Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 02428_ZS97RS3_INS1201790

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os GJ-temp: 02428 | 02428

Os XI-1A: Zhenshan 97 | ZS97RS3

Chr12

1571801

1575391

SV Length:

Query Start:

Query End:

Allele sv Count:

3584 bp

5563250

5566833

9

Gene_id	Chromosome	Start	End
OsZS97_12G0094300	Chr12	5563257	5567003

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
02428_FH838_INS1201780	Chr12	1571801	1575391	5541018	5544601	3584
02428_LK638S_INS1201870	Chr12	1571801	1575391	5593878	5597461	3584
02428_Nipponbare_INS1200330	Chr12	1571801	1575692	5919451	5923435	3985
02428_R498_INS1202000	Chr12	1571801	1575391	5555977	5559560	3584
02428_Tumba_INS1201950	Chr12	1571801	1572624	5713457	5714281	825
02428_XL628S_INS1201860	Chr12	1571801	1575391	5585934	5589517	3584
02428_Y3551_INS1201850	Chr12	1571801	1575391	5541341	5544924	3584
02428_ZS97RS3_INS1201790	Chr12	1571801	1575391	5563250	5566833	3584
02428_MH63RS3_INS1201860	Chr12	1571801	1575391	5544583	5548166	3584

>02428_ZS97RS3_INS1201790
AGCTATAGCTACGACTTCGACGCTGGCGTTACGTCAGAAGAGGAAGGACCGACGTTATGAATTGTCGATCCGTCGTAGTAGAATTCACCATCGGGATTAAGGACTTCTTCGTTGATGAACCCCATCAGTTGTTCTTGAACAGCCGTGATAAAATCCTTGTGTGGGAGATTTTCCCTCATGTGAATACGCTATCATTCGAAAAATAATGACATATCAATATATGAAATTAATAAACAACTTAACAAATCGATACGCAATGAAATTTTGAATGGTTTATGTATACGTACATCGAGCTCTCGTATGGTGTATATTTGGTTTGATAGGCAGTGGTCATACTCGCATACGTAGTAGCCGCATAAGTTAGTTCCCTGGTCCTGCTTTGCAAACTACATGAGAAACGATGAGAGATTTAATATACTCTTTATATTAACTGTAATTAGAGATTCAATTCAATATAATTTTGGATCATGCATGTACTCACTGGAAAATGAAACCTCCATCCAAGTTTTTCTTTCCAAGTCCCGCGGACCAATTGACGGAACCAATCCCAAGCCCTACATGTGCAGTTGCTAGCTATGATTAATTAATTATTACCCGAGATCAACATAATAGCAACAGAGTCCCGTGACTTTGGAATAGATGGTATTATATTACCTGTCTATCAGTTGGAAGACCTTGTCAAAAACCTTCTCCTCTTTATTCATTGAGTCGTACACAGTGACTCTGCATGCGTCCAAGTCGAAAAAGAACAGGACCTGGTGGAATCTGGAATATGCGTGAGATGAGATAAATATCAGAATGTATATGTTATATGTATGGGAATGAAATTTGTTCGAATGACAATAAAAACTCACTCTGTGTTGTACGGCAATAGTATGAACGTCTTGAAATGCTGCTGCGTTAGGAGATGGACGAGATTGTCCTCTGTGTCTTTCTCGTACTTGTCAATCATTTCAGTGTTGATTTTCCGAGGGTCGATGAACCCAGTATCGTAAACCCCCCGCCGTCGGGCCCTTTGAATCTCCATTCTACAACAATAAAAGGAAATTATTATTGCTTACATATATGCCAGGAGCTAATTATTGAACGAAACAAATCGAACTCAAAGATACTTACAAAATCCATGCGCCCAGAAGAGAGACGTCGAGGGCGTCCAGATGGTACAGATCGAAGACATCCTTGAAATGGATCCATAGAACATCTTCTCCTTGCAAGAAATCAGGGTTTCTGATCCTCGCTCTGAACATCTCTCTACCCTTGGCACTCATTTCCATGTACCGTTCATGGAATTTGTATATTTTTGTCGGTAGGGACTGCAACTGCTCAGGCCTAACAAGTGGTTTACCGAGTTCAAACTTGTATGCCACTTCCGCCTTCGGGATTGGTGCGCCTCCAACCAACTGAGCCACAGTTAAACCGGTGTCCGAAATAAAATCCGTTATGCCAAAGTCTTCGCCGGTTACCAATGGCTCGACCACTTGGTTTGGTTGTTTTCCAAGCTGAGGAATTGGTTTGGACTTCTTGTAATAGGCTTTCCTAAGTGTTCGGTCATAGTCCGATAGCTTTAAGGCCTCCTTGTTTGTGGTGGACATTCCCTTGAAGAAATTCTTCATGCTCGGGTCAATAGGTATCTTCTTTTTAGGACTCCGAGGCTTGAGTTGCCTCTTCACTTCTCCTGCCACATAAGCGTCAAGCTCCTCTTGACTGCAATCGTACGGCGGCTCCTTGTTTTGGGTGGTGTCAACTTTGGCCTTCTTCGTTGTCCTTGTGCTGGCAGAAGGTGGAGCTTGGCGAGACCTTGTCTTGGGAGGTGCAGGCGGACACGGTGGAGGCGGAGGCGGAGGAGGCGGAGGAGCCGGAGGAGATGGTGCAGGAGGAGGTGGTGGAGGAGCCGGAGGAGATGGTGTAGGAGGACGTGGCAGAGGAACCGTTGGAGATGGTGCAGGAGGAGACGGCGGAGCCGGAGGAGATGGTGCACGAGACGCCGCTTGTCGCCCAGGGAGGATGATGTACCGCTTGCGCCATAGTATAATGGCGTGGCTTGTGTCTCGTAGATGCGTCTCACCGTCTCCTCCTGGGTAGTCCAACTCGAGGTCCTCGCACACGGCTTCCACCAGCTCAACTTCGACCCTCGAGTATCCTGCTGGAATCGGCCTGTAGTGGTAAGTCCCTGAAATGTCCGTTGGGATGGCCATTCCCGACGCCACCTTCACGTGATGAGAGGTTATCTATTAGTAATCAACCTAAGCAGCAACCTGCGGAACGTACAAGTAAAAAATCATATATTACATCGAGCATACCTTGATTGATAAGTTCTTGAAGGGAATATGCAGCACAAATGGTGTCCGTTGCATGATCTCATCAACAGGGCAGGTGGTTTTGTCCTGGGTTTGCATGGCGTCCATGCTCTGTGATCCTACCTGCCCCGTTGAGGCGCAGATACTACGATTGCCTGATGGGCTGACCATTGGAGGAGGTATGTACAGCTGGGGATCGTGTGACCGATGTGCTGCCATGCGTTCATCCACCTTCCGGGCCACCTCCTCTTGCATGCTGAGCTCGTAGCTCGATACCCTGTACTCAAGATATGCAATCTTCGCCTCGGTATCTCTCTTGCTCCTCATCCGACTCTTGTACGTGTGGATGTCCTCCTTGAATCCAATCTTCCAGGGAATCACGCCTTTCCCTCGTGTTCGTCCTGGATGCTCGGGAGTTTGTAGGGCGAGTGACAGCTCGTCCTTCTCTCTGTCGGGTCGGAACGTGCCCTGAGAAGAGGCTTTCACTGCGTCCGTTAGTCGACTGGCAGCCTTGCGTATATGATTGCTGAAGACCAGGGAGCCATCAACTGGGTTAAGCATTCCACCGTGAGCATAGTACCAGAACTTCGATCGATCCGGCCATTTAGCGGTGGCCGGTTCGATACCCCTCTCAATCATTCTTGCCTCCATCTCCTCCCACTTCGGTATTGCGACGCTATAGCCACCTGACCCCAAGTGGTGATGATACTTCTTCTTGGCAGCGTTTTCCTTGTTTTTACCATCATCGCTTGCCCTTGTTGCCCTGTCTTGTAAGCAACGAACTCGTCCCAATGATCCCTTAGCTTTGAGAATACGTCGAAGTTCGGTGTTAGTCCCTTCAGGATGTATTTCTTGTACAGATCTCCCTTGAAGCTCTGGAACTGTTCTGCCATTTTCTTAAGAGTCCACTATTTCACTATGTTCTCCATACCCATAGGGAGCGTGAACATCTCGAGCATTGTGGTCCACAGTATCTCTTTCTCTGATTCCGGGACAAAGCTATCATTATCCCCGCGTGCTCTTGTTCTACGCCAGTACACCTTGCTGACAGGCACGTTATCTCTCACAACCCAACCGCTGTGGCGTACAAAATTCTTGGCTACTTCTACCGGGGCACTAGGTCAGCCGTCTGCGTCCACCTCAGTTATGATGTGCCGACCCTCTATCTTCTTCACGGCACCTCGTTGTCCGCGTGCCCTCTTCTGTCCAGTGGAGGGACGACTTCCACTAGCCTCCTCCTCGTTCCCTTCCGCATCCCTCTCCACGTTCCCCTCCTCGTTCCCCTCC