Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_12G0084700 | OGI:12014870 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr12:5282389-5285036 | ||||||||
| Gene Symbol | OsZHD3 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | |||||||||||
| DNA seq | ATTAGATACACCACAAGACAACAAGCTTCTTCTTCACCTCACCTCTCATCTCATCACCCCCCATAAGCTCATAGCTCTCCTCCTCCTACTCCTCTCACAATCTCTTTGTTTTCTTGTAATTCCAGCCACTTTGCAGGGCTTGTGTTTGTGCCCTTGCTAGTTGCTTCTCATTGCTGCAATGGTGGAAGGAGAGAACATTTGAGCTATCTCACTCACTCATCACCATGGCCTTGCTCCCTCTTTGCCCTCCTGATTAGCTTAGTTCTTGAGAGAGACACTCACACACACTGCAAGGTTTGTTTTCTTATCAGTTACTACTGCTTTTGTGCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTTGGATTTGTTTTCTTTTGTTCCATCTTGTTTGTTCCTCCACTGTTTCCAACCAGTGCAGGAACACCACCTGTTGTCCATCAATTGGTGTCCCTCCCACAGCAAAAAGGAACATACCTAGACTACTGCTAGGCAGTCTAGGAGGTTTCTTGTTTTCTCACTAATTTTGTTTATTAGTTTGAGTAGTTGTTTTTTTTTGTGTGTGTGTTTATGCTGGTAGGAGTCTAGAGGAGCTAGGTTCAAGCTCAAAGGCTGGTCCAGGCATATGTTAGGCTACAAGTTGATATTGCTAAGAACAAATTAAGCAAAGCATCCCTTGCTTATAGTAGTAGTAGTACTAGTGATTAAATTCTTGTGCATGGTGATTGATGGTGAGTAGCCCAAGGAGAAAAATAAAGTTTATTTTTTCTTTTTAGGCTTTGGACCAGAATAAGACCTCCATCTTGGAGGTTGCAACTGGTTTAGTATTATCTTGTTTGTCAAGATCCCAAGAACATCTCCATGACTAATCCTCTTCTATCTTTTTGTTGCCTTTATGTTTGTATGTTTGTCTCCTTTTGAGACTCCCAATGAGCAATGGATTCTTGCAATCTTGATTGGTTTATAGTACTTGGATAGTTTTGCAAATTAAGCTCAGCTCCCATGGCGCCATGGCGGCATTCGTATATTTCGTCTTGCTCTTGCTGATTCTTGCTGCTGTGTCCGCTATTGCAGCAAGCTCGGGTAGCTTCTGGAAGCTTCTGCTGTGTGTCCGCCATTGCAAATGGATCTTTCTGGGGCGCAGGGCGAGCTGCCGTTGCCAATGCACGCCGCGGCGTCGCCGTACCTCGGCTTGCACCATGACCACCACCACCATCATGGCGGCGGCGGCGGTGGAGGGATGAATGGGCGGCACATGTCGCCGCCTACGCCACCGGCGGCGGCGGAGGAGTCGAAGGCGGTGGTGGTGGTGTCGTCGTCGTCGGCGGCGGTGGCGGCGGCGAGGTACAGGGAGTGCCTCAAGAACCACGCGGCGGCCATCGGCGGCAGCGCCACGGACGGGTGCGGCGAGTTCATGCCCGGCGGCGAGGAAGGCTCGCTCGACGCGCTCCGCTGCTCCGCCTGCGGCTGCCACCGCAACTTCCACCGCAAGGAGCTCGACGCCGCCGCCACGCCGCTCCACCACCACCACCAACTGCTCGGCGTCGGCGCGCACCCCCGCGGCCACGGCCACCACCACCACCACCTCCTGGTGGCGGCGCTGCCGCCGCCGACGCGGATGGTGATGCCACTGAGCGCCATGCACACGTCGGAGTCGGACGACGCCGCGGCGCGCCCCGGCGGCGGCGGCGCGGTGGCGGCGAGGAAGCGGTTCCGGACCAAGTTCACGGCGGAGCAGAAGGCGCGGATGCTGGGGTTCGCCGAGGAGGTCGGGTGGCGGCTGCAGAAGCTGGAGGACGCCGTCGTGCAGCGCTTCTGCCAGGAGGTCGGCGTCAAGCGCCGCGTCCTCAAGGTCTGGATGCACAACAACAAGCACACCCTCGCCCGCCGCCACCTCCACCCCTCCTCCTCCGCCGCCGCCGCCGGAGACGACGACGACGGCGCGCCGCCGCACCCCGACCCCGGCGGCGCGAGCTCGCCGCCGCCGCCACCGCACCACCTCCGGCTCCAGTAACCCAACACATCAAGAAATCCATTGACAACAAAATTAAGGCTCATTTCTAGCTTAGCTGCATTGCATTGCATTGCTCTACTACTGTTCCATCAAATTGATGCTCAATCCTCTCTCTCTCTCTTCTGTTTAATTAATTAATCCATGTTTTTATTTTCTCTTTATTTCTCTAACTTGTTGTCTAGTGTTAATTAGTGAGCTGATTGGTGATCATGTGAGTGATGTCAAATTTGTGGGAGGGGGGTGAAACTGAAATCACCTGTCCATGCACATCCATGACTTGTAGCTTTCACTCCCCACTGTTCATGATATGATATGATGTGGTCTTCAGTTCCAAGTAGTAGCTAACTACTAGATGATCAGCACAGCTATCCACAGTCACTGAAGCAAGTACAATATCTTGTGAGTGATCAGCGGCTAATAATTCCAATTTGTGTGTCTCCTTGTTCTTGTTGTTAGTTAGCATCATCAGCCTCTGATACCTCTGACCAGATTAGCTATAGCTAGCAAGCAACCAAGCAAGCAAGAATGGTCTAATCAATAATGGATGGCATAACACAAATGATTGATGAAGTGTGTGTGTTTTTGACAAACTGGCTCAATTATTCTTTTGATGTGG
More
|
||||||||||
| CDS seq | ATGGATCTTTCTGGGGCGCAGGGCGAGCTGCCGTTGCCAATGCACGCCGCGGCGTCGCCGTACCTCGGCTTGCACCATGACCACCACCACCATCATGGCGGCGGCGGCGGTGGAGGGATGAATGGGCGGCACATGTCGCCGCCTACGCCACCGGCGGCGGCGGAGGAGTCGAAGGCGGTGGTGGTGGTGTCGTCGTCGTCGGCGGCGGTGGCGGCGGCGAGGTACAGGGAGTGCCTCAAGAACCACGCGGCGGCCATCGGCGGCAGCGCCACGGACGGGTGCGGCGAGTTCATGCCCGGCGGCGAGGAAGGCTCGCTCGACGCGCTCCGCTGCTCCGCCTGCGGCTGCCACCGCAACTTCCACCGCAAGGAGCTCGACGCCGCCGCCACGCCGCTCCACCACCACCACCAACTGCTCGGCGTCGGCGCGCACCCCCGCGGCCACGGCCACCACCACCACCACCTCCTGGTGGCGGCGCTGCCGCCGCCGACGCGGATGGTGATGCCACTGAGCGCCATGCACACGTCGGAGTCGGACGACGCCGCGGCGCGCCCCGGCGGCGGCGGCGCGGTGGCGGCGAGGAAGCGGTTCCGGACCAAGTTCACGGCGGAGCAGAAGGCGCGGATGCTGGGGTTCGCCGAGGAGGTCGGGTGGCGGCTGCAGAAGCTGGAGGACGCCGTCGTGCAGCGCTTCTGCCAGGAGGTCGGCGTCAAGCGCCGCGTCCTCAAGGTCTGGATGCACAACAACAAGCACACCCTCGCCCGCCGCCACCTCCACCCCTCCTCCTCCGCCGCCGCCGCCGGAGACGACGACGACGGCGCGCCGCCGCACCCCGACCCCGGCGGCGCGAGCTCGCCGCCGCCGCCACCGCACCACCTCCGGCTCCAGTAA
More
|
||||||||||
| Protein seq | MDLSGAQGELPLPMHAAASPYLGLHHDHHHHHGGGGGGGMNGRHMSPPTPPAAAEESKAVVVVSSSSAAVAAARYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKELDAAATPLHHHHQLLGVGAHPRGHGHHHHHLLVAALPPPTRMVMPLSAMHTSESDDAAARPGGGGAVAARKRFRTKFTAEQKARMLGFAEEVGWRLQKLEDAVVQRFCQEVGVKRRVLKVWMHNNKHTLARRHLHPSSSAAAAGDDDDGAPPHPDPGGASSPPPPPHHLRLQ |
||||||||||
| Function | Zinc-finger homeodomain protein 3 [UniProtKB/Swiss-Prot:Q2QW44] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0084700 | OsMH63_12T0084700.1 | Chr12 | 5282389 | 5285036 | + | maker | ||
| CDS seq | ATGGATCTTTCTGGGGCGCAGGGCGAGCTGCCGTTGCCAATGCACGCCGCGGCGTCGCCGTACCTCGGCTTGCACCATGACCACCACCACCATCATGGCGGCGGCGGCGGTGGAGGGATGAATGGGCGGCACATGTCGCCGCCTACGCCACCGGCGGCGGCGGAGGAGTCGAAGGCGGTGGTGGTGGTGTCGTCGTCGTCGGCGGCGGTGGCGGCGGCGAGGTACAGGGAGTGCCTCAAGAACCACGCGGCGGCCATCGGCGGCAGCGCCACGGACGGGTGCGGCGAGTTCATGCCCGGCGGCGAGGAAGGCTCGCTCGACGCGCTCCGCTGCTCCGCCTGCGGCTGCCACCGCAACTTCCACCGCAAGGAGCTCGACGCCGCCGCCACGCCGCTCCACCACCACCACCAACTGCTCGGCGTCGGCGCGCACCCCCGCGGCCACGGCCACCACCACCACCACCTCCTGGTGGCGGCGCTGCCGCCGCCGACGCGGATGGTGATGCCACTGAGCGCCATGCACACGTCGGAGTCGGACGACGCCGCGGCGCGCCCCGGCGGCGGCGGCGCGGTGGCGGCGAGGAAGCGGTTCCGGACCAAGTTCACGGCGGAGCAGAAGGCGCGGATGCTGGGGTTCGCCGAGGAGGTCGGGTGGCGGCTGCAGAAGCTGGAGGACGCCGTCGTGCAGCGCTTCTGCCAGGAGGTCGGCGTCAAGCGCCGCGTCCTCAAGGTCTGGATGCACAACAACAAGCACACCCTCGCCCGCCGCCACCTCCACCCCTCCTCCTCCGCCGCCGCCGCCGGAGACGACGACGACGGCGCGCCGCCGCACCCCGACCCCGGCGGCGCGAGCTCGCCGCCGCCGCCACCGCACCACCTCCGGCTCCAGTAA
More
|
|||||||
| Protein seq | MDLSGAQGELPLPMHAAASPYLGLHHDHHHHHGGGGGGGMNGRHMSPPTPPAAAEESKAVVVVSSSSAAVAAARYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKELDAAATPLHHHHQLLGVGAHPRGHGHHHHHLLVAALPPPTRMVMPLSAMHTSESDDAAARPGGGGAVAARKRFRTKFTAEQKARMLGFAEEVGWRLQKLEDAVVQRFCQEVGVKRRVLKVWMHNNKHTLARRHLHPSSSAAAAGDDDDGAPPHPDPGGASSPPPPPHHLRLQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 10.7639395 | 0.164774 | 5.986274 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0208900 | RBH | 0.690794 | 1.317138 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10630 | RBH | 0.487074 | 0.676307 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0208900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006780 | RBH | 0.000000 | 0.0 | 2.578249 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006860 | RBH | 0.159485 | 0.0 | 0.396078 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006850 | RBH | 0.534998 | 1.378767 | 1.433113 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006750 | RBH | 0.165135 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006610 | RBH | 0.655912 | 0.0 | 2.120791 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006570 | RBH | 0.135331 | 0.0 | 0.139002 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0090400 | RBH | 13.593233 | 0.0783265 | 41.4616205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006480 | RBH | 0.094677 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0006740 | RBH | 0.114286 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006590 | RBH | 2.849405 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006610 | RBH | 0.225829 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006510 | RBH | 0.384742 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006630 | RBH | 0.084901 | 0.0 | 1.301804 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006620 | RBH | 0.000000 | 0.0 | 0.578846 |
| Os XI: R9311 | R9311 | AGIS | R9311C12g38743 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_12g0071100 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_12g0073400 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_12g0072000 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_12g0072500 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1223817700.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1237504900.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_031190 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1233703900.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1235736500.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1227045500.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1232565500.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1231536100.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1225263300.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1222355500.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1218507500.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1227305500.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1235665900.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1223490700.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1233527100.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1219007300.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1223562900.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1224729900.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG1231755100.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1221105700.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G1223202900.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1245055900.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1231276700.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1226635900.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1221550700.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1227174900.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1229493100.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1231877500.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1230922900.01 | RBH | None | None | None |
