Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsMH63_12G0268600 OGI:12053410 | 50/50 Minghui 63 | MH63RS3 | HZAU Chr12:18898223-18901037
Gene Symbol OsTZF4,OsC3H67,OsCCCH-Zn-7,C3H67
Mutant -
Stuctural Variations

-

DNA seq

GCATCAAAACCTTTTCACCTCCATCAAAAATAAAACCCACCCATATCACCTCTTTGGTTCAAGCAAAATTGTGACAAGCCTCAACAAAAAATTACCTTCTCTCAAGGTGCAAAGCTGTAAAAAAAAACTGAGTAAAAACCCCATTTTACCCTTGTTCCCATAAAGCAAAGAGAAGGGGAAAAAAGTGTTGTGTCTGTAAGTAAAGCCAAGAGCTCACTAAACCTAGTTTTGCCCAAAAACCCAGAGAGAGGAGGCTCCAAAGCAAAAGCCTCACTCCCTTTCCCCATCTCCTCCCTCCTCTTCGCCATTTCGTCGAACACCTTCTCCGATCGCGCGCCGCCGCCGCCGATGGGGGAGCCTGGGGGCGCCGAGGCGGCCGTCTCCGCGAGGCTGCTCGAGCTGGCGGCCGACGACAACGCGGCGGGGCTCGGGGAGCTCCTCGCGGCGTGGCCCTCCCTCGCCGACGAGCCCGCGCCGTGGTACACCCCGGCGCGGGGCGCGGAGCCGCTGACCCCGCTCATGGTCGCCGCCGTGTACGGCTCGGTGGGCTGCCTCGACGCGCTCCTCTCGCCGCCCTACCTCGTGGACCCCAACCGCGCCTCGGCGTCGTCGCTCTCCACCCCGCTCCACCTCGCCGCCGCGGGCGGGTCCGCCTCCGCCCCCGCGGCGGTCTCCCGCCTCCTCGCCGCCGGCGCCGACCCGGCCCTCCTCGACCACCTCCAGCGCCGGGCGTCCGACCTCGTCGCGCTCCCGCCCAACTCGCTCCCGCTCAAGAACCACCTCCTCTCCCTCCTCGGCGCCCGCAAGGAGTGGCCTCCCGACCCCTCCCTCCCCGACATCAAGAACGGCGCCTACGCCTCCGACGACTTCAGGATGTACTCGTTCAAGGTGCGCGCGTGCTCGCGGGCCTACTCCCATGACTGGACGGAGTGCCCCTTCGTCCACCCCGGCGAGAACGCGCGGCGGCGCGACCCGAGGAAGTACCACTACAGCTGCGTGCCGTGCCCGGAGTTCAAGAAGGGGGCCGGGTGCAGGAGAGGGGACATGTGCGAGTACGCGCACGGGGTGTTCGAGAGCTGGCTCCACCCGGCGCAGTACCGGACGCGCCTCTGCAAGGACGGCGTCGGCTGCGCCCGCCGCGTCTGCTTCTTCGCCCACACGCCCGACGAGCTCCGCCCGCTCTACGTCTCCACGGGCTCCGCCGTGCCGTCGCCGCGCGGGGCGTTGGAGATGGCGGCGGCGGCGGCGGCGATGGGGATGGGGCTGTCGTCGCCGGGGTCGTCGTCGTTCACGCCGCCGCTATCGCCGTCGGCCGGCGGGGGCGGGGGCGGGGGCGGCGGCGGCGGCGGCGCGTGGCCGCAGCAGCCGAGCGTGCCGGCGCTCTGCCTGCCCGGGAGCGCCGGGAACCTCCACCTGAGCCGGCTGCGCACGTCGCTGAGCGCGCGCGACATGGCCGTCGACGAGCTGCTCGCCGCGGCGGCGGCGGCGGCGGACTACGACGGCCTCGTCGCCTCCCCCGCCTCCATCCGGTCCGCGAGGGGGAAGGCGCTTGTGCCGTCAAATCTCGACGAGCTCTTCTCCGCTGAGCTCGCCGCCGCCGCGGCGTCGCGCTCGCCGCGCTACGCCGACCAAGGCGGCGCCGCGTTCTCCCCGACCCGCAAGGCCGCCGTGCTCAACCAATTCCAGCAGCAGCAGCAGCAGAGCTTGCTCTCGCCGCGGGCGGCCGCGGTGACACCAGAGCCGGTCTCCCCAATGAGCTCCCGCCTCCTCGCCGCGCTGGCGCAGCGGGAGAAGATGCAGCAGCAGACGCTGCGGAGCATGAGCTCACGGGACCTCGGCAACGCCGCGTCGCTGCTGGTCGGCTCGCCGGTGAGCTCGAGCATGTCCAAATGGGGGTTCCCCTCCGGCAACCCGGACTGGGGCGCCGACGACGAGGAGCTCGGCCGCCTCAAGCGTTGCTCCTCGTTCGAGCTCCGGTCCGGAGCCGCCAATGGCAACCATGAGCCTGACCTCTCATGGGTCAACACCCTAGTGAAGGAGCCGACACCGGAGAAGATGATGACGACGACATCGGCAATGGATTCCATTGGCATCTTGGGACAGAACACAAGCCGTGATCACATCGTCGGAGGCGAGGATGACACTGCCGGAGTCATCAGCAGCTGGCTTGAACAGCTCCAGCTCGATGAGATGGTTGTCTAGAAACACAAAACACAAACACAAACTGAACAAGAAATGCGCCATTCTTTTAGATGTGCTTCGCCGATTGCTACTACTACTCACTACTTGTTGCTACTTGCTAGCATCAATCTTGCTATTGATTACCGGTGATACATTCTTTTGGGGGTGATGAGAATTATTTAGCGGAGAAGGTGATGAGGAAATTCTTCTACCATTTAGCATTGCCCGTATGTAAAAGAATCGGAGGAATCGGAGCCTAGTCAAATTGTATCAAATTGCTGGCTTGCCTAGGTGAAAGATTTCTCCTTTGTGTTTCTTTTCGATTTATCCTTGTATTAATCTTTTTAATCTCTTTTCGCTGTTTTTCTTTTCTAAAATGTGACTGAGGATCATGAATTATGTTGTTATCTATTTGCCCCCATCCTTTGGTTGTGAAGGAGTTGGAGGGGAGGGTATTTACATCAAATGTTGCTTAGTCCTAACAAAGCTCATCATTGATGTAATGCCCTACAAATTGTACCCATGATTCATGATTGATGTAAAATTCCTATTGTAGTACCAAGATTGATTAATCTCCCCTGTTTCCTGCATTTCTTTTCTTTTCTTCAGAAAGCATCATATACATGTGCCCTTT

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CDS seq

ATGGGGGAGCCTGGGGGCGCCGAGGCGGCCGTCTCCGCGAGGCTGCTCGAGCTGGCGGCCGACGACAACGCGGCGGGGCTCGGGGAGCTCCTCGCGGCGTGGCCCTCCCTCGCCGACGAGCCCGCGCCGTGGTACACCCCGGCGCGGGGCGCGGAGCCGCTGACCCCGCTCATGGTCGCCGCCGTGTACGGCTCGGTGGGCTGCCTCGACGCGCTCCTCTCGCCGCCCTACCTCGTGGACCCCAACCGCGCCTCGGCGTCGTCGCTCTCCACCCCGCTCCACCTCGCCGCCGCGGGCGGGTCCGCCTCCGCCCCCGCGGCGGTCTCCCGCCTCCTCGCCGCCGGCGCCGACCCGGCCCTCCTCGACCACCTCCAGCGCCGGGCGTCCGACCTCGTCGCGCTCCCGCCCAACTCGCTCCCGCTCAAGAACCACCTCCTCTCCCTCCTCGGCGCCCGCAAGGAGTGGCCTCCCGACCCCTCCCTCCCCGACATCAAGAACGGCGCCTACGCCTCCGACGACTTCAGGATGTACTCGTTCAAGGTGCGCGCGTGCTCGCGGGCCTACTCCCATGACTGGACGGAGTGCCCCTTCGTCCACCCCGGCGAGAACGCGCGGCGGCGCGACCCGAGGAAGTACCACTACAGCTGCGTGCCGTGCCCGGAGTTCAAGAAGGGGGCCGGGTGCAGGAGAGGGGACATGTGCGAGTACGCGCACGGGGTGTTCGAGAGCTGGCTCCACCCGGCGCAGTACCGGACGCGCCTCTGCAAGGACGGCGTCGGCTGCGCCCGCCGCGTCTGCTTCTTCGCCCACACGCCCGACGAGCTCCGCCCGCTCTACGTCTCCACGGGCTCCGCCGTGCCGTCGCCGCGCGGGGCGTTGGAGATGGCGGCGGCGGCGGCGGCGATGGGGATGGGGCTGTCGTCGCCGGGGTCGTCGTCGTTCACGCCGCCGCTATCGCCGTCGGCCGGCGGGGGCGGGGGCGGGGGCGGCGGCGGCGGCGGCGCGTGGCCGCAGCAGCCGAGCGTGCCGGCGCTCTGCCTGCCCGGGAGCGCCGGGAACCTCCACCTGAGCCGGCTGCGCACGTCGCTGAGCGCGCGCGACATGGCCGTCGACGAGCTGCTCGCCGCGGCGGCGGCGGCGGCGGACTACGACGGCCTCGTCGCCTCCCCCGCCTCCATCCGGTCCGCGAGGGGGAAGGCGCTTGTGCCGTCAAATCTCGACGAGCTCTTCTCCGCTGAGCTCGCCGCCGCCGCGGCGTCGCGCTCGCCGCGCTACGCCGACCAAGGCGGCGCCGCGTTCTCCCCGACCCGCAAGGCCGCCGTGCTCAACCAATTCCAGCAGCAGCAGCAGCAGAGCTTGCTCTCGCCGCGGGCGGCCGCGGTGACACCAGAGCCGGTCTCCCCAATGAGCTCCCGCCTCCTCGCCGCGCTGGCGCAGCGGGAGAAGATGCAGCAGCAGACGCTGCGGAGCATGAGCTCACGGGACCTCGGCAACGCCGCGTCGCTGCTGGTCGGCTCGCCGGTGAGCTCGAGCATGTCCAAATGGGGGTTCCCCTCCGGCAACCCGGACTGGGGCGCCGACGACGAGGAGCTCGGCCGCCTCAAGCGTTGCTCCTCGTTCGAGCTCCGGTCCGGAGCCGCCAATGGCAACCATGAGCCTGACCTCTCATGGGTCAACACCCTAGTGAAGGAGCCGACACCGGAGAAGATGATGACGACGACATCGGCAATGGATTCCATTGGCATCTTGGGACAGAACACAAGCCGTGATCACATCGTCGGAGGCGAGGATGACACTGCCGGAGTCATCAGCAGCTGGCTTGAACAGCTCCAGCTCGATGAGATGGTTGTCTAG

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Protein seq

MGEPGGAEAAVSARLLELAADDNAAGLGELLAAWPSLADEPAPWYTPARGAEPLTPLMVAAVYGSVGCLDALLSPPYLVDPNRASASSLSTPLHLAAAGGSASAPAAVSRLLAAGADPALLDHLQRRASDLVALPPNSLPLKNHLLSLLGARKEWPPDPSLPDIKNGAYASDDFRMYSFKVRACSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFKKGAGCRRGDMCEYAHGVFESWLHPAQYRTRLCKDGVGCARRVCFFAHTPDELRPLYVSTGSAVPSPRGALEMAAAAAAMGMGLSSPGSSSFTPPLSPSAGGGGGGGGGGGGAWPQQPSVPALCLPGSAGNLHLSRLRTSLSARDMAVDELLAAAAAAADYDGLVASPASIRSARGKALVPSNLDELFSAELAAAAASRSPRYADQGGAAFSPTRKAAVLNQFQQQQQQSLLSPRAAAVTPEPVSPMSSRLLAALAQREKMQQQTLRSMSSRDLGNAASLLVGSPVSSSMSKWGFPSGNPDWGADDEELGRLKRCSSFELRSGAANGNHEPDLSWVNTLVKEPTPEKMMTTTSAMDSIGILGQNTSRDHIVGGEDDTAGVISSWLEQLQLDEMVV

Function Zinc finger CCCH domain-containing protein 67 [UniProtKB/Swiss-Prot:Q2QPW2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsMH63_12G0268600 OsMH63_12T0268600.1 Chr12 18898223 18901037 + maker
CDS seq

ATGGGGGAGCCTGGGGGCGCCGAGGCGGCCGTCTCCGCGAGGCTGCTCGAGCTGGCGGCCGACGACAACGCGGCGGGGCTCGGGGAGCTCCTCGCGGCGTGGCCCTCCCTCGCCGACGAGCCCGCGCCGTGGTACACCCCGGCGCGGGGCGCGGAGCCGCTGACCCCGCTCATGGTCGCCGCCGTGTACGGCTCGGTGGGCTGCCTCGACGCGCTCCTCTCGCCGCCCTACCTCGTGGACCCCAACCGCGCCTCGGCGTCGTCGCTCTCCACCCCGCTCCACCTCGCCGCCGCGGGCGGGTCCGCCTCCGCCCCCGCGGCGGTCTCCCGCCTCCTCGCCGCCGGCGCCGACCCGGCCCTCCTCGACCACCTCCAGCGCCGGGCGTCCGACCTCGTCGCGCTCCCGCCCAACTCGCTCCCGCTCAAGAACCACCTCCTCTCCCTCCTCGGCGCCCGCAAGGAGTGGCCTCCCGACCCCTCCCTCCCCGACATCAAGAACGGCGCCTACGCCTCCGACGACTTCAGGATGTACTCGTTCAAGGTGCGCGCGTGCTCGCGGGCCTACTCCCATGACTGGACGGAGTGCCCCTTCGTCCACCCCGGCGAGAACGCGCGGCGGCGCGACCCGAGGAAGTACCACTACAGCTGCGTGCCGTGCCCGGAGTTCAAGAAGGGGGCCGGGTGCAGGAGAGGGGACATGTGCGAGTACGCGCACGGGGTGTTCGAGAGCTGGCTCCACCCGGCGCAGTACCGGACGCGCCTCTGCAAGGACGGCGTCGGCTGCGCCCGCCGCGTCTGCTTCTTCGCCCACACGCCCGACGAGCTCCGCCCGCTCTACGTCTCCACGGGCTCCGCCGTGCCGTCGCCGCGCGGGGCGTTGGAGATGGCGGCGGCGGCGGCGGCGATGGGGATGGGGCTGTCGTCGCCGGGGTCGTCGTCGTTCACGCCGCCGCTATCGCCGTCGGCCGGCGGGGGCGGGGGCGGGGGCGGCGGCGGCGGCGGCGCGTGGCCGCAGCAGCCGAGCGTGCCGGCGCTCTGCCTGCCCGGGAGCGCCGGGAACCTCCACCTGAGCCGGCTGCGCACGTCGCTGAGCGCGCGCGACATGGCCGTCGACGAGCTGCTCGCCGCGGCGGCGGCGGCGGCGGACTACGACGGCCTCGTCGCCTCCCCCGCCTCCATCCGGTCCGCGAGGGGGAAGGCGCTTGTGCCGTCAAATCTCGACGAGCTCTTCTCCGCTGAGCTCGCCGCCGCCGCGGCGTCGCGCTCGCCGCGCTACGCCGACCAAGGCGGCGCCGCGTTCTCCCCGACCCGCAAGGCCGCCGTGCTCAACCAATTCCAGCAGCAGCAGCAGCAGAGCTTGCTCTCGCCGCGGGCGGCCGCGGTGACACCAGAGCCGGTCTCCCCAATGAGCTCCCGCCTCCTCGCCGCGCTGGCGCAGCGGGAGAAGATGCAGCAGCAGACGCTGCGGAGCATGAGCTCACGGGACCTCGGCAACGCCGCGTCGCTGCTGGTCGGCTCGCCGGTGAGCTCGAGCATGTCCAAATGGGGGTTCCCCTCCGGCAACCCGGACTGGGGCGCCGACGACGAGGAGCTCGGCCGCCTCAAGCGTTGCTCCTCGTTCGAGCTCCGGTCCGGAGCCGCCAATGGCAACCATGAGCCTGACCTCTCATGGGTCAACACCCTAGTGAAGGAGCCGACACCGGAGAAGATGATGACGACGACATCGGCAATGGATTCCATTGGCATCTTGGGACAGAACACAAGCCGTGATCACATCGTCGGAGGCGAGGATGACACTGCCGGAGTCATCAGCAGCTGGCTTGAACAGCTCCAGCTCGATGAGATGGTTGTCTAG

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Protein seq

MGEPGGAEAAVSARLLELAADDNAAGLGELLAAWPSLADEPAPWYTPARGAEPLTPLMVAAVYGSVGCLDALLSPPYLVDPNRASASSLSTPLHLAAAGGSASAPAAVSRLLAAGADPALLDHLQRRASDLVALPPNSLPLKNHLLSLLGARKEWPPDPSLPDIKNGAYASDDFRMYSFKVRACSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFKKGAGCRRGDMCEYAHGVFESWLHPAQYRTRLCKDGVGCARRVCFFAHTPDELRPLYVSTGSAVPSPRGALEMAAAAAAMGMGLSSPGSSSFTPPLSPSAGGGGGGGGGGGGAWPQQPSVPALCLPGSAGNLHLSRLRTSLSARDMAVDELLAAAAAAADYDGLVASPASIRSARGKALVPSNLDELFSAELAAAAASRSPRYADQGGAAFSPTRKAAVLNQFQQQQQQSLLSPRAAAVTPEPVSPMSSRLLAALAQREKMQQQTLRSMSSRDLGNAASLLVGSPVSSSMSKWGFPSGNPDWGADDEELGRLKRCSSFELRSGAANGNHEPDLSWVNTLVKEPTPEKMMTTTSAMDSIGILGQNTSRDHIVGGEDDTAGVISSWLEQLQLDEMVV

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 2.3504175 7.05096 1.511123

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_12g0515500 RBH 1.917210 0.972363 1.085011
Nipponbare | IRGSP 1.0 | MSU LOC_Os12g33090 RBH 1.296517 0.653995 0.279303
Nipponbare | IRGSP 1.0 | RAP-db Os12g0515500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_12g0015220 RBH 0.253978 6.778260 1.685917
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_12g0015360 RBH 0.098689 0.199413 0.880005
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_12g0015270 RBH 0.026338 2.216166 0.852107
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_12g0015070 RBH 0.031406 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_12g0014590 RBH 0.0 4.905226 4.171071
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_12g0014770 RBH 0.190948 0.045145 0.468086
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_12G0299000 RBH 2.410245 6.292857 6.342511
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_12g0014970 RBH 0.041422 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_12g0015160 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_12g0015090 RBH 0.0 1.317211 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_12g0015020 RBH 0.230712 0.0 0.678432
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_12g0015170 RBH 0.0 3.586053 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_12G015070 RBH 0.0 1.778855 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_12g0014830 RBH 0.0 10.125374 1.476924
Os XI: R9311 | R9311 | AGIS R9311C12g39610 RBH None None None
Os XI-adm: HZ | HZ | PKU OsHZ_12g0174300 RBH None None None
Os XI-adm: J4155S | J4155S | PKU OsJ4155_12g0181600 RBH None None None
Os XI-adm: LK638S | LK638S | PKU OsLK638S_12g0173200 RBH None None None
Os XI-adm: XL628S | XL628S | PKU OsXL628S_12g0179600 RBH None None None
Os GJ-temp: 02428 | 02428 | SICAU Os02428G1224438900.01 RBH None None None
Os cB: Basmati1 | Basmati1 | SICAU OsBasmati1G1238699100.01 RBH None None None
Os O.glaberrima: Ogla | OglaRS2 | DIADE Oglab_032139 RBH None None None
Os XI-1A: CN1 | CN1 | SICAU OsCN1G1234400500.01 RBH None None None
Os XI-1A: D62 | D62 | SICAU OsD62G1236785500.01 RBH None None None
Os XI-1A: DG | DG | SICAU OsDGG1228115300.01 RBH None None None
Os GJ-temp: DHX2 | DHX2 | SICAU OsDHX2G1234096100.01 RBH None None None
Os XI-adm: FH838 | FH838 | SICAU OsFH838G1232670900.01 RBH None None None
Os XI-1A: FS32 | FS32 | SICAU OsFS32G1226888100.01 RBH None None None
Os XI-1A: G46 | G46 | SICAU OsG46G1223250100.01 RBH None None None
Os XI-adm: G630 | G630 | SICAU OsG630G1219071700.01 RBH None None None
Os XI-1B: G8 | G8 | SICAU OsG8G1228461100.01 RBH None None None
Os XI-1A: II32 | II32 | SICAU OsII32G1236685100.01 RBH None None None
Os XI-1B: J4155 | J4155 | SICAU OsJ4155G1224070500.01 RBH None None None
Os GJ-temp: Kosh | Kosh | SICAU OsKoshG1235159900.01 RBH None None None
Os GJ-temp: KY131 | KY131 | SICAU OsKY131G1219273300.01 RBH None None None
Os GJ-trp: Lemont | Lemont | SICAU OsLemontG1224829100.01 RBH None None None
Os GJ-adm: LJ | LJ | SICAU OsLJG1226185300.01 RBH None None None
Os GJ-sbtrp: NamRoo | NamRoo | SICAU OsNamRooG1233095700.01 RBH None None None
Os XI-1B: R498 | R498 | SICAU OsR498G1221715900.01 RBH None None None
Os XI-1B: R527 | R527 | SICAU OsR527G1224421300.01 RBH None None None
Os XI-1B: S548 | S548 | SICAU OsS548G1246189300.01 RBH None None None
Os XI-2: TM | TM | SICAU TMG1232417500.01 RBH None None None
Os XI-3: Tumba | Tumba | SICAU OsTumbaG1227776900.01 RBH None None None
Os XI-adm: WSSM | WSSM | SICAU OsWSSMG1222691100.01 RBH None None None
Os XI-1B: Y3551 | Y3551 | SICAU OsY3551G1228344300.01 RBH None None None
Os XI-1B: Y58S | Y58S | SICAU OsY58SG1230687500.01 RBH None None None
Os XI-adm: YX1 | YX1 | SICAU OsYX1G1232838900.01 RBH None None None
Os GJ-temp: ZH11 | ZH11 | SICAU OsZH11G1232567500.01 RBH None None None
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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