Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZH11G1231324300.01 | OGI:02023525 | 12/50 | Os GJ-temp: ZH11 | ZH11 | SICAU | Chr12:9157288-9159879 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | G46_ZH11_INS1217790,R498_ZH11_INS1214940,Tumba_ZH11_INS1218600,XL628S_ZH11_INS1217970,Azucena_ZH11_INS1208510,II32_ZH11_INS1217790,117534_ZH11_INS1216090,DG_ZH11_INS1218480,ZS97RS3_ZH11_INS1217980,127742_ZH11_INS1218110,YX1_ZH11_INS1220270,125619_ZH11_INS1221760,LK638S_ZH11_INS1217840,127518_ZH11_INS1217860,132278_ZH11_INS1210620,NamRoo_ZH11_INS1210950,LJ_ZH11_INS1207420,OglaRS2_ZH11_OTH1218780,R9311_ZH11_INS1218020,
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| DNA seq | ATAATGGAATATAATCCCGGCCTTTACTCAAAGAGCTACAGCCAATCCACTGGATACATGCTTAGATACAACGGATATTTTTTCGGGGGATAAGGAAGATCATAATAACTGAGCATTAATATTTTCCTCACTCGAGCCTCTGAGTTTAGTGAAGCACCAATAGTATCATGCACTTGCACCCACTGGTCCTCTGAATCGGATTTGGTTGCTAGCAAGCTAGCTATGGAGATTATAGCTAATGGTAAACCACGACATTTCGATATGATGGCATGAGAGATGTCTTCCAGGTGAGGCGGGCAGCAATTCTCAGAATTAAAAGCTCTCCGGTAAAATAATCTCTGTGATTCTTGCTCTGCTAGTGGCTGCATGCTGTGAAGATAGCCTTCAGATGTGGTACGGCTACACGCTTTAGCTACGGCAGCGTTTCTTGTTGTTGTTATGATTATACTGCCCAAATTATTCTCTGGGAAAGCACAACTGACCACCTTCCACGCACCTATGTCCCAAATATCATCAACAACAATGAGGTACGTGAGTACAATTAAATTTATGATCCGGTCATCATACTTTCGCATCAATGTGGATGAATGATCATACATAAAAGCTAGTTACCACTCATGTAGCTAGAATATTACAATTAAGAGTGCAAAGTGTTTTATTGGGTTTGTTCTAGTTCTAGATACAACCATATCTGTCTGTACGTTTCGGATTTGCTATATATCTTGCGACAGAAAATTGAAGTTGGAAACTTCCAAATTTGAGCATCTTTTCCATCCTTAAAGGCCTGTTTGGTTGGGGAGAGTTTTTAGGATGGATTGGGAATTTAGAGGGATGAGGCTATTAAGTGTTTTATTTTGTTGGGAGACATGACAATTTTGGTGGGATGGGGATGGAGAATTGAGAAAGAAACTCCTTTCTTTTCAATACCTGGGTAGGGACAGGTAATTGGGAGGGAATTCCTCCTTTACTTTTTCTAAGCAAATCTCAGCCATCCATTTTTATTAATGACCTAATCTCCAACTAAACTCTCTTTAAATTTCCATCACCGCTACCAAACAAGATATTAGGATTAAAAATCAAATTCTCATCTTAATCTCATCATCAATTTTCTCGTGTAAACTCCCAATCCCCTTCCCTCGAGTTACCAAACAAGCCGTAAGAAGATAACATGAGGTACGAGGTACCATGAGGTATCAATCTTATCTAACCGTTGGTTTAACAGGGGTAGGATCGTCTAATGAAAATGAGGTGCCCGTGCTAATGACCGCCCACTCGGCCAATAGGGAGTTCGTCTGTGCCGCCCACTTCTTCGGCGCATCGAAGCTTCCCCGGCGCCGCCGCATCGAGCCTGTTTTCCCGCCACGGCGCCATCGCATCGACCCCGGCGCGGCTGCCGCCGCAACAAGGCCGCCGTGGCCACCGTGGCATCGAGGCCACCGCGGGCGCCGCCACATCCAGCCCGCCGCCCCGCCGTGGGCGCTGCCGCATCCAGCCTCATCGAGACAGCCGCGGCCCTCGTCTCATCGAGGGCGCTGTGCCTGCCGCCGTCCCGAGCCGGCGGCGTCCGCTGTCGCATCGAGCCGGCCGCGCCTCCCGTCGCATACAGGCCGCCGCCTGCAGCCGCATCCAGTCGCACAGTGCCGCATCCGCAGCCCCATATACCGCTGACAGTACTAATTTTGAGGACCAGCCGCAGGTAATTTGATTTGTGCTGCATCTGATAATGTGTGGTAGATTAGGAAGCTCTAGTTTTTATGATTGACAGCAATGCTTGAAGTAATCAAGGTGGTCCTTTTTTTGGGCAGGTTCATTGCGCCGTGTAAAATGGAAGCAGTTGGTAGCAGTATTGAGGAGGAAGAGTATGCTCTACTATTATGGGCATGAAATTTCCTAGTGAGTATCATGGTTTTCAATTCTACAATCAGTATGCTAGAGAGAGAGGATTTAGGAAGGAGGTATATATGGACAGTTCTAACAGAACTAGGGAGCCACGGGCATTATCTCGCTGTGGTTGCAAAGCTCAATTTGAGATAAAACATGATGAGGAAAAAGGAAATTGGTATGTCGTTAGGTTTGAATCGAATCATAACCATCCGTTGTGTAAAGCTGATCAAGTGCCATTTTTGCGCTCACATCGTAGAATAACTCCTGCAGCACAGGCTAAGATGGTGGAATTGAGAGATGTTGGTTTGCATCAGCATCAAGTGATGGATATAATGGAGAGAGACCATGGTGGTTATGAGGCTACTGGTTTTACTTCCAGGGACATGTACAATTTTTTTGTGAAGCTGAAGAAGAAACATATTAAAGGTGGAGATGCTGACCATGCTATTAATATTGAGTATTGCTGTTCCTGTAATGAGATGGTTTTATAACCTCGTTGGTTTGATTTGGTTCCTGTAAGGAGATGCTTAGATAACCTCTTTGGAAACCTTGTTTTTCCTGTAAGAGTGCCTTGATGACCTTGATGATTCCTATAAGAGGAGTACCTTGATGACCTTGATGATTTTGTTCTTTCATTTACTGTGATGATGTGGTGTGAGCAGAAATTATTACAGTGCGCACGCAAGTAGCTCTGTTTGTTTGCAAACA
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| CDS seq | MTAHSANREFVCAAHFFGASKLPRRRRIEPVFPPRRHRIDPGAAAAATRPPWPPWHRGHRGRRHIQPAAPPWALPHPASSRQPRPSSHRGRCACRRPEPAASAVASSRPRLPSHTGRRLQPHPVAQCRIRSPIYR |
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| Protein seq | MTAHSANREFVCAAHFFGASKLPRRRRIEPVFPPRRHRIDPGAAAAATRPPWPPWHRGHRGRRHIQPAAPPWALPHPASSRQPRPSSHRGRCACRRPEPAASAVASSRPRLPSHTGRRLQPHPVAQCRIRSPIYR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZH11G1231324300.01 | OsZH11G1231324300.01.T04 | Chr12 | 9158548 | 9159879 | + | IGDBv1 | ||
| CDS seq | ATGACCGCCCACTCGGCCAATAGGGAGTTCGTCTGTGCCGCCCACTTCTTCGGCGCATCGAAGCTTCCCCGGCGCCGCCGCATCGAGCCTGTTTTCCCGCCACGGCGCCATCGCATCGACCCCGGCGCGGCTGCCGCCGCAACAAGGCCGCCGTGGCCACCGTGGCATCGAGGCCACCGCGGGCGCCGCCACATCCAGCCCGCCGCCCCGCCGTGGGCGCTGCCGCATCCAGCCTCATCGAGACAGCCGCGGCCCTCGTCTCATCGAGGGCGCTGTGCCTGCCGCCGTCCCGAGCCGGCGGCGTCCGCTGTCGCATCGAGCCGGCCGCGCCTCCCGTCGCATACAGGCCGCCGCCTGCAGCCGCATCCAGTCGCACAGTGCCGCATCCGCAGCCCCATATACCGCTGA
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| Protein seq | MTAHSANREFVCAAHFFGASKLPRRRRIEPVFPPRRHRIDPGAAAAATRPPWPPWHRGHRGRRHIQPAAPPWALPHPASSRQPRPSSHRGRCACRRPEPAASAVASSRPRLPSHTGRRLQPHPVAQCRIRSPIYR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: J4155S | J4155S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: LK638S | LK638S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: XL628S | XL628S | PKU | NA | NA | NA | NA | NA |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1223973300.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | NA | NA | NA | NA | NA |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: D62 | D62 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: DG | DG | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1232961500.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1231836500.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: G46 | G46 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1218646900.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1235915500.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1233927100.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1223914700.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | NA | NA | NA | NA | NA |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1221265900.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | NA | NA | NA | NA | NA |
| Os XI-2: TM | TM | SICAU | NA | NA | NA | NA | NA |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1226928700.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1227490700.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0413099500.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | NA | NA | NA | NA | NA |
