Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_12g0008700 | OGI:12026200 | 50/50 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr12:8947621-8951559 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | HZ_127742_DEL1204600,DG_127742_DEL1207380,IR64_127742_DEL1204470,128077_127742_DEL1217060,128077_127742_DEL1217080,G630_127742_DEL1206990,G630_127742_DEL1207010,CN1_127742_DEL1209200,R527_127742_DEL1204190,FH838_127742_DEL1208240,FH838_127742_DEL1208260,WSSM_127742_DEL1208820,OglaRS2_127742_DEL1218820,MH63RS3_127742_DEL1208160,MH63RS3_127742_DEL1208180,Basmati1_127742_DEL1218470,125619_127742_DEL1218430,DHX2_127742_DEL1217800,DHX2_127742_DEL1217820,Y58S_127742_DEL1206930,127518_127742_DEL1207920,J4155S_127742_DEL1206950,117425_127742_DEL1215270,02428_127742_DEL1217690,02428_127742_DEL1217710,LK638S_127742_DEL1206190,127652_127742_DEL1213550,D62_127742_DEL1206770,Y3551_127742_DEL1208130,Y3551_127742_DEL1208150,R498_127742_DEL1207750,Lemont_127742_DEL1218000,Lemont_127742_DEL1218020,Nipponbare_127742_DEL1219020,Nipponbare_127742_DEL1219050,FS32_127742_DEL1205950,S548_127742_DEL1205390,Kosh_127742_DEL1217450,Kosh_127742_DEL1217470,ZH11_127742_DEL1217730,ZH11_127742_DEL1217750,KY131_127742_DEL1217670,KY131_127742_DEL1217700,125827_127742_DEL1209500,132424_127742_DEL1207670,127564_127742_DEL1208190,J4155_127742_DEL1207100,132278_127742_DEL1219260,ZS97RS3_127742_DEL1206940,NamRoo_127742_DEL1217050,G8_127742_DEL1209480,XL628S_127742_DEL1206300,Azucena_127742_DEL1219660,TM_127742_DEL1208950,G46_127742_DEL1206780,
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| DNA seq | gcttgtagcattttctgatgcatttattaacttaaatagctcggcgatcgtgccatcccacgatcgagcgctctcctcgccatgcgccctacgactccatcatgcgcttcccgactgagccgcgcaatcccaaggcagaaagcacatgtccacatgacgcctactaactccgacgcgctcgcacatgaacaagcatgcgtaagagcccatggtacaaacgcacacgatccccagacacacagacatcatgtaccatgaagaaacgcagagcagaaatgggtacggtgctaactcaacaggaccatatattaaatgtttagctagcttgcactttgtctgaattcccgaatagcactgcaaaatgaagggcaatcataggtcaggtactatcagaatgcaataaacaagcatacaagtaaagctctgcagattgacagtcctatatacgagaggatgaatcaatacctggcttccagcgcttctggtttccgactatgatcagtggctactgaatatgatgctcttcagttccacctccctctgtactgccttttagctgctcctcttcatcttcctttaccatttcatcttcatagcgccttagaatttcgagagtaagacagcgagtctggatgctggccacgttcctaatggcatcttccaaagctttcacgtcccttgtagtggcatcagaacaatcaagaacgacgattagatgctggaggctggaaaggtgcacaaagctctgctcaaacccaaggttggatgctgctttttgtgcaaacaactcaatagaaagcctttggagttttggcatagcgccaggttcaaacaacaaccaatgcaggcgactatgcctgaacatcaactcctttagacagggaaatccaccacagcctacagtgagtccatcctcccagccttgggggaatattactttaagatagagaagcttgggtatacacccaaggaggttgatatctttctgatcattgcttctagtattatagaagatcacaagataggcaagattagaaagggaaaccatctgctccgaaagttttgatattccaacgccagaagtagaaagctctctgagaccgggagcactactacaacatgaatccatcaatgtatctgaaaacttggttgtaacatgtacatgtaatgattgaaggctatttttacctaactcatcgagagtcatgtaaaaggcgtccttgtacctctcgaaccttgctacatcacctccaaaaggcgtccttatgcgcagataccttagtctggtcagccgacggagctcttgtaaacattttatgctgtactctatgttgtaaaaaagagatagcatctccaaagcttgcaaaaatccaatttcatctggcaatctcattgggtaatcaacaattaggcgctctagtttttgcagtctacaaacacttgacggaatgtttatttcgttgacatgtcctcctccacgaataattagtgtttctagttgctgcagccgtccaatatccttgggcatctcggtaacatttgcaacattgagcttcagatacttcaactggaaaaggtatgttaggctgttaatatgctggctctccaggctcatgcacccatccagaaccaatacccgcagagcatggcatttcttaaattgtggtatttgctccggtttaggactgtcaaagaacagcgaacgaacatgtgagcagttgttcgtaatctccttgactattctattatctgtgccattggatgggaaccaggtcctccgaatcttcttgaaagaactccaatgctgttgttcatgcactattgtgacgaaattctgtccagttgataggctaatgataagatcaagcacaatatcgtggactcggcagcaactggccctaccatcatattggatataaactggttggatcaagcttctatttataagctcattgaagtagttctctcctacttgctcccgtgtttttcccttcgcttcaatgatgaatccttcagctatccatctccatataagttcttgtctatcaattacataatcctctggatacatgctgagatacaacagacaatttttcaggggataaggaagatcattataactgagcatcaaaatttttctcacttcgacgtctgagtttagtgtaacaccaatagaattgtgcacttgcatccactggtcctctgtatcaggtttgattgatagcaagctagctatggagattatagctaatggtaaaccacgacatttcgatatgatggcatgagagatgtcttccaggtgaggcgggcagcaactctcagaattaaaagctctccggtaaaataatctctgtgaatcttgctcttctagtggctgcatgctgtgaagatagccttcagatgtggtacggctgcatgcttcagctacggcagtgtttcttgttgttgttatgattatactgcccaaattattctctgggaaagcacaattgaccaccttccacgcacctatgtcccaaatgtcatcaacaacaatgaggtacctgcgttcaattaaatttatgattcagtcatcatactttcgcaccaatgtggatgaatgaacatacataaaagctagttaccactcatgtagccatagctaaaagactggtattgatcgaagtacagatgtttttgtggctagaatattacaattaagagtgcaaagtgttttattgggtttgttctagttctagatacaacgatatatgtctgtagatttcggatttgctatatatcttgcgacagaaaattgaagttggaaacttccaaatttaatttgtgctgtcagataggcgttaagattcacgattcacgtgtgggggaggaaaagagaatgtatccgcgcatgggatgaggatcgactcatcaaccgaagctagtggttgtgctagatcgtgattttatttgtaatatattagacctatttctgtatttgaagagaaaaataatatgtttgaaacctctatttgctgttatgttccacaaaaattagaaaacataaaaatgtgtgtaccttttatctttcaagaatcctcgaagatgactgatgaggttctgctcatcttccgatacatctccattgctcccgagtcctttaagcatatcaaccaagatcttccttatattaggggtacgtgaaatagacacaaaagttatacacttaaaatccccttgtattgtcttgtacacttcattagctagagttgtctttccaagaccacccaaaccaacaatagaaaccactttacgttgctctaatggcttgcctttggtcatgatccacttaatgatcttctcccttggaccatcaatccccacgagcctctccacctcctcatacaatgccggtagacggggatcaatttccaccacacttggctcattcctcaaaaagatgatatccttcttcacacttttgagcagcttgtactctccctcgaccaaggcggaaagcttggttagaagaggattcagcacccctactgaagcactaacaaatgctcctgccatctctgttccactctctgctgtttcatcaaccaaccatgcaacgtccagaaacaataacaagcatgaagtacataacacaaacggctagccaagacaattctccaaaagtgtatatgatgtagatgcacccaccaactgcttgattcgtgctccgcgccacgggaggagacgccgggaaaggagcgacgcacggtggaggtggcaacctgctgggagctgccgccagcagaaggaggcagagccagcctagtcgcctcgcctcgcctcgcctctaagcgacttctaggtgggttaatcggaggggaatcggtggcgagatcagcctaactcacttgattctcaccatcacaccggcagtgaggaaggagcccattaatagctttt
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| CDS seq | MAGAFVSASVGVLNPLLTKLSALVEGEYKLLKSVKKDIIFLRNEPSVVEIDPRLPALYEEVERLVGIDGPREKIIKWIMTKGKPLEQRKVVSIVGLGGLGKTTLANEVYKTIQGDFKCITFVSISRTPNIRKILVDMLKGLGSNGDVSEDEQNLISHLRGFLKDKRYLIVVDDIWDIGAWKVVNCAFPENNLGSIIITTTRNTAVAEACSRTTSEGYLHSMQPLEEQDSQRLFYRRAFNSESCCPPHLEDISHAIISKCRGLPLAIISIASLLSIKPDTEDQWMQVHNSIGVTLNSDVEVRKILMLSYNDLPYPLKNCLLYLSMYPEDYVIDRQELIWRWIAEGFIIEAKGKTREQVGENYFNELINRSLIQPVYIQYDGRASCCRVHDIVLDLIISLSTGQNFVTIVHEQQHWSSFKKIRRTWFPSNGTDNRIVKEITNNCSHVRSLFFDSPKPEQIPQFKKCHALRVLVLDGCMSLESQHINSLTYLFQLKYLKLNVANVTEMPKDIGRLQQLETLIIRGGGHVNEINIPSSVCRLQKLERLIVDYPMRLPDEIGFLQALEMLSLFYNIEYSIKCLQELRRLTRLRYLRIRTPFGGDVARFERYKDAFYMTLDELGKNSLQSLHVHVTTKFSDTLMDSCCSSAPGLRELSTSGVGISKLSEQMVSLSNLAYLVIFYNTRSNDQKDINLLGCIPKLLYLKVIFPQGWEDGLTVGCGGFPCLKELMFRHSRLHWLLFEPGAMPKLQRLSIELFAQKAASNLGFEQSFVHLSSLQHLIVVLDCSDATTRDVKALEDAIRNVASIQTRCLTLEILRRYEDEMVKEDEEEQLKGSTEGGGTEEHHIQ
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| Protein seq | MAGAFVSASVGVLNPLLTKLSALVEGEYKLLKSVKKDIIFLRNEPSVVEIDPRLPALYEEVERLVGIDGPREKIIKWIMTKGKPLEQRKVVSIVGLGGLGKTTLANEVYKTIQGDFKCITFVSISRTPNIRKILVDMLKGLGSNGDVSEDEQNLISHLRGFLKDKRYLIVVDDIWDIGAWKVVNCAFPENNLGSIIITTTRNTAVAEACSRTTSEGYLHSMQPLEEQDSQRLFYRRAFNSESCCPPHLEDISHAIISKCRGLPLAIISIASLLSIKPDTEDQWMQVHNSIGVTLNSDVEVRKILMLSYNDLPYPLKNCLLYLSMYPEDYVIDRQELIWRWIAEGFIIEAKGKTREQVGENYFNELINRSLIQPVYIQYDGRASCCRVHDIVLDLIISLSTGQNFVTIVHEQQHWSSFKKIRRTWFPSNGTDNRIVKEITNNCSHVRSLFFDSPKPEQIPQFKKCHALRVLVLDGCMSLESQHINSLTYLFQLKYLKLNVANVTEMPKDIGRLQQLETLIIRGGGHVNEINIPSSVCRLQKLERLIVDYPMRLPDEIGFLQALEMLSLFYNIEYSIKCLQELRRLTRLRYLRIRTPFGGDVARFERYKDAFYMTLDELGKNSLQSLHVHVTTKFSDTLMDSCCSSAPGLRELSTSGVGISKLSEQMVSLSNLAYLVIFYNTRSNDQKDINLLGCIPKLLYLKVIFPQGWEDGLTVGCGGFPCLKELMFRHSRLHWLLFEPGAMPKLQRLSIELFAQKAASNLGFEQSFVHLSSLQHLIVVLDCSDATTRDVKALEDAIRNVASIQTRCLTLEILRRYEDEMVKEDEEEQLKGSTEGGGTEEHHIQ |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_12g0008700 | OsPr106_12g0008700.01 | Chr12 | 8947711 | 8951559 | - | NAM | ||
| CDS seq | - |
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| Protein seq | MAGAFVSASVGVLNPLLTKLSALVEGEYKLLKSVKKDIIFLRNEPSVVEIDPRLPALYEEVERLVGIDGPREKIIKWIMTKGKPLEQRKVVSIVGLGGLGKTTLANEVYKTIQGDFKCITFVSISRTPNIRKILVDMLKGLGSNGDVSEDEQNLISHLRGFLKDKRYLIVVDDIWDIGAWKVVNCAFPENNLGSIIITTTRNTAVAEACSRTTSEGYLHSMQPLEEQDSQRLFYRRAFNSESCCPPHLEDISHAIISKCRGLPLAIISIASLLSIKPDTEDQWMQVHNSIGVTLNSDVEVRKILMLSYNDLPYPLKNCLLYLSMYPEDYVIDRQELIWRWIAEGFIIEAKGKTREQVGENYFNELINRSLIQPVYIQYDGRASCCRVHDIVLDLIISLSTGQNFVTIVHEQQHWSSFKKIRRTWFPSNGTDNRIVKEITNNCSHVRSLFFDSPKPEQIPQFKKCHALRVLVLDGCMSLESQHINSLTYLFQLKYLKLNVANVTEMPKDIGRLQQLETLIIRGGGHVNEINIPSSVCRLQKLERLIVDYPMRLPDEIGFLQALEMLSLFYNIEYSIKCLQELRRLTRLRYLRIRTPFGGDVARFERYKDAFYMTLDELGKNSLQSLHVHVTTKFSDTLMDSCCSSAPGLRELSTSGVGISKLSEQMVSLSNLAYLVIFYNTRSNDQKDINLLGCIPKLLYLKVIFPQGWEDGLTVGCGGFPCLKELMFRHSRLHWLLFEPGAMPKLQRLSIELFAQKAASNLGFEQSFVHLSSLQHLIVVLDCSDATTRDVKALEDAIRNVASIQTRCLTLEILRRYEDEMVKEDEEEQLKGSTEGGGTEEHHIQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_12g0008700 | OsPr106_12g0008700.02 | Chr12 | 8947621 | 8951518 | - | IsoSeq | ||
| CDS seq | - |
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| Protein seq | MMSVCLGIVCVCTMGSYACLFMCERVGVSRRHVDMCFLPWDCAAQSGS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.619708 | 18.236019 | 15.307595 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0270300 | RBH | 0.617404 | 1.269819 | 4.729718 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g17090 | RBH | 0.479085 | 0.674805 | 1.002374 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0270300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008950 | RBH | 0.197351 | 8.965397 | 6.821876 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009060 | RBH | 0.0 | 2.196403 | 0.982825 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009040 | RBH | 0.584897 | 7.771911 | 7.148777 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008870 | RBH | 0.017290 | 0.193562 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0133700 | RBH | 2.5910745 | 10.9820965 | 12.4318975 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008740 | RBH | 0.248909 | 1.036407 | 1.623713 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0149000 | RBH | 4.2906985 | 5.289073 | 13.6531245 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008660 | RBH | 0.220956 | 0.239663 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008920 | RBH | 0.348930 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008850 | RBH | 2.032809 | 14.624340 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008840 | RBH | 0.633953 | 0.0 | 1.653454 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008950 | RBH | 0.075801 | 3.650937 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008730 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008660 | RBH | 0.000000 | 8.758652 | 6.816113 |
| Os XI: R9311 | R9311 | AGIS | R9311C12g38983 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_12g0098600 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_12g0103200 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_12g0101500 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_12g0103100 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1223972200.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1237799400.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_031441 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1233870800.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1235992600.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1227309200.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1232958800.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1231834000.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1225695200.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1222575000.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1218645800.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1227584600.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1235913000.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1223628800.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1233924400.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1219087800.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1223911600.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1225068600.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG1232107000.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1221264600.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G1223517800.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1245338600.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1231560400.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1226926000.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1221844200.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1227487600.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1229776600.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1232320400.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1231321600.01 | RBH | None | None | None |
