9423126	9281171	9282127	957
117534_Kosh_INS1215490	Chr12	9422167	9423126	9201197	9202158	962
117534_KY131_INS1215900	Chr12	9422167	9423126	9091844	9092805	962
117534_Lemont_INS1215910	Chr12	9422167	9423126	9281876	9282837	962
117534_LK638S_INS1218510	Chr12	9422167	9423126	9045288	9046249	962
117534_NamRoo_INS1216590	Chr12	9422167	9423126	9324902	9325863	962
117534_Nipponbare_INS1217540	Chr12	9422167	9423126	9811419	9812380	962
117534_R498_INS1218270	Chr12	9422167	9423126	8674216	8675177	962
117534_R527_INS1217920	Chr12	9422167	9423126	8967717	8968673	957
117534_S548_INS1218070	Chr12	9422167	9423126	9195827	9196783	957
117534_TM_INS1216280	Chr12	9422167	9423126	9117274	9118230	957
117534_WSSM_INS1217630	Chr12	9422167	9423126	9016297	9017253	957
117534_XL628S_INS1218610	Chr12	9422167	9423126	9037131	9038092	962
117534_Y3551_INS1217620	Chr12	9422167	9423126	8816265	8817226	962
117534_Y58S_INS1218640	Chr12	9422167	9423126	9274938	9275894	957
117534_ZH11_INS1216100	Chr12	9422167	9423126	9162764	9163725	962
117534_ZS97RS3_INS1218240	Chr12	9422167	9423126	9000185	9001146	962
117534_OglaRS2_INS1222200	Chr12	9422167	9423126	8574265	8575227	963
117534_MH63RS3_INS1218040	Chr12	9422167	9423126	8820299	8821260	962

>117534_IR64_INS1217850
TCCAAATTTAATTTGTGCTGTCAGATAGGCGTTAAGATTCACGATTCACGTGTGGGGGAGGAAATGAAAATGTATCCGCGCATGGGATGAGGATCGACTCATCAACCGAAGCTAGTGGTTGTGCTAGATCGTGATTTTATTTGTAATATATTAGACCTATTTCTGTATTTGAAGAGAAAAAAAACTATGTTTGAAATCTCTATTCGCTGTTATGTTCCACAAAAATTAGAAAACATAAAAATTTGTGTAACTTTTATCTTTCAGGAATCCTCGAAGATGACTGATGAGGTTCTGCTCATCTTCAGATACATCTCCATTGCTCCCAAGTCCTTTAAGCATATCAACCAAGACCTTCCTTATATTAGGGGTACGTGAAATAGACACAAAAGTTATACACTTAAAATCCCCTTGTATTGTCTTGTACAATTCATTAGCTAGAGTTGTCTTTCCAAGACAACCAACAATCGAAACCACTTTGCGTTGTTCTGATGACCAATCTTTGTGCATGATCCACTTAACGATCTTCTCCCTTGGACCATCAATCCCTACGAGCCTCTCCACCTCCTCATACAATGCCAGCAGACGGGGATCAATTTCCACCATACTTGGCTCGGAGATGAAATCATCGATCTGATACCGCTTGCGACGTTGGTCCTCCTCCATAACCCGATTCTTCAGTTCTTGGATACACTCTGTGATCTGGTGTTTTCCCCATAGCTTCTTTATCTTGCTTCCTATCTTGCGAACAAAGTTGGCATTGGCATCGCCACAACTCAACTTGTGGATGAAGAGGTCGATGCAATCCTCAATATCATAAGCTAGCTCGAGCATGTTGTTCCTCCACTCCATGGTCGGCCCATCAAGCTTGTCCTCCTTGTTCGACAGATGCTCAAGCAAGACACTGATGCTGCTGAGCTCATTCCTCAAAAAGATGATATCCTTCTTCACACTTTTGAG