Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsG630G1218646900.01 | OGI:02023525 | 12/50 | Os XI-adm: G630 | G630 | SICAU | Chr12:9046534-9049125 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | XL628S_G630_INS1209950,ZS97RS3_G630_INS1209970,117534_G630_INS1217740,125619_G630_INS1218840,DG_G630_INS1210450,R498_G630_INS1207090,LK638S_G630_INS1209920,LJ_G630_INS1219040,Azucena_G630_INS1217740,OglaRS2_G630_OTH1218900,R9311_G630_INS1208460,G46_G630_INS1209740,II32_G630_INS1207090,132278_G630_INS1218620,127742_G630_INS1207450,NamRoo_G630_INS1216730,Tumba_G630_INS1210470,YX1_G630_INS1209150,127518_G630_INS1206520,
More
|
||||||||||
| DNA seq | ATAATGGAATATAATCCCGGCCTTTACTCAAAGAGCTACAGCCAATCCACTGGATACATGCTTAGATACAACGGATATTTTTTCGGGGGATAAGGAAGATCATAATAACTGAGCATTAATATTTTCCTCACTCGAGCCTCTGAGTTTAGTGAAGCACCAATAGTATCATGCACTTGCACCCACTGGTCCTCTGAATCGGATTTGGTTGCTAGCAAGCTAGCTATGGAGATTATAGCTAATGGTAAACCACGACATTTCGATATGATGGCATGAGAGATGTCTTCCAGGTGAGGCGGGCAGCAATTCTCAGAATTAAAAGCTCTCCGGTAAAATAATCTCTGTGATTCTTGCTCTGCTAGTGGCTGCATGCTGTGAAGATAGCCTTCAGATGTGGTACGGCTACACGCTTTAGCTACGGCAGCGTTTCTTGTTGTTGTTATGATTATACTGCCCAAATTATTCTCTGGGAAAGCACAACTGACCACCTTCCACGCACCTATGTCCCAAATATCATCAACAACAATGAGGTACGTGAGTACAATTAAATTTATGATCCGGTCATCATACTTTCGCATCAATGTGGATGAATGATCATACATAAAAGCTAGTTACCACTCATGTAGCTAGAATATTACAATTAAGAGTGCAAAGTGTTTTATTGGGTTTGTTCTAGTTCTAGATACAACCATATCTGTCTGTACGTTTCGGATTTGCTATATATCTTGCGACAGAAAATTGAAGTTGGAAACTTCCAAATTTGAGCATCTTTTCCATCCTTAAAGGCCTGTTTGGTTGGGGAGAGTTTTTAGGATGGATTGGGAATTTAGAGGGATGAGGCTATTAAGTGTTTTATTTTGTTGGGAGACATGACAATTTTGGTGGGATGGGGATGGAGAATTGAGAAAGAAACTCCTTTCTTTTCAATACCTGGGTAGGGACAGGTAATTGGGAGGGAATTCCTCCTTTACTTTTTCTAAGCAAATCTCAGCCATCCATTTTTATTAATGACCTAATCTCCAACTAAACTCTCTTTAAATTTCCATCACCGCTACCAAACAAGATATTAGGATTAAAAATCAAATTCTCATCTTAATCTCATCATCAATTTTCTCGTGTAAACTCCCAATCCCCTTCCCTCGAGTTACCAAACAAGCCGTAAGAAGATAACATGAGGTACGAGGTACCATGAGGTATCAATCTTATCTAACCGTTGGTTTAACAGGGGTAGGATCGTCTAATGAAAATGAGGTGCCCGTGCTAATGACCGCCCACTCGGCCAATAGGGAGTTCGTCTGTGCCGCCCACTTCTTCGGCGCATCGAAGCTTCCCCGGCGCCGCCGCATCGAGCCTGTTTTCCCGCCACGGCGCCATCGCATCGACCCCGGCGCGGCTGCCGCCGCAACAAGGCCGCCGTGGCCACCGTGGCATCGAGGCCACCGCGGGCGCCGCCACATCCAGCCCGCCGCCCCGCCGTGGGCGCTGCCGCATCCAGCCTCATCGAGACAGCCGCGGCCCTCGTCTCATCGAGGGCGCTGTGCCTGCCGCCGTCCCGAGCCGGCGGCGTCCGCTGTCGCATCGAGCCGGCCGCGCCTCCCGTCGCATACAGGCCGCCGCCTGCAGCCGCATCCAGTCGCACAGTGCCGCATCCGCAGCCCCATATACCGCTGACAGTACTAATTTTGAGGACCAGCCGCAGGTAATTTGATTTGTGCTGCATCTGATAATGTGTGGTAGATTAGGAAGCTCTAGTTTTTATGATTGACAGCAATGCTTGAAGTAATCAAGGTGGTCCTTTTTTTGGGCAGGTTCATTGCGCCGTGTAAAATGGAAGCAGTTGGTAGCAGTATTGAGGAGGAAGAGTATGCTCTACTATTATGGGCATGAAATTTCCTAGTGAGTATCATGGTTTTCAATTCTACAATCAGTATGCTAGAGAGAGAGGATTTAGGAAGGAGGTATATATGGACAGTTCTAACAGAACTAGGGAGCCACGGGCATTATCTCGCTGTGGTTGCAAAGCTCAATTTGAGATAAAACATGATGAGGAAAAAGGAAATTGGTATGTCGTTAGGTTTGAATCGAATCATAACCATCCGTTGTGTAAAGCTGATCAAGTGCCATTTTTGCGCTCACATCGTAGAATAACTCCTGCAGCACAGGCTAAGATGGTGGAATTGAGAGATGTTGGTTTGCATCAGCATCAAGTGATGGATATAATGGAGAGAGACCATGGTGGTTATGAGGCTACTGGTTTTACTTCCAGGGACATGTACAATTTTTTTGTGAAGCTGAAGAAGAAACATATTAAAGGTGGAGATGCTGACCATGCTATTAATATTGAGTATTGCTGTTCCTGTAATGAGATGGTTTTATAACCTCGTTGGTTTGATTTGGTTCCTGTAAGGAGATGCTTAGATAACCTCTTTGGAAACCTTGTTTTTCCTGTAAGAGTGCCTTGATGACCTTGATGATTCCTATAAGAGGAGTACCTTGATGACCTTGATGATTTTGTTCTTTCATTTACTGTGATGATGTGGTGTGAGCAGAAATTATTACAGTGCGCACGCAAGTAGCTCTGTTTGTTTGCAAACA
More
|
||||||||||
| CDS seq | MTAHSANREFVCAAHFFGASKLPRRRRIEPVFPPRRHRIDPGAAAAATRPPWPPWHRGHRGRRHIQPAAPPWALPHPASSRQPRPSSHRGRCACRRPEPAASAVASSRPRLPSHTGRRLQPHPVAQCRIRSPIYR |
||||||||||
| Protein seq | MTAHSANREFVCAAHFFGASKLPRRRRIEPVFPPRRHRIDPGAAAAATRPPWPPWHRGHRGRRHIQPAAPPWALPHPASSRQPRPSSHRGRCACRRPEPAASAVASSRPRLPSHTGRRLQPHPVAQCRIRSPIYR |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsG630G1218646900.01 | OsG630G1218646900.01.T04 | Chr12 | 9047794 | 9049125 | + | IGDBv1 | ||
| CDS seq | ATGACCGCCCACTCGGCCAATAGGGAGTTCGTCTGTGCCGCCCACTTCTTCGGCGCATCGAAGCTTCCCCGGCGCCGCCGCATCGAGCCTGTTTTCCCGCCACGGCGCCATCGCATCGACCCCGGCGCGGCTGCCGCCGCAACAAGGCCGCCGTGGCCACCGTGGCATCGAGGCCACCGCGGGCGCCGCCACATCCAGCCCGCCGCCCCGCCGTGGGCGCTGCCGCATCCAGCCTCATCGAGACAGCCGCGGCCCTCGTCTCATCGAGGGCGCTGTGCCTGCCGCCGTCCCGAGCCGGCGGCGTCCGCTGTCGCATCGAGCCGGCCGCGCCTCCCGTCGCATACAGGCCGCCGCCTGCAGCCGCATCCAGTCGCACAGTGCCGCATCCGCAGCCCCATATACCGCTGA
More
|
|||||||
| Protein seq | MTAHSANREFVCAAHFFGASKLPRRRRIEPVFPPRRHRIDPGAAAAATRPPWPPWHRGHRGRRHIQPAAPPWALPHPASSRQPRPSSHRGRCACRRPEPAASAVASSRPRLPSHTGRRLQPHPVAQCRIRSPIYR |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: J4155S | J4155S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: LK638S | LK638S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: XL628S | XL628S | PKU | NA | NA | NA | NA | NA |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1223973300.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | NA | NA | NA | NA | NA |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: D62 | D62 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: DG | DG | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1232961500.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1231836500.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: G46 | G46 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: G630 | G630 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: G8 | G8 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1235915500.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1233927100.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1223914700.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | NA | NA | NA | NA | NA |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1221265900.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | NA | NA | NA | NA | NA |
| Os XI-2: TM | TM | SICAU | NA | NA | NA | NA | NA |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1226928700.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1227490700.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0413099500.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1231324300.01 | RBH | None | None | None |
