Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_07G0457800 | OGI:07076940 | 37/50 | Minghui 63 | MH63RS3 | HZAU | Chr07:29265698-29266999 | ||||||||
| Gene Symbol | OsGZF1 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | GTAAAGAAAATGATACCACTTGATATATAGGCTCGGAGCTAGCCCGACGACAATATCATAAATATTTTTATATATGCATGCACACGCATACACTTTTCTAGTAAAAATTGGCATAAATATGATACATGATCCAGCACCATATGTATAGGGTGTCAACTTTTAAAGCATCCCAAATCGCTCAAGTTTCTCCATTTTGGCAATTTGCGAGCTTGTGTCATCTCCTTCAAATGCATCGCAAAAGAGTATGTAACACACCCATCTACACGAAGAACAAACAAAAAGATTCAACATATACACATGCATAAATACAAACACTTCATTGATGGTTGATTAATTAATTTACCTATTCATCCACCAAGTCCATGATGAGATCATAATGTGGGTAGCCATTGAGCAAAGCGTCTTCCTCCTCCACACAACGGCGGCAACCACACCTTTTTCCAGTTGAACCCTCACCATTTGCCAATGTTGACACCGGTATGGTGGTGGTAGCAACAGCGGTAGCAGAAGAAGAACCAACATTAGCATTAGCATTAGCATTAGAATACAAGCGAAGCCTATTTCTCATGGCCTCTTCGATTAGATCAAGCTGATCACGCATAGCAGAAACCCTGGGATGATGATCAGCATCAGGAGTCCGCATCGGTATCGACATCGGCATCGGCATTGGCATCGGTGTGAGGATGGCTGACGCAATGGAGTTGGGATCGTCCCTAAGCTCGGCGGCGGAGTGGGCAAAGAAGCAGATCCGGCGAGGGCACCGCGTGCCGGCGGAGCACATGCGCGTGCGGAAGCGGGACGGGTGCAGCCATAGCTCGAAGACACCATGGGCGTAGCGGCAACGGAGGCCGTGGGCGCAGCTGGGCACGGCGCCCGGCGCCGCCTCGCGCGGGCGGTAGTCCGGGCACGACACGGCGGCGTACGCGAAGCGCCGCGTGTCGCGCCGCCGCGCGCGCTCGCCCTTGTGCGCGTAGGGGCACGACGTCCAGTCGTGGCTGGACGACCGCGGGCACCGCTGCACCTTGTAGACGTGTATCCAGAAATCCTCCGACATGGATGCCCAGAGACGGTGGCCACGATGAGCCCATGCGCCCCACTTGGTCGGGTCAATGGTTACTTCTTCTTCTTCATGGCCGATGATGCTCGTCGTCTGTGCAAAAACATCATGCATATGATGCATAGCCATGGCCACAAAAAAATGTATATATGCAAGCTAAGCCTGTGTTTGCAATGTGCTTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
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| CDS seq | ATGGCTATGCATCATATGCATGATGTTTTTGCACAGACGACGAGCATCATCGGCCATGAAGAAGAAGAAGTAACCATTGACCCGACCAAGTGGGGCGCATGGGCTCATCGTGGCCACCGTCTCTGGGCATCCATGTCGGAGGATTTCTGGATACACGTCTACAAGGTGCAGCGGTGCCCGCGGTCGTCCAGCCACGACTGGACGTCGTGCCCCTACGCGCACAAGGGCGAGCGCGCGCGGCGGCGCGACACGCGGCGCTTCGCGTACGCCGCCGTGTCGTGCCCGGACTACCGCCCGCGCGAGGCGGCGCCGGGCGCCGTGCCCAGCTGCGCCCACGGCCTCCGTTGCCGCTACGCCCATGGTGTCTTCGAGCTATGGCTGCACCCGTCCCGCTTCCGCACGCGCATGTGCTCCGCCGGCACGCGGTGCCCTCGCCGGATCTGCTTCTTTGCCCACTCCGCCGCCGAGCTTAGGGACGATCCCAACTCCATTGCGTCAGCCATCCTCACACCGATGCCAATGCCGATGCCGATGTCGATACCGATGCGGACTCCTGATGCTGATCATCATCCCAGGGTTTCTGCTATGCGTGATCAGCTTGATCTAATCGAAGAGGCCATGAGAAATAGGCTTCGCTTGTATTCTAATGCTAATGCTAATGCTAATGTTGGTTCTTCTTCTGCTACCGCTGTTGCTACCACCACCATACCGGTGTCAACATTGGCAAATGGTGAGGGTTCAACTGGAAAAAGGTGTGGTTGCCGCCGTTGTGTGGAGGAGGAAGACGCTTTGCTCAATGGCTACCCACATTATGATCTCATCATGGACTTGGTGGATGAATAG
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| Protein seq | MAMHHMHDVFAQTTSIIGHEEEEVTIDPTKWGAWAHRGHRLWASMSEDFWIHVYKVQRCPRSSSHDWTSCPYAHKGERARRRDTRRFAYAAVSCPDYRPREAAPGAVPSCAHGLRCRYAHGVFELWLHPSRFRTRMCSAGTRCPRRICFFAHSAAELRDDPNSIASAILTPMPMPMPMSIPMRTPDADHHPRVSAMRDQLDLIEEAMRNRLRLYSNANANANVGSSSATAVATTTIPVSTLANGEGSTGKRCGCRRCVEEEDALLNGYPHYDLIMDLVDE |
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| Function | Zinc finger CCCH domain-containing protein 24 [UniProtKB/Swiss-Prot:Q10EL1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_07G0457800 | OsMH63_07T0457800.1 | Chr07 | 29265698 | 29266999 | - | maker | ||
| CDS seq | ATGGCTATGCATCATATGCATGATGTTTTTGCACAGACGACGAGCATCATCGGCCATGAAGAAGAAGAAGTAACCATTGACCCGACCAAGTGGGGCGCATGGGCTCATCGTGGCCACCGTCTCTGGGCATCCATGTCGGAGGATTTCTGGATACACGTCTACAAGGTGCAGCGGTGCCCGCGGTCGTCCAGCCACGACTGGACGTCGTGCCCCTACGCGCACAAGGGCGAGCGCGCGCGGCGGCGCGACACGCGGCGCTTCGCGTACGCCGCCGTGTCGTGCCCGGACTACCGCCCGCGCGAGGCGGCGCCGGGCGCCGTGCCCAGCTGCGCCCACGGCCTCCGTTGCCGCTACGCCCATGGTGTCTTCGAGCTATGGCTGCACCCGTCCCGCTTCCGCACGCGCATGTGCTCCGCCGGCACGCGGTGCCCTCGCCGGATCTGCTTCTTTGCCCACTCCGCCGCCGAGCTTAGGGACGATCCCAACTCCATTGCGTCAGCCATCCTCACACCGATGCCAATGCCGATGCCGATGTCGATACCGATGCGGACTCCTGATGCTGATCATCATCCCAGGGTTTCTGCTATGCGTGATCAGCTTGATCTAATCGAAGAGGCCATGAGAAATAGGCTTCGCTTGTATTCTAATGCTAATGCTAATGCTAATGTTGGTTCTTCTTCTGCTACCGCTGTTGCTACCACCACCATACCGGTGTCAACATTGGCAAATGGTGAGGGTTCAACTGGAAAAAGGTGTGGTTGCCGCCGTTGTGTGGAGGAGGAAGACGCTTTGCTCAATGGCTACCCACATTATGATCTCATCATGGACTTGGTGGATGAATAG
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| Protein seq | MAMHHMHDVFAQTTSIIGHEEEEVTIDPTKWGAWAHRGHRLWASMSEDFWIHVYKVQRCPRSSSHDWTSCPYAHKGERARRRDTRRFAYAAVSCPDYRPREAAPGAVPSCAHGLRCRYAHGVFELWLHPSRFRTRMCSAGTRCPRRICFFAHSAAELRDDPNSIASAILTPMPMPMPMSIPMRTPDADHHPRVSAMRDQLDLIEEAMRNRLRLYSNANANANVGSSSATAVATTTIPVSTLANGEGSTGKRCGCRRCVEEEDALLNGYPHYDLIMDLVDE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0668600 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g47240 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0668600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0020020 | SBH | 0.527224 | 12.269720 | 6.379474 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0019900 | SBH | 1.613139 | 10.018869 | 7.315614 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0019840 | SBH | 9.300345 | 16.610228 | 15.906534 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0471200 | RBH | 0 | 0.107615 | 0.007999 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0019860 | SBH | 0.914169 | 1.850220 | 2.268880 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | R9311C07g27665 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_07g0314200 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_07g0319600 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_07g0308500 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_07g0320500 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0712772800.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0726377600.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_027464 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0723553000.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0725509400.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0717142000.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0720265600.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0721408200.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0716729800.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0714122000.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0712675000.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0717223000.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0725266400.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0717650000.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0720644200.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0715932800.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0712805400.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0712805400.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0719916000.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0714924000.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0716031400.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0732279000.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0721110000.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0716536600.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0712721800.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0718228000.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0718796000.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0721854800.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0717999000.01 | RBH | None | None | None |
