Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Basic Info

Gene ID	OGI # \| Score	Accession \| Assembly \| Annotation	Location	Links
OsY58SG1110069900.01	OGI:06020401 \| 13/50	Os XI-1B: Y58S \| Y58S \| SICAU	Chr11:14098132-14098206	Homologues MicroCollinearity
Gene Symbol	-
Mutant	-
Stuctural Variations	Nipponbare_Y58S_TRA1128860,125827_Y58S_OTH1125330,125827_Y58S_INV1125210,G8_Y58S_OTH1119830,G8_Y58S_INV1119800,NamRoo_Y58S_INV1115810,NamRoo_Y58S_OTH1115820,ZH11_Y58S_INV1116760,R527_Y58S_INV1114200,Basmati1_Y58S_DEL1121780,J4155S_Y58S_INV1130670,02428_Y58S_DEL1132870,02428_Y58S_INV1119730,II32_Y58S_OTH1126100,II32_Y58S_DEL1126130,II32_Y58S_TRA1125890,II32_Y58S_INS1126110,132278_Y58S_INV1118310,132278_Y58S_OTH1118540,D62_Y58S_INV1120050_9,LK638S_Y58S_INV1128590,128077_Y58S_DEL1121370,128077_Y58S_INV1120110,MH63RS3_Y58S_INV1113290,Tumba_Y58S_INV1114450,CN1_Y58S_OTH1126310,CN1_Y58S_INV1126170,XL628S_Y58S_INV1131840,YX1_Y58S_INV1115070,TM_Y58S_OTH1122860,DHX2_Y58S_INV1117060,J4155_Y58S_INV1119960,Lemont_Y58S_OTH1116760,Lemont_Y58S_INV1116380,ZS97RS3_Y58S_INV1131380,FH838_Y58S_OTH1126400,FH838_Y58S_INV1126330,125619_Y58S_OTH1122980,125619_Y58S_INV1122810,R9311_Y58S_INV1110980,IR64_Y58S_OTH1119250,FS32_Y58S_INV1121140_1,R498_Y58S_INV1112620,WSSM_Y58S_OTH1121810,WSSM_Y58S_INV1121770,DG_Y58S_OTH1125020,DG_Y58S_INV1124620_4,HZ_Y58S_INV1129900,G46_Y58S_INV1120850,127518_Y58S_TRA1121400,127742_Y58S_INV1115060, More
DNA seq	TGGATTAATCATGCCGATCATATCAATTCCCCAACCTCTAAATGGCCATGGCTTAATGATAGGATTCATAGCTGA
CDS seq	WINHADHINSPTSKWPWLNDRIHS
Protein seq	WINHADHINSPTSKWPWLNDRIHS
Function	-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsY58SG1110069900.01	OsY58SG1110069900.01.T01	Chr11	14098132	14098206	+	IGDBv1
CDS seq	TGGATTAATCATGCCGATCATATCAATTCCCCAACCTCTAAATGGCCATGGCTTAATGATAGGATTCATAGCTGA
Protein seq	WINHADHINSPTSKWPWLNDRIHS

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	None	None	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| MSU	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| RAP-db	NA	NA	NA	NA	NA
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Minghui 63 \| MH63RS3 \| HZAU	NA	NA	NA	NA	NA
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Zhenshan 97 \| ZS97RS3 \| HZAU	NA	NA	NA	NA	NA
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Os XI: R9311 \| R9311 \| AGIS	NA	NA	NA	NA	NA
Os XI-adm: HZ \| HZ \| PKU	NA	NA	NA	NA	NA
Os XI-adm: J4155S \| J4155S \| PKU	NA	NA	NA	NA	NA
Os XI-adm: LK638S \| LK638S \| PKU	NA	NA	NA	NA	NA
Os XI-adm: XL628S \| XL628S \| PKU	NA	NA	NA	NA	NA
Os GJ-temp: 02428 \| 02428 \| SICAU	Os02428G0406342100.01	SBH	None	None	None
Os cB: Basmati1 \| Basmati1 \| SICAU	OsBasmati1G1032902400.01	SBH	None	None	None
Os O.glaberrima: Ogla \| OglaRS2 \| DIADE	NA	NA	NA	NA	NA
Os XI-1A: CN1 \| CN1 \| SICAU	OsCN1G0824781500.01	SBH	None	None	None
Os XI-1A: D62 \| D62 \| SICAU	OsD62G1133349200.01	RBH	None	None	None
Os XI-1A: DG \| DG \| SICAU	OsDGG0920035900.01	SBH	None	None	None
Os GJ-temp: DHX2 \| DHX2 \| SICAU	OsDHX2G0202685800.01	RBH	None	None	None
Os XI-adm: FH838 \| FH838 \| SICAU	OsFH838G0202309100.01	RBH	None	None	None
Os XI-1A: FS32 \| FS32 \| SICAU	OsFS32G1122554800.01	RBH	None	None	None
Os XI-1A: G46 \| G46 \| SICAU	NA	NA	NA	NA	NA
Os XI-adm: G630 \| G630 \| SICAU	OsG630G1117715800.01	SBH	None	None	None
Os XI-1B: G8 \| G8 \| SICAU	OsG8G0818507900.01	SBH	None	None	None
Os XI-1A: II32 \| II32 \| SICAU	OsII32G0103172800.01	RBH	None	None	None
Os XI-1B: J4155 \| J4155 \| SICAU	OsJ4155G0818406700.01	SBH	None	None	None
Os GJ-temp: Kosh \| Kosh \| SICAU	OsKoshG0202680000.01	RBH	None	None	None
Os GJ-temp: KY131 \| KY131 \| SICAU	NA	NA	NA	NA	NA
Os GJ-trp: Lemont \| Lemont \| SICAU	NA	NA	NA	NA	NA
Os GJ-adm: LJ \| LJ \| SICAU	OsLJG0508537800.01	RBH	None	None	None
Os GJ-sbtrp: NamRoo \| NamRoo \| SICAU	OsNamRooG0406957700.01	SBH	None	None	None
Os XI-1B: R498 \| R498 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: R527 \| R527 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: S548 \| S548 \| SICAU	OsS548G1039812900.01	SBH	None	None	None
Os XI-2: TM \| TM \| SICAU	TMG1026449500.01	SBH	None	None	None
Os XI-3: Tumba \| Tumba \| SICAU	OsTumbaG1124639200.01	RBH	None	None	None
Os XI-adm: WSSM \| WSSM \| SICAU	OsWSSMG0813412900.01	SBH	None	None	None
Os XI-1B: Y3551 \| Y3551 \| SICAU	OsY3551G1125166100.01	RBH	None	None	None
Os XI-1B: Y58S \| Y58S \| SICAU	OsY58SG0820486200.01	RBH	None	None	None
Os XI-adm: YX1 \| YX1 \| SICAU	OsYX1G1130119800.01	RBH	None	None	None
Os GJ-temp: ZH11 \| ZH11 \| SICAU	OsZH11G0202718800.01	RBH	None	None	None

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