Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 02428_127742_DEL1120820

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os GJ-temp: 02428 | 02428

Os XI-1B2: PR 106 | Os127742RS1

Chr11

12048853

12052075

SV Length:

Query Start:

Query End:

Allele sv Count:

3234 bp

13272325

13275558

13 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
02428_117534_DEL1119090	Chr11	12048853	12052075	12620030	12623263	3234
02428_127742_DEL1120820	Chr11	12048853	12052075	13272325	13275558	3234
02428_G630_DEL1121430	Chr11	12048853	12052075	13530721	13533953	3233
02428_Nipponbare_DEL1113580	Chr11	12048853	12052075	12068946	12072167	3222
02428_R498_DEL1118390	Chr11	12048853	12052075	13023883	13027116	3234
02428_R527_DEL1119950	Chr11	12048853	12052075	13319121	13322354	3234
02428_R9311_DEL1120430	Chr11	12048853	12052067	18936831	18940053	3223
02428_S548_DEL1119310	Chr11	12048853	12052075	13225096	13228329	3234
02428_Tumba_DEL1116920	Chr11	12048853	12052075	13056274	13059504	3231
02428_YX1_DEL1118220	Chr11	12048853	12052075	12795054	12798286	3233
02428_ZH11_DEL1112430	Chr11	12048853	12052075	11886316	11889537	3222
02428_OglaRS2_DEL1127180	Chr11	12048853	12049643	11730714	11731506	793
02428_MH63RS3_DEL1121830	Chr11	12048853	12052075	13303886	13307119	3234

>02428_127742_DEL1120820
aacaacatgcttagaatcagcacacaaagaaatagtagaactaacatgttcattcactagttgtggcatggatataagtgaaacattatcacacaactcttctttatcacaaggaacagcaagtaaatcaacttgtgacaaaggcaactcagcaattgattccactaatggttgctctactatagcatgaaaagtggacaagtgtagctcaccttgagaatactcaccttcatttctctcagcaccatttaatttaccttgcgaactttcttcagataatgtagctgcatcagccttctcctcattcgcgagtgatggaagtgacatctcaaacatatcgttcttctcattttggagacttttctgaacttcctgcaaaacatcagtgataggaggcacaagcatatcttgttgctccgttggattctccaaagttttgcgctcaacaatgcaagcaagcatgaacaattggcctatatgattatatgtcacattaacaagcccagcctgaatattgaaattaagccctctgaaaaatctagtcattgtgttctcattcgattcttgtaaaccactataagtgatacaaattttaaaatcatgaaagtactccctaacagttttgtcaccttgttttagatgttcccatttctcaaggagagcacgtctatagtatgaaaacacaaatctttttctcatcagtattttgcattcatcccaagtttcaagcttattccccacagtatgccaccaaaaagatgcagaaccggtacacttattactagcagccttaatcatttgagcattagaaaaatcatactcatcaaattgtttttctactgctagctcccaattaatgtatgcagcggaatcatactttccatcatagactggtaacttacatgcaacttgtgcaaaattatagtcatgtacctcatatgcatcacgtgaagaagtcgtcatatctcgtcgaaggtgtagatgttgacgttgagcatgaccatcttgtttccccttgcgcaatcctgccatggttagcagcaaacaagaaacatacacaagaatatacacgctcctatcaactactaggtagtggcagctcaaatctcacacacactcaagcttttaaccaagctcttacaagatcttaccaatgcaagtggaatggtgatgtacaccgactcaaccaagcaccccaatggaggttggatgtatcgatgccttggcaaacacttgctgtacggctgcaatcagatctgtggagctctgggtaggcttaaatatgtagcaaaggaatagcaaatgctcaaatcagagaacgcaaagttgaataattgttcaaagtcaagtaccgtgctggtcctaggctagaacgtactagagacgcgagcctagacacaaacggtaccacaaaatagcaccagaaacaactcaagcacactctgatgtatgaaagcaaactcaaagatacaactaatttttccttttgcttctttctttccttttctttcttttctattttcttttctttttcttttctctttttttttcttggtgcggcttttcttctcttttttttatgcacctttctgcctttttttttctttcttttttttattttttttaccaaaaactgactcaaggaccttaatgtaaggttacagggactcaaacgtaaatataaaatttacagggactcaaatgtaaaagtctaaacccaaaattaaaattatacaaaaaaaatggaatgctgaatatatgctgattccgtttttccaaacagatctcgaaaccgacaccaaacaaaaattcgccaaggtgtttgacacaactcggaaccgtggaagagagggagggagtcggactcgaccaaaggggcgagtgggactcggccaggaggtggagtggatggcagccgaatttggtgtatgggataaaaaggaaactgaattttaaccaatccaatctactatatctttccaaaacaaacttgactacttccaaaatcagatatggtaattcaccttcctcctctcgtgcacgacacaggcacggccaaaaaaaacacacacaaggatcggcaaactctagatgcaactcaagaactccaaaactaaccgacagaaacttctgaaaactacaaaaatagaaccgtggcagcgagccaattccgtttttgtaggtcccgacaacaacagagacacggtggcagcgacgactgtggtacaaaacgtgaccagaactcgaaactctaaacgagctagacgctaagaccagcaacacgacgtgacgatgcaacacaaaattcaacaaagcaaaaactgaaaagaacaatgcaatggcacaatatggctaggtaaatgatacgaatttttttgtatggctattttctggttataggaagataaaaactcaccgagcaacgaaagctctgataccacctgatgaaccctgagttcctcccgacactcaaggctgttgttggcccgatctttcggtgagttgtgataactacgatttgggagaaacgttgacaatccgactacaaccgtacgagacgttgtgttgcgccttagcgatcgatacacctctccgtgggttgttgatcttgccggtgcagatcaaccctattcctgcaagcaaatcgaagaaacaagcaagaacaagataaaagcaatctgatattgcaaataggaatttaatacgaatgataagttggggttccgaagaacaagcagacggacggtctagccgacacgcgcgctgcaagcaagtagcaatggctaaactttaatctaacaaaacccaagaaaccctgaaggggtacctaactatttatagaggtgggaggacgaccaagagggtccaagggtcgtgctccaccagattggggcgcaccccacatgggccccacatgggccagggtcccaaacaaagttacaagcccattggcccaatacaggtgacgcagcaccttgcttctgtgattgcggccaaacaagatagaattccgagatgaggctggatccgttggaaggaggacttcgagagctttccatcaagtactcacgggcgcaaaacggagcacgtatgtagattttgcgaccgtttgaagtcagcaatgtaacacgtggccgaatcagattgcagcacatggaagacttgatcttgatgtcttcttgttgattcatgatgtgagcaatggtcgtatccatagtagccatggtcacatca