Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Basic Info

Gene ID	OGI # \| Score	Accession \| Assembly \| Annotation	Location	Links
OsXL628S_12g0076400	OGI:12049514 \| 2/50	Os XI-adm: XL628S \| XL628S \| PKU	Chr12:5612780-5613019	Homologues MicroCollinearity
Gene Symbol	-
Mutant	-
Stuctural Variations	125619_XL628S_INS1207190,NamRoo_XL628S_OTH1207020,127518_XL628S_OTH1204250,127518_XL628S_INV1204240,Lemont_XL628S_OTH1208510,ZH11_XL628S_OTH1209080,WSSM_XL628S_OTH1203380,WSSM_XL628S_INV1203370,LJ_XL628S_OTH1208620,117425_XL628S_INV1208410,117425_XL628S_OTH1208420,132278_XL628S_OTH1208250,Tumba_XL628S_INS1203170,DHX2_XL628S_OTH1209260,127652_XL628S_OTH1207490,127652_XL628S_INV1207480,125827_XL628S_OTH1204550,125827_XL628S_INV1204540,Y58S_XL628S_OTH1203950,Y58S_XL628S_INV1203940,132424_XL628S_OTH1203900,132424_XL628S_INV1203890,G630_XL628S_OTH1204110,G630_XL628S_INV1204100,TM_XL628S_OTH1205480,TM_XL628S_INV1205470,J4155_XL628S_OTH1203500,J4155_XL628S_INV1203490,Azucena_XL628S_OTH1209110,D62_XL628S_OTH1204040,D62_XL628S_INV1204030,OglaRS2_XL628S_OTH1209870,02428_XL628S_OTH1209170,Kosh_XL628S_OTH1208940,FS32_XL628S_OTH1203080,FS32_XL628S_INV1203070,CN1_XL628S_OTH1202890,CN1_XL628S_INV1202880,Basmati1_XL628S_INV1208420,Basmati1_XL628S_OTH1208430,KY131_XL628S_OTH1209060,128077_XL628S_OTH1208320,J4155S_XL628S_OTH1203440,J4155S_XL628S_INV1203430,117534_XL628S_OTH1208560,G8_XL628S_INS1203780, More
DNA seq	TCATCCCCTTCCCGGTTGGCCTCCCCTTCCCATCCGACGGCAGGGCCGTGCGCGGCGGTGGCTGGCGGCGGCCGGCGGGGCCGCGCCCGGCGGAGGGCGGCAGGCCGCTGGGCCTCGGGCGGCGGCAACCGTGGCGGGTGGCGGATGGCGGGGCCACAGCCGCGGCGGGTGGCGGGCGGTGGGGCCTCGGCCGGCAGGGCTGCGCCCGTCGTTCGTGGCGACCGGCGGCGGCAGCGGCAT
CDS seq	MPLPPPVATNDGRSPAGRGPTARHPPRLWPRHPPPATVAAARGPAACRPPPGAAPPAAASHRRARPCRRMGRGGQPGRG
Protein seq	MPLPPPVATNDGRSPAGRGPTARHPPRLWPRHPPPATVAAARGPAACRPPPGAAPPAAASHRRARPCRRMGRGGQPGRG
Function	-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsXL628S_12g0076400	OsXL628S_12g0076400.10	Chr12	5612780	5613019	-	.
CDS seq	ATGCCGCTGCCGCCGCCGGTCGCCACGAACGACGGGCGCAGCCCTGCCGGCCGAGGCCCCACCGCCCGCCACCCGCCGCGGCTGTGGCCCCGCCATCCGCCACCCGCCACGGTTGCCGCCGCCCGAGGCCCAGCGGCCTGCCGCCCTCCGCCGGGCGCGGCCCCGCCGGCCGCCGCCAGCCACCGCCGCGCACGGCCCTGCCGTCGGATGGGAAGGGGAGGCCAACCGGGAAGGGGATGA More
Protein seq	MPLPPPVATNDGRSPAGRGPTARHPPRLWPRHPPPATVAAARGPAACRPPPGAAPPAAASHRRARPCRRMGRGGQPGRG

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	None	None	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| MSU	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| RAP-db	NA	NA	NA	NA	NA
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Minghui 63 \| MH63RS3 \| HZAU	NA	NA	NA	NA	NA
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Zhenshan 97 \| ZS97RS3 \| HZAU	NA	NA	NA	NA	NA
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Os XI: R9311 \| R9311 \| AGIS	NA	NA	NA	NA	NA
Os XI-adm: HZ \| HZ \| PKU	OsHZ_12g0157200	RBH	None	None	None
Os XI-adm: J4155S \| J4155S \| PKU	NA	NA	NA	NA	NA
Os XI-adm: LK638S \| LK638S \| PKU	NA	NA	NA	NA	NA
Os XI-adm: XL628S \| XL628S \| PKU	NA	NA	NA	NA	NA
Os GJ-temp: 02428 \| 02428 \| SICAU	NA	NA	NA	NA	NA
Os cB: Basmati1 \| Basmati1 \| SICAU	NA	NA	NA	NA	NA
Os O.glaberrima: Ogla \| OglaRS2 \| DIADE	NA	NA	NA	NA	NA
Os XI-1A: CN1 \| CN1 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: D62 \| D62 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: DG \| DG \| SICAU	NA	NA	NA	NA	NA
Os GJ-temp: DHX2 \| DHX2 \| SICAU	NA	NA	NA	NA	NA
Os XI-adm: FH838 \| FH838 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: FS32 \| FS32 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: G46 \| G46 \| SICAU	NA	NA	NA	NA	NA
Os XI-adm: G630 \| G630 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: G8 \| G8 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: II32 \| II32 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: J4155 \| J4155 \| SICAU	NA	NA	NA	NA	NA
Os GJ-temp: Kosh \| Kosh \| SICAU	NA	NA	NA	NA	NA
Os GJ-temp: KY131 \| KY131 \| SICAU	NA	NA	NA	NA	NA
Os GJ-trp: Lemont \| Lemont \| SICAU	NA	NA	NA	NA	NA
Os GJ-adm: LJ \| LJ \| SICAU	NA	NA	NA	NA	NA
Os GJ-sbtrp: NamRoo \| NamRoo \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: R498 \| R498 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: R527 \| R527 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: S548 \| S548 \| SICAU	NA	NA	NA	NA	NA
Os XI-2: TM \| TM \| SICAU	NA	NA	NA	NA	NA
Os XI-3: Tumba \| Tumba \| SICAU	NA	NA	NA	NA	NA
Os XI-adm: WSSM \| WSSM \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: Y3551 \| Y3551 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: Y58S \| Y58S \| SICAU	NA	NA	NA	NA	NA
Os XI-adm: YX1 \| YX1 \| SICAU	NA	NA	NA	NA	NA
Os GJ-temp: ZH11 \| ZH11 \| SICAU	NA	NA	NA	NA	NA

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