Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsMH63_07G0373700 OGI:07063950 | 50/50 Minghui 63 | MH63RS3 | HZAU Chr07:24117477-24120613
Gene Symbol DLN188,OsDLN188,OsCCCH-Zn-6,OsTZF6,C3H50,OsC3H50
Mutant -
Stuctural Variations

KY131_MH63RS3_DEL0742130,

DNA seq

ATGCCCCGGGCCCTCGTGTCAGCGACAGCGGAGGGAGGCGGGTCGGTTTGCGGTGGGGGATGCGAGGGACGTGGCGCCCGAGGAATTAGACCATTTAACTCGTCGCCACCACCACCAGTAAACTGCGAGTCCTCCTCCTCTTCTCGTCGCCGTGCTACTCTCGCTTTCTCTCTCTCTCTCTCTCACTTGTTCCCCAAGGCGAGAAGCAGCCGCCGCCGGCGAGCGTCGCGGGGGAGGGGAGGGAAGGGAGGGAGGAGCGGTGGATCCGGGCTTGATTGGATTGGGTCGGATTCGATTTTGGATCAACCCCGGAGGGCGGGAGGTAAAAACGCTACTACTCATTTATTGCTTTCCTTTCCTTTCTCCGGCCGATCCGGCCGAAATCGGCGATTGCTCGCCGCGGAATCCCGATTGGGTGTGGGGGGATGGGCTGATCTCCTTCCGAGAACCGGGAGCTCGGATGCGTCGAGTTGGTTTTGTGCTCCTTTTGCTTTCCCTTTTTCTGGATTCGGGTTTCCATATTGGAAGGTTTCTTGATCTCGATTTCGTGGCGTGAGCTGGTTGCTGAATCTTATATAGCTTTCCTTCTTCTTCTTCTTCTAGCGGTTGCTACAGATGCGTTGAGCTTTGGTTAATCTATCCGGCGAGAGATAATGGGCGAGCTTGCTGATCTCGTTGTCGTGCCGTCGCAGCCGCCGCTCGCCGGCGGCCGGCGGGACAGGCTGGCGGCGCTGCTGGAGCTCGCGGCGGCGGATGATGTTGATGGGCTCAGGGGGGCGCTCGCGGAGGGAGGCGAGGAGGCGGCGGAGTTGGCTGATGGGGTCGGGCTGTGGTATGGTCGGAGCAAGGCGTACGAGGCGCGCACGCCGCTGATGGTGGCGGCGACGTACGGCAGCGCCGGGGTGGTCTCGCTGCTGGTGGGCCTCGGCGGTTGCGTCGACGTCAACCGTCGCCCTGGAGCCGACGGCGCCACCGCGCTCCACTGCGCCGCCTCCGGTGGCTCGCGCAACGCCGTCGCTGTTGTCAAGCTGCTTTTGGCCGCTGGCGCCGATCCGGCCACCCCCGATTCCGCCGGCCGCTTCCCCGCCGACGTCATCCTAGCTCCTCCGGCTTCGCCAGATGCCCTTGGCGATCTCGAGGTGCTCCTCGGCCGCCGCCGAGCACTCGCCGTGGCGACCTCGGTGGCTTCAGGTTCGTCATCCCCTCCGCTCTCGTCCTCACCAGATGAGGGCAACAGGTCGCCCTCGTCGCGTTCGTCGTCGCTGTCTCCCATCACTGTGGATCGTGGGAAGAAGGAGTATCCGGTGGATCCAACTCTGCCGGACATCAAGAGCAGCGTGTATGCTTCGGATGAGTTCCGCATGTTTGCGTTCAAGGTCCGGCCCTGCTCCCGTGCCTACTCACACGACTGGACTGAGTGCCCGTTTGTGCACCCCGGCGAGAACGCCCGCCGCCGTGATCCCCGCAAGCACCCATACACTGCTGTGCCTTGCCCCAACTTTCGCCGGCCTGGTGGCTGCCCTAGCGGCGATAGCTGTGAGTTCTCGCATGGCGTGTTTGAGAGCTGGCTACACCCATCACAGTATCGCACAAGGCTCTGCAAGGAGGGAGCAGCTTGCGCCCGTCGCATTTGCTTCTTTGCCCATGATGAGGATGAGCTCCGCCATGTGCCTCACAACAGTGGTGCCGGCCTGCTGTCTCCCCGCGCTTCTTCATCCATTGATATGACTGCTGCAGCTGCGCTCGGGCTTCTTCCAGGTTCTCCTACCAGACACTTTGCACCGCCGCCTGTGTCACCATCTGCTGGGAGCAATGGAGGAGCTGCTGCTGCGCATTGGCTCCAAGGCAGTAGGCTGCGCTCTTCTTTCAATGCAAGGGATGCTGCTGTTGATGACCTTGGCATGCTCCTCGAATGGGAATCACAATACCTTGGGGCACTCTGCCTGCCACCCAGCAGCCGCCCCCAACCACGCCTTTCAGCTGGTCTGAGTATCAGGCCAACAATTGCTCCATCCAATCTTGAAGACATGTATGCTTCAGACATGGCAATGTCTCCGAGGTTCCCTAATGACCAAGGTCACTCAGTCTACTCACCAGCCCACAAATCAGCCCTCCTCAACAAGCTTCATCAACAGAAGGGCCTCTTATCACCTGTTAACACCAACAGAATGTACTCCCCAAGGGCTCTTGATCCTTCATCTTTGGCACATTCTCCATTTGGTGGCATGTCTCCCCGGTCCCCCCGTACCATGGAACCTACATCACCCCTAAGTGCTCGTGTAGGAGCCCCTGCCACACAGCGTGAGATGTTTGAGCAATTTGCTTCCTTGAATAAGCATCAGCTGCCTTCTGTTGGTTCACCACGGAATTCCACTGCTTGGGGCACCGTGGGGTCCCCGATGGGTAAGGTTGACTGGGGTGTCGATAGCGAGGAGCTAGTCCGCTTGAGACGCCCTGCACAACCAGGGTTTGGAGAAGATGAGACAGATGTATCATGGGTGCAGTCACTGGTAAGCAATGCTGAGCTTAATGGCAAGAGGGGCGAAGTACAAGGCATGCCTGGTACTTCTGCATTGATGAACAGGCCTGACCTGAACAATCAGGGTGACTTGTTGGACCAGACGGTGATCGGTGCTTGGCTTGAGCAGATGCACCTGGATCAGAAGTGATTTCCAAGGGAAGCCATGAAGTCCCAAAGTGGATGAAGCCTTTATTTTCCAAGGTTATTTACCAAAGAATAGTTGTTGGTCCTAGTAAATAATAATTTATTCTTTTTAATTCTTGAAATTTTTGGTGGGCAAAGTCAGAGATGGTGGTCAAGTTCAACAAAACATTTGGTCACAGATTGGTAGCTGAAATCAGTTCCAGAGATTGGTAAACAACCTCATTACTTGGGGTCCTAACTAGTATTCTTTTGATTAGCTCAGATGAGTCTTTATTTTAGTGGGTTAAAATTCATATGTTCCCCATGGTTATTATGTCCATGATCTCTTCCTAACAAAAGAGAGATTATAATTGTCCAATTTTCATTTATCAATGAATGATTTTGTTAAAACAATGTAAGTTACATTCTTAATTTTTTCTCTGTTCAATGGAATTACCTTCCTTGGTTAGTCCTCTATTGGATTGTGTTTTGA

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CDS seq

MGELADLVVVPSQPPLAGGRRDRLAALLELAAADDVDGLRGALAEGGEEAAELADGVGLWYGRSKAYEARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVILAPPASPDALGDLEVLLGRRRALAVATSVASGSSSPPLSSSPDEGNRSPSSRSSSLSPITVDRGKKEYPVDPTLPDIKSSVYASDEFRMFAFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKHPYTAVPCPNFRRPGGCPSGDSCEFSHGVFESWLHPSQYRTRLCKEGAACARRICFFAHDEDELRHVPHNSGAGLLSPRASSSIDMTAAAALGLLPGSPTRHFAPPPVSPSAGSNGGAAAAHWLQGSRLRSSFNARDAAVDDLGMLLEWESQYLGALCLPPSSRPQPRLSAGLSIRPTIAPSNLEDMYASDMAMSPRFPNDQGHSVYSPAHKSALLNKLHQQKGLLSPVNTNRMYSPRALDPSSLAHSPFGGMSPRSPRTMEPTSPLSARLPSVGSPRNSTAWGTVGSPMGKVDWGVDSEELVRLRRPAQPGFGEDETDVSWVQSLVSNAELNGKRGEVQGMPGTSALMNRPDLNNQGDLLDQTVIGAWLEQMHLDQK

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Protein seq

MGELADLVVVPSQPPLAGGRRDRLAALLELAAADDVDGLRGALAEGGEEAAELADGVGLWYGRSKAYEARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVILAPPASPDALGDLEVLLGRRRALAVATSVASGSSSPPLSSSPDEGNRSPSSRSSSLSPITVDRGKKEYPVDPTLPDIKSSVYASDEFRMFAFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKHPYTAVPCPNFRRPGGCPSGDSCEFSHGVFESWLHPSQYRTRLCKEGAACARRICFFAHDEDELRHVPHNSGAGLLSPRASSSIDMTAAAALGLLPGSPTRHFAPPPVSPSAGSNGGAAAAHWLQGSRLRSSFNARDAAVDDLGMLLEWESQYLGALCLPPSSRPQPRLSAGLSIRPTIAPSNLEDMYASDMAMSPRFPNDQGHSVYSPAHKSALLNKLHQQKGLLSPVNTNRMYSPRALDPSSLAHSPFGGMSPRSPRTMEPTSPLSARLPSVGSPRNSTAWGTVGSPMGKVDWGVDSEELVRLRRPAQPGFGEDETDVSWVQSLVSNAELNGKRGEVQGMPGTSALMNRPDLNNQGDLLDQTVIGAWLEQMHLDQK

Function Zinc finger CCCH domain-containing protein 50 [UniProtKB/Swiss-Prot:Q84SL2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsMH63_07G0373700 OsMH63_07T0373700-mRNA-1 Chr07 24117477 24120613 + maker
CDS seq

ATGCCCCGGGCCCTCGTGTCAGCGACAGCGGAGGGAGGCGGGTCGGTTTGCGGTGGGGGATGCGAGGGACGTGGCGCCCGAGGAATTAGACCATTTAACTCGTCGCCACCACCACCAGTAAACTGCGAGTCCTCCTCCTCTTCTCGTCGCCGTGCTACTCTCGCTTTCTCTCTCTCTCTCTCTCACTTGTTCCCCAAGGCGAGAAGCAGCCGCCGCCGGCGAGCGTCGCGGGGGAGGGGAGGGAAGGGAGGGAGGAGCGGTGGATCCGGGCTTGATTGGATTGGGTCGGATTCGATTTTGGATCAACCCCGGAGGGCGGGAGCGGTTGCTACAGATGCGTTGAGCTTTGGTTAA

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Protein seq

MPRALVSATAEGGGSVCGGGCEGRGARGIRPFNSSPPPPVNCESSSSSRRRATLAFSLSLSHLFPKARSSRRRRASRGRGGKGGRSGGSGLDWIGSDSILDQPRRAGAVATDALSFG

Gene Transcript Chromosome Start End Strand Source
OsMH63_07G0373700 OsMH63_07T0373700-mRNA-2 Chr07 24118130 24120613 + maker
CDS seq

ATGGGCGAGCTTGCTGATCTCGTTGTCGTGCCGTCGCAGCCGCCGCTCGCCGGCGGCCGGCGGGACAGGCTGGCGGCGCTGCTGGAGCTCGCGGCGGCGGATGATGTTGATGGGCTCAGGGGGGCGCTCGCGGAGGGAGGCGAGGAGGCGGCGGAGTTGGCTGATGGGGTCGGGCTGTGGTATGGTCGGAGCAAGGCGTACGAGGCGCGCACGCCGCTGATGGTGGCGGCGACGTACGGCAGCGCCGGGGTGGTCTCGCTGCTGGTGGGCCTCGGCGGTTGCGTCGACGTCAACCGTCGCCCTGGAGCCGACGGCGCCACCGCGCTCCACTGCGCCGCCTCCGGTGGCTCGCGCAACGCCGTCGCTGTTGTCAAGCTGCTTTTGGCCGCTGGCGCCGATCCGGCCACCCCCGATTCCGCCGGCCGCTTCCCCGCCGACGTCATCCTAGCTCCTCCGGCTTCGCCAGATGCCCTTGGCGATCTCGAGGTGCTCCTCGGCCGCCGCCGAGCACTCGCCGTGGCGACCTCGGTGGCTTCAGGTTCGTCATCCCCTCCGCTCTCGTCCTCACCAGATGAGGGCAACAGGTCGCCCTCGTCGCGTTCGTCGTCGCTGTCTCCCATCACTGTGGATCGTGGGAAGAAGGAGTATCCGGTGGATCCAACTCTGCCGGACATCAAGAGCAGCGTGTATGCTTCGGATGAGTTCCGCATGTTTGCGTTCAAGGTCCGGCCCTGCTCCCGTGCCTACTCACACGACTGGACTGAGTGCCCGTTTGTGCACCCCGGCGAGAACGCCCGCCGCCGTGATCCCCGCAAGCACCCATACACTGCTGTGCCTTGCCCCAACTTTCGCCGGCCTGGTGGCTGCCCTAGCGGCGATAGCTGTGAGTTCTCGCATGGCGTGTTTGAGAGCTGGCTACACCCATCACAGTATCGCACAAGGCTCTGCAAGGAGGGAGCAGCTTGCGCCCGTCGCATTTGCTTCTTTGCCCATGATGAGGATGAGCTCCGCCATGTGCCTCACAACAGTGGTGCCGGCCTGCTGTCTCCCCGCGCTTCTTCATCCATTGATATGACTGCTGCAGCTGCGCTCGGGCTTCTTCCAGGTTCTCCTACCAGACACTTTGCACCGCCGCCTGTGTCACCATCTGCTGGGAGCAATGGAGGAGCTGCTGCTGCGCATTGGCTCCAAGGCAGTAGGCTGCGCTCTTCTTTCAATGCAAGGGATGCTGCTGTTGATGACCTTGGCATGCTCCTCGAATGGGAATCACAATACCTTGGGGCACTCTGCCTGCCACCCAGCAGCCGCCCCCAACCACGCCTTTCAGCTGGTCTGAGTATCAGGCCAACAATTGCTCCATCCAATCTTGAAGACATGTATGCTTCAGACATGGCAATGTCTCCGAGGTTCCCTAATGACCAAGGTCACTCAGTCTACTCACCAGCCCACAAATCAGCCCTCCTCAACAAGCTTCATCAACAGAAGGGCCTCTTATCACCTGTTAACACCAACAGAATGTACTCCCCAAGGGCTCTTGATCCTTCATCTTTGGCACATTCTCCATTTGGTGGCATGTCTCCCCGGTCCCCCCGTACCATGGAACCTACATCACCCCTAAGTGCTCGTCTGCCTTCTGTTGGTTCACCACGGAATTCCACTGCTTGGGGCACCGTGGGGTCCCCGATGGGTAAGGTTGACTGGGGTGTCGATAGCGAGGAGCTAGTCCGCTTGAGACGCCCTGCACAACCAGGGTTTGGAGAAGATGAGACAGATGTATCATGGGTGCAGTCACTGGTAAGCAATGCTGAGCTTAATGGCAAGAGGGGCGAAGTACAAGGCATGCCTGGTACTTCTGCATTGATGAACAGGCCTGACCTGAACAATCAGGGTGACTTGTTGGACCAGACGGTGATCGGTGCTTGGCTTGAGCAGATGCACCTGGATCAGAAGTGA

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Protein seq

MGELADLVVVPSQPPLAGGRRDRLAALLELAAADDVDGLRGALAEGGEEAAELADGVGLWYGRSKAYEARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVILAPPASPDALGDLEVLLGRRRALAVATSVASGSSSPPLSSSPDEGNRSPSSRSSSLSPITVDRGKKEYPVDPTLPDIKSSVYASDEFRMFAFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKHPYTAVPCPNFRRPGGCPSGDSCEFSHGVFESWLHPSQYRTRLCKEGAACARRICFFAHDEDELRHVPHNSGAGLLSPRASSSIDMTAAAALGLLPGSPTRHFAPPPVSPSAGSNGGAAAAHWLQGSRLRSSFNARDAAVDDLGMLLEWESQYLGALCLPPSSRPQPRLSAGLSIRPTIAPSNLEDMYASDMAMSPRFPNDQGHSVYSPAHKSALLNKLHQQKGLLSPVNTNRMYSPRALDPSSLAHSPFGGMSPRSPRTMEPTSPLSARLPSVGSPRNSTAWGTVGSPMGKVDWGVDSEELVRLRRPAQPGFGEDETDVSWVQSLVSNAELNGKRGEVQGMPGTSALMNRPDLNNQGDLLDQTVIGAWLEQMHLDQK

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 8.715991 20.091009 23.739906

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_07g0568300 RBH 2.552097 2.605654 5.294751
Nipponbare | IRGSP 1.0 | MSU LOC_Os07g38090 RBH 1.714317 1.740798 1.316836
Nipponbare | IRGSP 1.0 | RAP-db Os07g0568300 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_07g0020020 RBH 0.527224 12.269720 6.379474
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_07g0019940 RBH 0.311196 4.597632 3.444797
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_07g0019900 RBH 1.613139 10.018869 7.315614
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_07g0019790 RBH 0.224901 0.600062 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_07g0019840 RBH 9.300345 16.610228 15.906534
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_07g0020310 RBH 0.320855 1.013338 2.011745
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_07G0386100 RBH 12.453307 24.9361305 15.8007115
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_07g0019640 RBH 1.017830 0.764436 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_07g0019740 RBH 0.981636 10.584256 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_07g0019690 RBH 2.685237 25.560699 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_07g0019860 RBH 0.914169 1.850220 2.268880
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_07g0019650 RBH 0.159637 9.908466 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_07G019560 RBH 0.549757 3.204649 3.066586
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_07g0019650 RBH 3.274678 11.785472 10.552988
Os XI: R9311 | R9311 | AGIS R9311C07g26913 RBH None None None
Os XI-adm: HZ | HZ | PKU OsHZ_07g0237800 RBH None None None
Os XI-adm: J4155S | J4155S | PKU OsJ4155_07g0244400 RBH None None None
Os XI-adm: LK638S | LK638S | PKU OsLK638S_07g0236200 RBH None None None
Os XI-adm: XL628S | XL628S | PKU OsXL628S_07g0245300 RBH None None None
Os GJ-temp: 02428 | 02428 | SICAU Os02428G0712443100.01 RBH None None None
Os cB: Basmati1 | Basmati1 | SICAU OsBasmati1G0725881300.01 RBH None None None
Os O.glaberrima: Ogla | OglaRS2 | DIADE Oglab_026665 RBH None None None
Os XI-1A: CN1 | CN1 | SICAU OsCN1G0723090500.01 RBH None None None
Os XI-1A: D62 | D62 | SICAU OsD62G0725041300.01 RBH None None None
Os XI-1A: DG | DG | SICAU OsDGG0716662500.01 RBH None None None
Os GJ-temp: DHX2 | DHX2 | SICAU OsDHX2G0719694700.01 RBH None None None
Os XI-adm: FH838 | FH838 | SICAU OsFH838G0720907100.01 RBH None None None
Os XI-1A: FS32 | FS32 | SICAU OsFS32G0716378300.01 RBH None None None
Os XI-1A: G46 | G46 | SICAU OsG46G0713780700.01 RBH None None None
Os XI-adm: G630 | G630 | SICAU OsG630G0712357100.01 RBH None None None
Os XI-1B: G8 | G8 | SICAU OsG8G0716648700.01 RBH None None None
Os XI-1A: II32 | II32 | SICAU OsII32G0724810100.01 RBH None None None
Os XI-1B: J4155 | J4155 | SICAU OsJ4155G0717001300.01 RBH None None None
Os GJ-temp: Kosh | Kosh | SICAU OsKoshG0720085900.01 RBH None None None
Os GJ-temp: KY131 | KY131 | SICAU OsKY131G0715317500.01 RBH None None None
Os GJ-trp: Lemont | Lemont | SICAU OsLemontG0712484900.01 RBH None None None
Os GJ-adm: LJ | LJ | SICAU OsLJG0712471300.01 RBH None None None
Os GJ-sbtrp: NamRoo | NamRoo | SICAU OsNamRooG0719360100.01 RBH None None None
Os XI-1B: R498 | R498 | SICAU OsR498G0714596900.01 RBH None None None
Os XI-1B: R527 | R527 | SICAU OsR527G0715637300.01 RBH None None None
Os XI-1B: S548 | S548 | SICAU OsS548G0731679300.01 RBH None None None
Os XI-2: TM | TM | SICAU TMG0720633500.01 RBH None None None
Os XI-3: Tumba | Tumba | SICAU OsTumbaG0716058900.01 RBH None None None
Os XI-adm: WSSM | WSSM | SICAU OsWSSMG0712390700.01 RBH None None None
Os XI-1B: Y3551 | Y3551 | SICAU OsY3551G0717774300.01 RBH None None None
Os XI-1B: Y58S | Y58S | SICAU OsY58SG0718208700.01 RBH None None None
Os XI-adm: YX1 | YX1 | SICAU OsYX1G0721400900.01 RBH None None None
Os GJ-temp: ZH11 | ZH11 | SICAU OsZH11G0717429100.01 RBH None None None
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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