Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsR498G1221119900.01 | OGI:12019300 | 5/50 | Os XI-1B: R498 | R498 | SICAU | Chr12:5573835-5578114 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | 127742_R498_INV1202880,127742_R498_OTH1202900,G630_R498_INV1204020,G630_R498_OTH1204040,Tumba_R498_INV1202660,Tumba_R498_OTH1202700,YX1_R498_INV1204350,YX1_R498_OTH1204370,G8_R498_INV1203340,G8_R498_OTH1203380,IR64_R498_INV1203580,IR64_R498_OTH1203600,DG_R498_INV1202700,DG_R498_OTH1202720,CN1_R498_INV1202660,CN1_R498_OTH1202700,FS32_R498_INV1203140,FS32_R498_OTH1203160,127652_R498_INV1207300,127652_R498_OTH1207350,D62_R498_INV1203700,D62_R498_OTH1203720,125619_R498_INV1206930,125619_R498_OTH1206970,HZ_R498_INV1203230,HZ_R498_OTH1203250,J4155S_R498_INV1204220,J4155S_R498_OTH1204240,R9311_R498_INV1202970,R9311_R498_OTH1202990,R527_R498_INV1202760,R527_R498_OTH1202780,Y58S_R498_INV1204070,Y58S_R498_OTH1204090,Basmati1_R498_TRA1237710,II32_R498_INV1202960,II32_R498_OTH1202980,TM_R498_INV1205120,TM_R498_OTH1205140,G46_R498_INV1202620,G46_R498_OTH1202640,125827_R498_INV1203730,125827_R498_OTH1203750,132424_R498_INV1203540,132424_R498_OTH1203560,J4155_R498_INV1204210,J4155_R498_OTH1204230,127518_R498_INV1204090,127518_R498_OTH1204110,S548_R498_INV1202460,S548_R498_OTH1202480,WSSM_R498_INV1202700,WSSM_R498_OTH1202750,
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| DNA seq | ACCGTTCCTCCGCCTCCTCTCCTCCTCTCGCTCCGCTCTCTCCCTGCCCAAGCGACGGCCGTCGCCGCGTGCCGCTCCCCTCATCCTCTTCTTCCCACAGGTGACGACCTCCCCCGCGCGCTCTCTGCTGCCGTGCCCGCCACCGCCCGACACGCGGGCCGCTGCCGTCGCCATCCTCTCGCTCCTGCCGCCGCATCCGCCAACAAGGAGGCCGGGACCGCCGGATCCGGTGACTCCGGCCTCCTCGCCGGCAGATCCGGCCGTTGTGAGGGGAGGGGAAGCCGGCAGCTGCCCTCTACGCCCGGCACCGCCCCTCTCTCCCTCTCCATCCTCTTCGTTTCTGGATCGGCGGACGCCTGCGATTAGGCGGCCTAGGGCTCATGGTCAACAGGGACACACCGCTGTATAGAAGTCCAGCTGCTCCGAAAGATTATCTTCACCCGCAGCCCCCTGTTGTTGCCTTGAGCTACTTGGTCAGTTGAGTGCCTTCTTCTTTAATGTTTGTTTCTCTAATTTTTGAAGAATGGTGATGGATAGAAATAGGAAATGAAAGAATGCACTTTTGACAGGTTATTGGTTATTCAAGTACACCAGAAATGACCCTATTTAGCACAAAGTTGATTGAATGATTGAGATGTATTTCTTGCTTTGTCACAGCTGTTTCACTCTCTTCGGTCATAACAAGGGAGGTGGACTTCATCATTAATTTTTTGCTTAATAATGTATTAGTAGACTTCTCCCCCTATTTTGTAAGTAATAGCTGTTGCTTAAGGCTATTGTGTAATGCTATATACAGATAGCAAGTTTGTACTTTACAAAATCCTTCCTGTAGATGGTGATTAATATCTGCTCTAGAATTTAAATAGCAGCTTTCGTTTTTCCTGCCTTGCATTCATGGTAGAGATCGCATGGACAAAGAGTTGTAACCTTTTAAGTAAACCTTTCTATTTCTGATTTACTCACCTTTTTTTTTCCCTTAGGTATATAGCTGGCCCCAAAACATATATGCTTTTCTCCAATAACAACAAATTAAGATGCATTTCATCCGTTCTTGCGCAGTTCCAGTAGAGCTAAATGAACACTGGGTTTAATTATTTTGTGCGGAACTCAACTGCAACTTAATATTTACATAAATTCAGTAACCGTTGCTTCTCCGCACACACACAACAATAAGCGTTCTTTTTGGCACAAATCTGATGATGCTTCTACAGCTTACTGCCTCTGCAGCGAAGTCTAGCCAATCTGGAAGATTGACAAAATTGATTGCTTGCAGAACAAATGAGTAAGCAGTGCAATACACCCATTCTCACTTTATCTTTACACATGGGTCTTAGTGGTGTTGTATCGGATGTTTCAGTGTATGTAATTCTAGCTGATGCCATTTTCTCTCTATTTTCTCTCTTTGTTGCAATTAGCAATGACCTGATTGGGAGAAGTAGGTAAATCTGAGCTGGCTTTGACATGTAGTAGTGTGGCTTTTGCTTCATCAAACAAGTGCATCATCATAATATGGATGTCCTGAGAGGACTGCTGGACAGGCAATGCTGCTGTGGTGGTGAAAGTATTATGCATAACATTCCTTATTTTTGCTTTCAAAATGTTAATCAGGTACATCACGATGTTTTTTCCTGTACATTTCCGATATGTGCTCTGATTACTGCCGGTAAATGCTTTTTTCCTCAATGTACAAATCATGTTGCCTCACTGTGATGCTCTGCTCATCCATTACATTGGTTATATGCCAATTGCTTTACTTCTTTATAACTCCATTGATGCGGTAGCTAATGTCATATGCTCGCAATATCTTACTTTTTACCTTCTTTGATCTAATAAATAAAGTATAACCTTGGTCTTTTTATAAAACAATCCTTTTCCAATGAGCACTTATGATAACTATGTACCTCCATGCTTGAAATAGAAGATCATGCCTTTATTAACAGTATATGCTTATGAGAACTGACATTAATTTTCCCTTAGGAATAGCTGGCTTCAAAACCCATGCCTTTTTTCCCCATAACGACAAGTTTAGATGCATTTTTCATCCTTTCTTGCACAGTTCTACTGGATCTGAACGTACCACTGGGTATTTTGTACATAATTCAAATGCGACTTAATGTTTGCATAAAATCAGTCTCCATTGAAGTGAGGTTTAATATTTATGAAATATATTATAGATGCTTGGGCATGATGTGCTGTAAATTTAGAGGGGTTAGTTTGTGCTATCTGGACGAAATGTTATATATTAGCAACAGAAAACAGCAGCCGAAATATTTTTCGTTTCAAATACTCGAGCTATATGTACTTTTTATAATATGAACATGCTGATGAGTGTTTTTGACATTGTGGCCATCTCTCCTGTGATTTTGCTCCAAATTCTAGAAATGGAGAACTTTTCCTTTACTTGAATTTCTCTGTTCCAAACTTGAATACTTAATTTAATTGTTTTTTTTCTTTTCTACCATATATCTTGTATTTTCTTTTTGGTCAGATCTATATCATAGATTACACCATTTACGATATAATTCATGTGCCTCATTCTTGGTTTCAGATTGCTCAAACTAACAGTACTACATTTGAGAGCCTCAATTTTTATTGCCATCACCTGGGTGGATGTGTGCGGTAGTTTGTGGTAAGTCCAATGAATTTGCAGTGGGAATGGACTGCTCCTGGTACATAACTTCTTCCCGAGATTGGTTTTATACCTTATATCCCTTCTTAATAAAGTGATAGTGAATACAGTTATGATTGGCCACTCCTTTGTTTTAATTTGTAAGGTCCCTGGTGGTTGCTTTTTATTTCATTTCAATAAATGATTACAGAAAAAAAATATATTGATAAAGTATATGCCATTTGTTGATTCCATTTTATTGTATAGCTTTAGAACGAGGTGGCTGAACTGACCTTCTGATTGCTTCCTACAAATGAAGACGGTTTTACAGTGTTGCTCCTCTCCCAGCCTCCCACCTTCATCACTGACCTTTCCCTGATATGCAATCTCATTTGTTTGCCATTGCCCCTGTGTTTCATAAATATATTTAATCCCTGTGATTCAGGGCTTCCTGATTTGAATTTTCAAGGAAAGCATTGACATTAGGTGGTTAATACTATCCAGCTTAACTCTCTAATCAGTCACGCGCAGTCTGGATTTAGAGTGTGTTTGGTTACTGCCCTGAGAATCACGCCTGACTCAGGCATCGATCTCAGCGTTCGACGTCGTTCGCCTTCGGCTGGATCGACCTGCTCGAGAGCACTCAGGTGAGGGCAACAACCAAACAGCCTCTTAGAAATTTATGCTTCGTATGTTCTTAGTTCAATCTATGTTTTTACTTTGTCTTGCGATTTTACAAAATGTTGTGTATAAGTTTTTAGTTCAGAATAATTAAACGAACATGGCTACTTCTATTGTTACTGACAAAATTCAGTGGCGCCCTATGTTGATTGTTTATTCTTTTGACAAGGTCGGGAGAAGTGATGGACGGAGAATATCCAGTGTCAATGTTTTTCAATTGCACTTACAAAACTTATAAAAAATGTTTGCTCACAGGCCGGCAATAGCACACGCAAATTCAACAATGTCTGCTTTTGCTGAAGGATACAAAAGTGACACCTGACATCAAGAACTACACCGACATTATTGGACAGTTCCTCCTTCAAACAAGTTCTACATTGTGACTATGAACAATACATTCATGAAGCAAGATAGAATAGTAAGCTCACTTACACTAGACAACCATTGCTCTCTTCATGCCTTTGACAAAGAAATAACATGAAATTCAAATTACAGTACTTTGCTAAGGAATATCAAAGACCTACATTCAGCCACTCATGGGAGGTCGAAAAACCATGGACATTCAAGTTGAAGCAGCAGACAGAATTTCAGTCACCCTGACTCTACATGTTTCAACACATGGTCGTTGCAACTTAAAAAAAAGGATGGGCAACTTTTGCAGCGAACAATGGCATACATCTTCGGTCCGTTTACATCTTTCACTTCCACAAGGCACCTCAACTCCAAACGACAATAGATGTCTGCTAAATGCCATGTATATCGCCTATGCTATAGTGAAATCGTCCTTTTGTTAGCACTAAATTATCCCATTCATTTTAGTGCAGCAAAACTGCAAGCCTCCTCTACCACCGTTATGCTATGCTAATTAGCTTTGCACCTTAAGCACTAATGATCAGCACTCAACTCTATTGTAAATATGCAATGCCACCTACTACTACCCGCTAATATACTTGTATATGATCTATTTATCAATGCCTGCTTCCTTTCCCTT
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| CDS seq | PFLRLLSSSRSALSLPKRRPSPRAAPLILFFPQVTTSPARSLLPCPPPPDTRAAAVAILSLLPPHPPTRRPGPPDPVTPASSPADPAVVRGGEAGSCPLRPAPPLSPSPSSSFLDRRTPAIRRPRAHGQQGHTAV |
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| Protein seq | PFLRLLSSSRSALSLPKRRPSPRAAPLILFFPQVTTSPARSLLPCPPPPDTRAAAVAILSLLPPHPPTRRPGPPDPVTPASSPADPAVVRGGEAGSCPLRPAPPLSPSPSSSFLDRRTPAIRRPRAHGQQGHTAV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsR498G1221119900.01 | OsR498G1221119900.01.T01 | Chr12 | 5573835 | 5578114 | + | IGDBv2 | ||
| CDS seq | CCGTTCCTCCGCCTCCTCTCCTCCTCTCGCTCCGCTCTCTCCCTGCCCAAGCGACGGCCGTCGCCGCGTGCCGCTCCCCTCATCCTCTTCTTCCCACAGGTGACGACCTCCCCCGCGCGCTCTCTGCTGCCGTGCCCGCCACCGCCCGACACGCGGGCCGCTGCCGTCGCCATCCTCTCGCTCCTGCCGCCGCATCCGCCAACAAGGAGGCCGGGACCGCCGGATCCGGTGACTCCGGCCTCCTCGCCGGCAGATCCGGCCGTTGTGAGGGGAGGGGAAGCCGGCAGCTGCCCTCTACGCCCGGCACCGCCCCTCTCTCCCTCTCCATCCTCTTCGTTTCTGGATCGGCGGACGCCTGCGATTAGGCGGCCTAGGGCTCATGGTCAACAGGGACACACCGCTGTATAG
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| Protein seq | PFLRLLSSSRSALSLPKRRPSPRAAPLILFFPQVTTSPARSLLPCPPPPDTRAAAVAILSLLPPHPPTRRPGPPDPVTPASSPADPAVVRGGEAGSCPLRPAPPLSPSPSSSFLDRRTPAIRRPRAHGQQGHTAV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0007540 | RBH | 7.935178 | 50.098869 | 72.432678 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G007441 | RBH | 1.025072 | 9.761168 | 9.873071 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: J4155S | J4155S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: LK638S | LK638S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: XL628S | XL628S | PKU | NA | NA | NA | NA | NA |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0100153600.01 | SBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | NA | NA | NA | NA | NA |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1132953200.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0101701700.01 | SBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1126151400.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1131877000.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0100365100.01 | SBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1124165800.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0100568500.01 | SBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1126426800.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1122944200.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1132852400.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1122876800.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1121548700.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG1130799800.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0100923900.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1144031200.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1130316400.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1120665600.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1227197100.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1131012400.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | NA | NA | NA | NA | NA |
