Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_07G0034500 | OGI:07005880 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr07:2121729-2123395 | ||||||||
| Gene Symbol | OsC3H48,C3H48 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | CTAGTAGGAATGCCGGAAACCACAGGTGTCACCGCGGGGGCAGGTCTGACCGGAGAAGAAATACCAGCACGGCTCCTTCTTCCCAAGCTCCACCTCCCCATGCGCGAACCTGCAGTTGGCTGCAAACAGGCATAATCCACCACTCGTGAACGTCTTGCATAGCTTCGTCTTGTACTTGTCTTCCCCTCCCAAAGCGGCGAAGGACGAATCCTGCAAAGGCAAACGAATGCATATATGATCAAAAGTTCAAAACCAAAAATGAAATCTGCATCGACTCTGTATAGTAAATTAAATCTGGATGCATGAGGACAAGATGACTAGGTATTGCGTGGTAGATCGAATCAATCAGTTATATATATATTGAAGACGAAATCAATTAAACTCACCGAGGACGAGGAGCCCTCACCGGCGTCGGCTAGAGAGCTCACCGCCACCACCAAACGCAGGTCATCTTCTCCATGGGCGTACTTGCATGTGTTGCCACGAGGACAACCAAGCCCACGGGAATAATATTCCGCGCACAGCTTCGTCTTGTGTTCCTCCAGTCCGAATGCCAGCTGCTGTAGCGGTCGCGCTGCTGGTCCAGCTCCGGCGGCGATGGGGGCGAATGACGGCGGCGGAGCATAGGGTGCGCCGGGAATGGGCACGAACTCGAACCGCCCACGCCCAGTGACGGTGGAGGCCGGTGTGTGTGCAGCCTCTCGCGCCAGGATCGAACGCCGAGTCCACTCGGAGTCGGAGAGCGGTGAGGAACAGCGCACTAACCAGGCACGGCTAGCGGCGGAGCACGGCGGCGGCGCTGACGACGGGCCGACCAACTCGCGGTCGAGCGGAGAATCGAAGGCCGTGGCGTACGGGAGACCGAGGAATGGGGACACGTGGCCGGCTTCTGCGAGCGCGGACGAGGTGATGTAGTGGCGGTACCGGTAACCGGCGGCGGGGGCGGATGAGGAGAGGGCGGAATAGAGGTCCTGGCGCCCACGGGTGGTGGGGACGAAGGCGGGGGCATCTGCGTTGAGGTGGCCACCGGGGACAGGGCCGACTACGCCGTCGACGAGTAGGTCGAGGTCGAGGTCGGCGACGAGGTCGTCGGGGTGGTCCTCCTCACCATCGTGGCCGCCGGGGACGAAGACGTGGCGGCCGCCGGATCCCTCCTCCTCCTGGCCGCCGCTGCTGGGGACGAGGGGCCCGTCGTCGATGTAGTGCTCCTCCTCCTCCTCCTCCTCCTCCTCGGCGAGGTGGTCGTCGTCGGCGTGGTCGGCACTATCCTCCGCCATGCTGCTGGTCGGCAGAGCACCAAAACCGGTCGCGGGGAGGCGCCTGGTCGCGCTGGTGCCGGCACCCATGGAGCCTGACCCGACCCCGAACTTCATGCCGACGAGCTCGCCCTGGAAGACCGGCGCGTGGATGCTGCCGACGAGGATGCTCGGGGTGACGTGGACTGGCTGCGGCGGGGAGGAGGTGGCGCCGCCTGCGTCTCGGCCGACGGGGACGCCAACGCCAGAGCGGTAATCCTCAGCGACGTGGCCGCCGGGGACGACGACGTCGCGGCCGCCGGATCCCTCCTCCTCCTGGCCGCCGCTGCTGGGGACGAGGTGCCCGTCGTCGTCGTAGCGCTGCTCCGTCGTCGTCGTCGCAACGTGATCTCCATCCTCCGAGTCCGCCAT
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| CDS seq | MADSEDGDHVATTTTEQRYDDDGHLVPSSGGQEEEGSGGRDVVVPGGHVAEDYRSGVGVPVGRDAGGATSSPPQPVHVTPSILVGSIHAPVFQGELVGMKFGVGSGSMGAGTSATRRLPATGFGALPTSSMAEDSADHADDDHLAEEEEEEEEEHYIDDGPLVPSSGGQEEEGSGGRHVFVPGGHDGEEDHPDDLVADLDLDLLVDGVVGPVPGGHLNADAPAFVPTTRGRQDLYSALSSSAPAAGYRYRHYITSSALAEAGHVSPFLGLPYATAFDSPLDRELVGPSSAPPPCSAASRAWLVRCSSPLSDSEWTRRSILAREAAHTPASTVTGRGRFEFVPIPGAPYAPPPSFAPIAAGAGPAARPLQQLAFGLEEHKTKLCAEYYSRGLGCPRGNTCKYAHGEDDLRLVVAVSSLADAGEGSSSSDSSFAALGGEDKYKTKLCKTFTSGGLCLFAANCRFAHGEVELGKKEPCWYFFSGQTCPRGDTCGFRHSY
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| Protein seq | MADSEDGDHVATTTTEQRYDDDGHLVPSSGGQEEEGSGGRDVVVPGGHVAEDYRSGVGVPVGRDAGGATSSPPQPVHVTPSILVGSIHAPVFQGELVGMKFGVGSGSMGAGTSATRRLPATGFGALPTSSMAEDSADHADDDHLAEEEEEEEEEHYIDDGPLVPSSGGQEEEGSGGRHVFVPGGHDGEEDHPDDLVADLDLDLLVDGVVGPVPGGHLNADAPAFVPTTRGRQDLYSALSSSAPAAGYRYRHYITSSALAEAGHVSPFLGLPYATAFDSPLDRELVGPSSAPPPCSAASRAWLVRCSSPLSDSEWTRRSILAREAAHTPASTVTGRGRFEFVPIPGAPYAPPPSFAPIAAGAGPAARPLQQLAFGLEEHKTKLCAEYYSRGLGCPRGNTCKYAHGEDDLRLVVAVSSLADAGEGSSSSDSSFAALGGEDKYKTKLCKTFTSGGLCLFAANCRFAHGEVELGKKEPCWYFFSGQTCPRGDTCGFRHSY |
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| Function | Putative zinc finger CCCH domain-containing protein 48 [UniProtKB/Swiss-Prot:Q8GVZ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_07G0034500 | OsMH63_07T0034500.1 | Chr07 | 2121729 | 2123395 | - | maker | ||
| CDS seq | ATGGCGGACTCGGAGGATGGAGATCACGTTGCGACGACGACGACGGAGCAGCGCTACGACGACGACGGGCACCTCGTCCCCAGCAGCGGCGGCCAGGAGGAGGAGGGATCCGGCGGCCGCGACGTCGTCGTCCCCGGCGGCCACGTCGCTGAGGATTACCGCTCTGGCGTTGGCGTCCCCGTCGGCCGAGACGCAGGCGGCGCCACCTCCTCCCCGCCGCAGCCAGTCCACGTCACCCCGAGCATCCTCGTCGGCAGCATCCACGCGCCGGTCTTCCAGGGCGAGCTCGTCGGCATGAAGTTCGGGGTCGGGTCAGGCTCCATGGGTGCCGGCACCAGCGCGACCAGGCGCCTCCCCGCGACCGGTTTTGGTGCTCTGCCGACCAGCAGCATGGCGGAGGATAGTGCCGACCACGCCGACGACGACCACCTCGCCGAGGAGGAGGAGGAGGAGGAGGAGGAGCACTACATCGACGACGGGCCCCTCGTCCCCAGCAGCGGCGGCCAGGAGGAGGAGGGATCCGGCGGCCGCCACGTCTTCGTCCCCGGCGGCCACGATGGTGAGGAGGACCACCCCGACGACCTCGTCGCCGACCTCGACCTCGACCTACTCGTCGACGGCGTAGTCGGCCCTGTCCCCGGTGGCCACCTCAACGCAGATGCCCCCGCCTTCGTCCCCACCACCCGTGGGCGCCAGGACCTCTATTCCGCCCTCTCCTCATCCGCCCCCGCCGCCGGTTACCGGTACCGCCACTACATCACCTCGTCCGCGCTCGCAGAAGCCGGCCACGTGTCCCCATTCCTCGGTCTCCCGTACGCCACGGCCTTCGATTCTCCGCTCGACCGCGAGTTGGTCGGCCCGTCGTCAGCGCCGCCGCCGTGCTCCGCCGCTAGCCGTGCCTGGTTAGTGCGCTGTTCCTCACCGCTCTCCGACTCCGAGTGGACTCGGCGTTCGATCCTGGCGCGAGAGGCTGCACACACACCGGCCTCCACCGTCACTGGGCGTGGGCGGTTCGAGTTCGTGCCCATTCCCGGCGCACCCTATGCTCCGCCGCCGTCATTCGCCCCCATCGCCGCCGGAGCTGGACCAGCAGCGCGACCGCTACAGCAGCTGGCATTCGGACTGGAGGAACACAAGACGAAGCTGTGCGCGGAATATTATTCCCGTGGGCTTGGTTGTCCTCGTGGCAACACATGCAAGTACGCCCATGGAGAAGATGACCTGCGTTTGGTGGTGGCGGTGAGCTCTCTAGCCGACGCCGGTGAGGGCTCCTCGTCCTCGGATTCGTCCTTCGCCGCTTTGGGAGGGGAAGACAAGTACAAGACGAAGCTATGCAAGACGTTCACGAGTGGTGGATTATGCCTGTTTGCAGCCAACTGCAGGTTCGCGCATGGGGAGGTGGAGCTTGGGAAGAAGGAGCCGTGCTGGTATTTCTTCTCCGGTCAGACCTGCCCCCGCGGTGACACCTGTGGTTTCCGGCATTCCTACTAG
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| Protein seq | MADSEDGDHVATTTTEQRYDDDGHLVPSSGGQEEEGSGGRDVVVPGGHVAEDYRSGVGVPVGRDAGGATSSPPQPVHVTPSILVGSIHAPVFQGELVGMKFGVGSGSMGAGTSATRRLPATGFGALPTSSMAEDSADHADDDHLAEEEEEEEEEHYIDDGPLVPSSGGQEEEGSGGRHVFVPGGHDGEEDHPDDLVADLDLDLLVDGVVGPVPGGHLNADAPAFVPTTRGRQDLYSALSSSAPAAGYRYRHYITSSALAEAGHVSPFLGLPYATAFDSPLDRELVGPSSAPPPCSAASRAWLVRCSSPLSDSEWTRRSILAREAAHTPASTVTGRGRFEFVPIPGAPYAPPPSFAPIAAGAGPAARPLQQLAFGLEEHKTKLCAEYYSRGLGCPRGNTCKYAHGEDDLRLVVAVSSLADAGEGSSSSDSSFAALGGEDKYKTKLCKTFTSGGLCLFAANCRFAHGEVELGKKEPCWYFFSGQTCPRGDTCGFRHSY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0.035845 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0139000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g04650 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0139000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0002420 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0002420 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0002310 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0002240 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0002360 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0002440 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0040000 | RBH | 0 | 0 | 0.008143 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0002480 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0002490 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0002470 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0002550 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0002440 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G002550 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0002380 | SBH | 0.0 | 0.0 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | R9311C07g25069 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_07g0027300 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_07g0031200 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_07g0031600 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_07g0032000 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0711348600.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0724017400.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_024711 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0721186600.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0723099400.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0714816000.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0717204200.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0718990200.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0715124800.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0712563600.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0711292200.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0714712200.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0722912200.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0715134800.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0717560600.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0712682600.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0711361400.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0711363400.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0717090200.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0713486000.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0714214200.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0729081400.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0718674000.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0714147600.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0711371400.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0715894400.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0716344200.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0719360200.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0714994600.01 | RBH | None | None | None |
