Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 117425_127742_DEL0430450

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os cB: ARC 10497 | Os117425RS1

Os XI-1B2: PR 106 | Os127742RS1

Chr04

13292401

13293056

SV Length:

Query Start:

Query End:

Allele sv Count:

677 bp

28909787

28910463

22

Gene_id	Chromosome	Start	End
OsPr106_04g0022670	Chr04	28906579	28916265

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
117425_117534_DEL0429500	Chr04	13292401	13293056	26889743	26890419	677
117425_125619_DEL0430090	Chr04	13292401	13293056	28680135	28680801	667
117425_125827_DEL0431450	Chr04	13292401	13293056	29656920	29657596	677
117425_127652_DEL0432060	Chr04	13292401	13293056	27505264	27505940	677
117425_127742_DEL0430450	Chr04	13292401	13293056	28909787	28910463	677
117425_D62_DEL0431820	Chr04	13292401	13293056	28339612	28340288	677
117425_G46_DEL0429440	Chr04	13292401	13293056	27885970	27886646	677
117425_G8_DEL0427070	Chr04	13292401	13293056	28619001	28619677	677
117425_HZ_DEL0430500	Chr04	13292401	13293056	29081454	29082130	677
117425_II32_DEL0427210	Chr04	13292401	13293056	28838381	28839057	677
117425_IR64_DEL0429160	Chr04	13292401	13293056	27267310	27267986	677
117425_LK638S_DEL0427770	Chr04	13292401	13293056	28836647	28837323	677
117425_R498_DEL0429130	Chr04	13292401	13293056	27801971	27802647	677
117425_R527_DEL0430270	Chr04	13292401	13293056	28382632	28383308	677
117425_R9311_DEL0431310	Chr04	13292401	13293056	28990540	28991216	677
117425_S548_DEL0430290	Chr04	13292401	13293056	27863689	27864365	677
117425_TM_DEL0432540	Chr04	13292401	13293056	27028326	27029002	677
117425_WSSM_DEL0431130	Chr04	13292401	13293056	28470709	28471385	677
117425_XL628S_DEL0429200	Chr04	13292401	13293056	28963775	28964451	677
117425_YX1_DEL0428060	Chr04	13292401	13293056	27365367	27366043	677
117425_ZS97RS3_DEL0427260	Chr04	13292401	13293056	29177720	29178396	677
117425_MH63RS3_DEL0431210	Chr04	13292401	13293056	29402780	29403456	677

>117425_127742_DEL0430450
ataatctttgcacatggtttcagatataactttacgaaacattaatgcatgcatatagcatagcatcaacaattagtttgaagaaagtgcttggaggtttcacattggcgtactgccattgccaatagtggagtaaatattttgtgacagttgaaatttgaagtacgctgtgttagtagtataagtaatatttagatattagagcttttagatggaacatatgttgggaacttccggtgggctacttttgatgttaattgatgctctatgttctttcaagtcattgacacatgatattgtaatgtttcttatggtgttatacacaccggtctattataaagtagtaatcctattatgacttatgcactactatgaatttgtaatctttctagtatatacctgtcgagaagctattatattctattatgaatttgtaatcctactttggcttgttaagaagcttttattgggagataagttcagattgctgaaggaaacagtcttaacgagcttctacgaatcgagctcgagtcgagccgagccttgatcgagctcgaaccgagcctaccttcaagctcgaaggtaatgctgggctcggctcgagctcggctcgagcctgtactgagctcgagcttaggtaggtaagctcgctcgagctcagctcgttgacagcccta