Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_10G0155000 | OGI:10030920 | 47/50 | Minghui 63 | MH63RS3 | HZAU | Chr10:10497229-10499885 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | ATGACCCCAGATCGGCAGCGGTCTTGCAAATCTTATGCTGAGGTGAGCTCCAAGCATGGTGCCAGATCAGGACGGTGAACTCCGGCATGATGTGTGAGCCGATATGATGGCTAGGCTGTGGCGACCCGTAGAAGTTTGTTTTTATCTCCCTGCTCTATTTGATGTTAGATTCCATTATGTATATTCAGAGATCCAATCAGTATTAATTAGTTAATGTTCATGCATCGGATTTGTTAATGCAGATGTTCTCTAAGCACTTCACTTCGGCTAACAGCCCATGTTACAAGTTCTATCGTCCATGAGCAATCAAGCAACATCAGATATGGAGAGAATCGGAAGCATGGGCAGAGATATGCGTATCATGAGGTATTCTCTTCACTTGCATGACAAACATCGTCCCATTAAGTACTAATGCTAACTAATTTATTGTAAATCATGCCCCTTGTATAGTTTGCTTCTCTGGCTGAAGTACTATAGCTGATTCCTTGCTTTTTTGTGCCAGATAGAAAATATTTCCATGTTCCTTCGCAAATTATAAACAGCGTTGAATACAGGATATTCCCATATTTCTTTAACAATCAATATTAAATATTGTATTAACTGTGAACCTTTATTTGCTCCTTCTCTTTATTATCTAAATTTGTTCTAACCATTATCACCTTCTTATATTCTTTCCATATCTTATTAGACCGCTAAAAACACTCTTTTATCATCTTATCATATAGGTCGCTATCTTTCTTATATTGTACATATTTTCCCTGCCCCAAAAATAGTTGATCTTTACATGCACCCACAATAATGCTATTCCTAATTTTAGGTCTGCCTCCATTATAGAACAGCAACATTTTATTCAGCCACTGATATACAAACAACATATGTTCCAGCTTCTTTATGATGACTCAAACAACATCTGCTATGCTAAGGTTCACACAGTTGGATGGAGAAGATTTTGTAAGTGCAAACAGCTACTTTTCGCATTCGCATGAACATACTACGCTATCTGTTACTGATGGGAAGTTTTTTTGTAGCCTCTCCCACCCGAGATTGTTGCCCGCTGCAATGGACACGATGGGAAACATCTAACTTTAGTCACACGGAATAGCAAACCAGTGAATGTCAGGCTCGAAAAAAGAGGCCAATCATTCTACATCTCGAAAGGCTGGAAAAAATTTGTTGAACTTACTGACTTACGTGTTGGACAGTGTGTTAGATTTAGTGTCTCTTCTCCATCAACACTTGATCTCCTCATACTTGACAAGCATGGAACAAGTCTTGCCATACCTCCATCAAAAAGAGATCTGAAATTAAAGTCAAAAAGGTCTACACACCAGGACAGCAAAGGTACTCTCGCCACACAAACACCTTTCGTTACAAACAATATGATTATAGTCTCACACCAATTAAGTCAAGAGCCTCATTTATTCATTAACCTATACCATATCATTAACGATACCAGCTCCCTTACTAACGTGCTTCATATTCCTATTGCAGGCCATCCATCTAACACTGATCCAGGACCATCACGTATTATCAACCGCAGGGTGACCAAATCAGGTCAACTGATTACCCATGCCGTTACTTTAGATTGCGTTCCTCTTTTAGTCCTAATAGAATTTCAACACGTACAATTAGCATCACGGCACGCAACAACATCATTTAATCATACAGCCCGCATCTCACATCTCTTCATGGCCTAGGTACACCACCACCAAAAATATATTTAACTTCCTATTTTTACACTGCTGCATAGTGCACCCATAAGAAGTAGCATAAGCACTTTTACAGGCCGAACCACCCCGCATTGCCATTCCCTGTATTATTGCTAATTGGATTCTTTCATACATACTCAAAATACTTATACAATACTTCCATGCAGCAAACAACAAACCCAAGTTTGCAGATCTTTGCTTCTGTGCCGAGAATGTTACCTTATCAACTGCTCTGAAAAGGCACATGAAAACCCTTGCATAGTGCATCGAACATCCAAGTAAACTCTATGTTGTCACTATGAATGAAACGTTCATGAAACAAGACAGAGTGGTTAGCTTTTTTTACCTATTTATCATCGTCTTATATTTAGAATCATCAGCTAACACCCAACTTCTGGTACAGTACTTTTCAAAAAGGTACCCTATAGACCATCTGGAGCAGCTCATGACTGGCAGAACAGAAGATATTGAAGTGCAGACATTAGTAGGCCCTTCAGTGAACATGGTTCTTCACACATCAACAGACCATCGTTGCAACCTAAAAAAAGGATGGACAGATTTCGCCCTCAGCAATGGCATCAAGTTGAACACAGTGTGCATTTTCCATTTTTACAAGACAACCCATCTAGGAGTGATTGTCGATATCTTCTGAAGATACCCTAATGCTATCTGATATCATGCTTTTGTTAATAGCAAGCGTCCCTACCTCCATACAGCCTACTATTTATATATTATAGTGCCAATGTTATGGCCATCAGCTCTGAACCATATAAATACACTGTGTGCACTCTACTTATCAGTCTATTATGGCACTTACATATGTACACACTGGAAGGGACACCAGTCAACCTCCTTAACTATGTATGAACCATTCACTTCTTTATCTGTAAAGACGAACTGTCCTTCCTTCACTGCTTTCTTCCTTATTCAATTTGTTCATTATACCTG
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| CDS seq | MTPDRQRSCKSYAEVSSKHGARSGRCSLSTSLRLTAHVTSSIVHEQSSNIRYGENRKHGQRYAYHELLYDDSNNICYAKPLPPEIVARCNGHDGKHLTLVTRNSKPVNVRLEKRGQSFYISKGWKKFVELTDLRVGQCVRFSVSSPSTLDLLILDKHGTSLAIPPSKRDLKLKSKRSTHQDSKGHPSNTDPGPSRIINRRVTKSANNKPKFADLCFCAENYFSKRYPIDHLEQLMTGRTEDIEVQTLVGPSVNMVLHTSTDHRCNLKKGWTDFALSNGIKLNTVCIFHFYKTTHLGVIVDIF |
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| Protein seq | MTPDRQRSCKSYAEVSSKHGARSGRCSLSTSLRLTAHVTSSIVHEQSSNIRYGENRKHGQRYAYHELLYDDSNNICYAKPLPPEIVARCNGHDGKHLTLVTRNSKPVNVRLEKRGQSFYISKGWKKFVELTDLRVGQCVRFSVSSPSTLDLLILDKHGTSLAIPPSKRDLKLKSKRSTHQDSKGHPSNTDPGPSRIINRRVTKSANNKPKFADLCFCAENYFSKRYPIDHLEQLMTGRTEDIEVQTLVGPSVNMVLHTSTDHRCNLKKGWTDFALSNGIKLNTVCIFHFYKTTHLGVIVDIF |
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| Function | B3 domain-containing protein Os10g0323000 [UniProtKB/Swiss-Prot:Q7XFU9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_10G0155000 | OsMH63_10T0155000-mRNA-1 | Chr10 | 10497229 | 10499885 | + | maker | ||
| CDS seq | ATGACCCCAGATCGGCAGCGGTCTTGCAAATCTTATGCTGAGGTGAGCTCCAAGCATGGTGCCAGATCAGGACGATGTTCTCTAAGCACTTCACTTCGGCTAACAGCCCATGTTACAAGTTCTATCGTCCATGAGCAATCAAGCAACATCAGATATGGAGAGAATCGGAAGCATGGGCAGAGATATGCGTATCATGAGCTTCTTTATGATGACTCAAACAACATCTGCTATGCTAAGCCTCTCCCACCCGAGATTGTTGCCCGCTGCAATGGACACGATGGGAAACATCTAACTTTAGTCACACGGAATAGCAAACCAGTGAATGTCAGGCTCGAAAAAAGAGGCCAATCATTCTACATCTCGAAAGGCTGGAAAAAATTTGTTGAACTTACTGACTTACGTGTTGGACAGTGTGTTAGATTTAGTGTCTCTTCTCCATCAACACTTGATCTCCTCATACTTGACAAGCATGGAACAAGTCTTGCCATACCTCCATCAAAAAGAGATCTGAAATTAAAGTCAAAAAGGTCTACACACCAGGACAGCAAAGGCCATCCATCTAACACTGATCCAGGACCATCACGTATTATCAACCGCAGGGTGACCAAATCAGCAAACAACAAACCCAAGTTTGCAGATCTTTGCTTCTGTGCCGAGAATTACTTTTCAAAAAGGTACCCTATAGACCATCTGGAGCAGCTCATGACTGGCAGAACAGAAGATATTGAAGTGCAGACATTAGTAGGCCCTTCAGTGAACATGGTTCTTCACACATCAACAGACCATCGTTGCAACCTAAAAAAAGGATGGACAGATTTCGCCCTCAGCAATGGCATCAAGTTGAACACAGTGTGCATTTTCCATTTTTACAAGACAACCCATCTAGGAGTGATTGTCGATATCTTCTGA
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| Protein seq | MTPDRQRSCKSYAEVSSKHGARSGRCSLSTSLRLTAHVTSSIVHEQSSNIRYGENRKHGQRYAYHELLYDDSNNICYAKPLPPEIVARCNGHDGKHLTLVTRNSKPVNVRLEKRGQSFYISKGWKKFVELTDLRVGQCVRFSVSSPSTLDLLILDKHGTSLAIPPSKRDLKLKSKRSTHQDSKGHPSNTDPGPSRIINRRVTKSANNKPKFADLCFCAENYFSKRYPIDHLEQLMTGRTEDIEVQTLVGPSVNMVLHTSTDHRCNLKKGWTDFALSNGIKLNTVCIFHFYKTTHLGVIVDIF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.762764 | 4.6174405 | 3.047643 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0323000 | RBH | 0.881853 | 0.808424 | 0.895719 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g17630 | RBH | 0.000000 | 0.000000 | 0.281331 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0323000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0006340 | RBH | 0.125645 | 3.204067 | 2.138608 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0006220 | RBH | 0.039638 | 2.643288 | 4.011546 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0006090 | RBH | 0.276572 | 2.645360 | 5.990156 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0006510 | RBH | 0.080515 | 0.128076 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0006230 | RBH | 0.925985 | 0.000000 | 7.043329 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0006390 | RBH | 0.131790 | 0.000000 | 2.148781 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0170300 | RBH | 2.4131545 | 8.1431415 | 9.2917635 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0006220 | RBH | 0.130727 | 0.096589 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0006260 | RBH | 0.576926 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0006450 | RBH | 5.831019 | 31.258638 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0006130 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0006540 | RBH | 0.259663 | 1.856267 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G006320 | RBH | 0.000000 | 0.762843 | 0.232575 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0006440 | RBH | 1.064973 | 0.000000 | 2.292341 |
| Os XI: R9311 | R9311 | AGIS | R9311C10g33685 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_10g0089100 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_10g0091600 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_10g0085700 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_10g0091100 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1018685900.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1032518100.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_036115 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1029443900.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1031075100.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1022702700.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1027245100.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1020473900.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1015873100.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1022983700.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1031243300.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1020917900.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1027922500.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1017598900.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1018458500.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1019374300.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG1026708300.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R527 | R527 | SICAU | OsR527G1020819100.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1039829300.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1026860300.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1022245300.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1017231100.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1022754300.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1024817900.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1027635700.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1025338900.01 | RBH | None | None | None |
