Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 117534_Azucena_DEL0431990

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os cA1: N22 | OsN22RS2

Os GJ-trop1: Azucena | AzucenaRS1

Chr04

12569201

12571114

SV Length:

Query Start:

Query End:

Allele sv Count:

1907 bp

26276915

26278821

39

Gene_id	Chromosome	Start	End
OsAzu_04g0022310	Chr04	26276660	26277807

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
117534_02428_DEL0434280	Chr04	12569201	12571114	28075461	28077367	1907
117534_117425_DEL0427830	Chr04	12569201	12571114	26494687	26496593	1907
117534_125619_DEL0426740	Chr04	12569201	12571114	28681137	28683043	1907
117534_125827_DEL0426460	Chr04	12569201	12571160	29661846	29663796	1951
117534_127518_DEL0428060	Chr04	12569201	12571160	28884887	28886837	1951
117534_127564_DEL0427220	Chr04	12569201	12571160	29161011	29162961	1951
117534_127742_DEL0424650	Chr04	12569201	12571160	28914733	28916670	1938
117534_128077_DEL0430000	Chr04	12569201	12571114	26354606	26356512	1907
117534_132278_DEL0434760	Chr04	12569201	12571114	27559521	27561427	1907
117534_Azucena_DEL0431990	Chr04	12569201	12571114	26276915	26278821	1907
117534_Basmati1_DEL0429550	Chr04	12569201	12571114	26044443	26046349	1907
117534_CN1_DEL0426490	Chr04	12569201	12571160	28311983	28313933	1951
117534_D62_DEL0425670	Chr04	12569201	12571160	28344540	28346490	1951
117534_DHX2_DEL0434690	Chr04	12569201	12571114	26947672	26949578	1907
117534_G630_DEL0426070	Chr04	12569201	12571160	28926458	28928408	1951
117534_G8_DEL0423720	Chr04	12569201	12571160	28623945	28625882	1938
117534_HZ_DEL0424410	Chr04	12569201	12571160	29086400	29088337	1938
117534_IR64_DEL0421820	Chr04	12569201	12571160	27272258	27274195	1938
117534_J4155_DEL0433270	Chr04	12569201	12571114	27223923	27225829	1907
117534_J4155S_DEL0434390	Chr04	12569201	12571114	27791828	27793734	1907
117534_Kosh_DEL0435710	Chr04	12569201	12571114	27744207	27746113	1907
117534_KY131_DEL0435750	Chr04	12569201	12571114	28172783	28174689	1907
117534_Lemont_DEL0433910	Chr04	12569201	12571114	27076944	27078850	1907
117534_LJ_DEL0435250	Chr04	12569201	12571114	27075455	27077361	1907
117534_NamRoo_DEL0435360	Chr04	12569201	12571114	28031648	28033554	1907
117534_Nipponbare_DEL0434430	Chr04	12569201	12571114	27686717	27688623	1907
117534_R498_DEL0426280	Chr04	12569201	12571160	27806917	27808854	1938
117534_R527_DEL0428130	Chr04	12569201	12571160	28387578	28389515	1938
117534_R9311_DEL0425310	Chr04	12569201	12571160	28995439	28997376	1938
117534_S548_DEL0428190	Chr04	12569201	12571160	27868635	27870572	1938
117534_TM_DEL0425020	Chr04	12569201	12571160	27033252	27035202	1951
117534_Tumba_DEL0427560	Chr04	12569201	12571160	29354326	29356276	1951
117534_WSSM_DEL0424400	Chr04	12569201	12571160	28475655	28477592	1938
117534_Y3551_DEL0429450	Chr04	12569201	12571160	29148022	29149972	1951
117534_Y58S_DEL0425620	Chr04	12569201	12571114	28882633	28884539	1907
117534_YX1_DEL0421910	Chr04	12569201	12571160	27370313	27372250	1938
117534_ZH11_DEL0435260	Chr04	12569201	12571114	27233580	27235486	1907
117534_OglaRS2_DEL0439330	Chr04	12569201	12571160	24355235	24357160	1926
117534_MH63RS3_DEL0429590	Chr04	12569201	12571160	29407706	29409656	1951

>117534_Azucena_DEL0431990
CAAGGTCCAAGTGTACTGCTTCGAGGTCCTTTTATTCAATCAGTGCTTTTCGAGTTTTATGATTTATTCATGACAATACCAGCATGGACAACGTTCCGAGGGGAAAACCAGTCATTTTGATTTCTGACAGTGAAGATGGTAAACCAAATTCTTTTTCCTACTTATTCATGTCCTTTCTTCTTTGTTTCGAACTAAAATGGTGCTTACAAACCAAAAACACGGGAAATATTATTGTAGATGATGATGAAGTTGCTAAGATATATCAAAGCGTGCGCAAGTGCTCCATTGAAAGAGGTGATTATTTTCATATAAATAATTAATAAGTCCAAATGTACAGAATGTTAGGTACTGCTAGTCAGATGATGTGCTTGTCAAACTTCCAATTTCAGGTCAATATGGACCTCGCACCTTCCCTGGATTTGATAGGTAGTACTGGTATGGGACTGAACATGCAGTACAAAATTGCTCACATTGCTGTAAGCAATTTGCCTACCATTCCACTCTATGTGTATGAGATCCAGATGACTAATTTGACAAAAGGGAAAATGGTATGGTTCACAAATCTGACTGCCCTGTATTTGCATTTGTTTATACATAAATGTCCTGAGTCTAAATGTCTTGTTTATATTTTTTAGGCCTTCAGTTTGCCATTTAGCAAGCAGTACATAAACAACCACCTTTCAACACCAATTGATGATTTACTTGTGACTCTGGTTGGATCAGCTGAATCCTTTGAGATGAGACTGAAGAAATCCAAAGATAAGCGGGCTACCTTTACAACTAGATGGAACAAGTTGGTTCAAGCCAATTTATTCGAGCTTGGTGATGTTTGTGTGTTTCTGTTCACTGAAGTTGATGATGACCTATGTATTACTCTTGAGGTTCTCAACTAGTGTAATGGATGAAGAACTTTGATGTGCCCCCTCATAATGTAGTAGTATGCCCCCTCCTAGTGTAGTATCTGCACCTTATGTAATGGATACTATGCAGCAGCTTTTGTTCAACTTTAATGGAGGCCATGCAGCAGCTTATGTTCTAAGTTAAGACAATGTTATTCTGATGTAATATATTTATCATCTATTTCCCTAAAATTACCTAGTTGTTTGCATCACTTCAAATCTGATATGGCAAGTGTACAGTTTTTATGCTACTGGAGTTGTTGATTGTTGTTGGAATCACTGCTACAAAATTAAAATGGCTGCCCGTTCTGTTCTGAAAACTAAAAACATGCTACGGAAGCTTCATCTTGATTGTTGCTGGAATACTATACTTAATTGGGCTGAAAACACACAGAACAGAAGCAGCTGGCATGAATACAAATGAGTTTAAGAAACTTTAGTTGGCTGGAATACAAATGTAAGGTGCACACACAAGAGCGTCGGACGATGCAGGAACAACAGAGACCACAACAGCAGGAAGCGACGCCCGAGTATTCCGGCTGGATGCGACGGTGGATGCGGCAGGGTGGAGGCGGCGATTTTGATGCGCCTGGCGTCGTCGTGGATGAGTCGATGCGCCTGCGGATGGCTGGATGAGACAACGAGTTCTTGCGACGGCGGGATGGATGCGCCGGGGTGGAGGCTGCCGCTGTATGCGACGACGGGATGCGCCGCTATTGACGACGGGATGCGGGTTGGACGTCTGCCGCGGCGTCCTCGACGGCGGCAGACGCGTGTTCGACGCGCGGCCGCGGTGGCGTCGAGGGTACGTCGGCCGCGGGGGAATACCTGCGATGAGACGGCGGCTGCGGCGGACAAGATGAGACGCCGGCAACAGATATTGGCGCTTGGCGGCCGCCGCAGACTATTGGCTGGGATGGGCGGTGATTAACGCTACCCTAATTTGTTTAGCCCCATCATACCCTTCCTAAATCAACGGTCAGATTACATTGGTACCTCATGGTACCT