Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 117534_127742_DEL1231620

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os cA1: N22 | OsN22RS2

Os XI-1B2: PR 106 | Os127742RS1

Chr12

15695594

15696358

SV Length:

Query Start:

Query End:

Allele sv Count:

759 bp

10098533

10099291

4 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
117534_127742_DEL1231620	Chr12	15695594	15696358	10098533	10099291	759
117534_II32_DEL1230920	Chr12	15695594	15703921	8944775	8954170	9396
117534_R498_DEL1231760	Chr12	15695594	15696356	14653172	14653929	758
117534_R9311_DEL1231580	Chr12	15695594	15696358	10186995	10187752	758

>117534_127742_DEL1231620
ggccagtgaaaatcctggacaccatggagcgcaggaccaggaaccgggtaatccgtttttgcaaggtccagtggagcaaccacgccgaagaagaagctacttgggagcgtgaagacgagctgaaggcagcccatcccgatctcttcgccagttcttccgaatctcggggtcaagattccgtttaagggggtaggtttgtcgcgtcccaaaacgactctaaaatacatcctcgaaattgtgccgagaataattaaaattcatgtgaaagcctccaacaattaaaatgtgcaaatttaaaagtcaaataaggcttggaggatttttgtatatttcctaaaagcctaaaatgcgtaaataaattttagtggaattttcagagcacaaataataattgagaagaaataaacaaagtggaaaaggttttataaaaagaaaaaccctaaaagaagtcttctttccccccttcccttcttgggccggctcggcccaactccctccctctctctCctctcccccgcggcccatcggccttcccctgcgcgcgcgccgctgacgggcgggcccgcccgccaccctcgctgacgggtggggcccacccgtcatcccctacctcgcgctgctcccgccgcccgcccgtgccctagcgccgccgccgccgccgaatccgccgcatcccgccgtCcccgcgcgccataaagagggggaaatcactccccgtgattccctccctcttttcccccgcttttccctctctctctc