Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_06G0446500 | OGI:06080010 | 48/50 | Minghui 63 | MH63RS3 | HZAU | Chr06:29365453-29370624 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | CTAGTCCACAAGAACATCATCATCATCACCGCCCTCATACTGTAAGCAAAATAGGGCACAAATTGTCAGGATGATGCTCTGAGAAAAATACCAAGGCAATGTTTGGAAACGGAAGCATAATACTAGTGGGAGGGAATTATGTGGAGGACGTATATTAGAAAAAAAATTAAAACATGGAAAGAGATCAAGAAATAAAAGAAAATCATGCAATTACCAAATGCTGTCAGAGTTGTTTTAGATATCAAATTTGGATCATAAAGAACACATATGATACATATAAATCATGCAATTACCATATGGTGTCACGAAGTTATTCTAGTTATCAAACTTGGATCACAGAACACAAATGATTCATTTAGAACCAATCAGCAAAACCTTGAAACTGATGGATTATAGTATTCTGGTTATTAGCTGCTAATGAACAAACATTAGATTATCGGATTTGATTCTAGCCAAACGAGCTACCAGATTTGATAATAAACAAAAAGGAAATCAACTTTGAATCATAACATTAGCTAATTTTTACTGAGAAATAGCAACGAGCAACTAGCAACCACAGAGAATATAAAGAGAATAAGCAAGAAAGCATCTCACCCTATCTGTAAAAACATTTGCAGAAGAAACAACATTTCCTTTCTCATTGTTGTCACCATCCCCCAAATTCTTCTTCACAGATAATAGTTCTTTTGCCTCAGTTCCCTTGCTGCTCTGAAAAGGTTCTAGAGCATCTTCTGGTCTATATTTCTCTGACATAGGATCCCTGTTGTCATAACTCTCTCTCCTTTTCTTCCCTGAAGAAGCCACAGGTGAGAGTAACAGGATGTCAATCATTTGTTTATTTACCACAGAGGAAAATCATGGATGTGTCTAATATCTAGTTGGCAGCGTTAATACGGACAAACCATTCGACTATTAAATAGATATCTCCAAACATGTCATCTAGTTAGCTTACCATTCCTTCCTTCTTCGCTAGTTGAGAGGGCAACGGATCTTTTTCTAGTTGTTTCATGATTCTGCCGTTGATCACTTGGACTCATTTCATAAGCATTATATGGATCTTCCTTAGCAGCACTAGAACCCTGATCCTTGCTACACGGCTTCAAGGTATCTGAAGCAAGCAAATCAGCGAACCTCTCAAAACGAGCTTGCGACCTGCACCCCCTTTAATGTGTTAATAGATGTAAAGACTAAAAAAAGGGTTGTCTTCTCATATAGACAAAATAGAAGTATGCAGATCAGATAGGTGACAAACAGGAAACCTGCCTCTTTAAATCATCCTGAGCTTTCACATAGCGTGCATGTGCTTTGATGAGTTTCTTTGTTTTTGAGGCCATCCTAAGTGACAGAGCAGTATTATGAATAGTCAGACGACATGGGGATATTTTTAATCAGCTGAAGAATCCACAAACTGATGTTTTTGTCAAAAAGAGAGAAGATTATGCTCATGTGTTGTAGAAATAAAAAACCTTTCGCAAGCTTCTTTTTCATCGTTCAATTGTGATTCAAGATCAGCTATTCTGCTAGAAAGTTTGGATGCTTCATTGATCTTGCCATTCAGTATCACCTATAATACAAGGAAGAAGGATGCATCAATAGGGTACAATATCAACATACAGGCAAGAATGAACAATAAGAAGAATTTGAAACACCTCAAGAGTACAATAAGTGCAACAGGCGCAACTAAAAGAGATTCAAGAAGTGTATCATTTGTCACTTAAAAAGGTAAACTAGCCATCAATTTGTTCAATTGTAGCATCAGTTAACGTCAATATTGACACATCATATCTGGAGCCATCTGATTATATCTGAATGGATTGAACATCTTATGAACTTTACTCAACACAAAAGTTCCCACAGATAATCATTATAGTTAAGGCAGGAAAACAAAACAGAAAAATTGGAGCAGTCCAAAATTTATATAAACTAAACATAAATTGCAGCCAAGTGGTAGAATGCTCAACACAATCCATGTAGTGCAGGTATCAGCTTTTCAAATGTGCATGCATATAATAATAAAGCAGAAGTAACTAATGGTTGTGCTGGACATGTAACATATGTATGAAGAACATTATACCTCCAGTGAAGATTTCTCCTCATGTAATGCTTCCATATCCAGTTGAATGCGTTGCAGCTGCATAACATAAGCAAATATATAAAAGAGATTCAGTAGCATTGGGACGACTATAACTGTTTGCTAGCGAGATGGATTGCATAGATCATAATCAAACCTGTGCTTCATTATCATGTTTATCATCAGCTTTGTTGAATCTATCATCCTTTTTTCTATCTTCGTTATCAGAGGAGTTCAAACTTTCTGATGAATTAGTTTTTCCACCCTCAAGCTTCTTTCTATGCCTTCCCTCAATGAAAGATCCATGGAATACATAAATACAATTGCACCAAACGACCAAATTGCAAGACAAAAACATGCAGCGGTTACATGGCAACATAGTAGAACTATCTTTCGTGAAAACAACAAACCCAAAGGGTTCCCTCATTAAACAGAGCAAGATAAGATAGTATTATACTCTACAGTAGGTTGCTGTATAAACACTGCATTAAATGGTGCAACAAATAATAATTTTCTTGAAAATTTTGAAAAAAGAATCATTTGTATGAGAGGATTAATATACACATTTCTCAGCTTGCATATTTAACAAAATGGTCCTGTGAACATAATTACTTGCATGGAAGCCTAAGAGCAACATGTTTATATTTGTCTGATACTCTGATGTGTATGTAGTTGTGTAGTTTGTAATTTATAAGTATATCAACAAGCACAAGTGCCTTTAACATAAGCATGCCCCAGGCTACCTGCTAACCCTTGGGTGCATCACAAGCAAAGGGCATTAACAATTAGCAGGAACCAAGTCATTCGGTCACATGAAGGTAGACTATATGCCCAATAAAATAGATAAAAACAGGCATAACCACATGTAAGGACTCGATTACAAAGATGTATGTATACCCTAGCCCCATACCTCTTCCTGATGGGAGATCTTGAATGACTAGAGCCTGCAGGGAAGATTTCAACATACAAAAGTTCAGAGATTATATAGAAGTTTAAAAATAGAATAGACTAGTTACAACGAAGAATTTTATTGGTAGCATATTACCTCTATCTCGAGAGCGCGGTCTGTGATCACGGAACAAATGATCCCTGGCATCTCTTTCAGGGGAATTCCTCCTATGGGGTCTCAGATGCCTACCTCTAAAGTCATCAGGTCTATGGTCTCGTCTCCCTACAATTCAGTATGGTAGTTTTTACATACATATATGTACAAAGAAGCAATATGCCACAAAAGATAGAGGAGCTATACACATATGAGGCAGCACACAAACCCATTAAGCTTACCACAACCTTGAGCCATATGATTATTCAATTATCAGTAAGTAGCAGAGGCACCAACATAACCCCAGGGGGGCATAAAAGAGCAGATCCAATGAGACTAATGCATGAGGGAGACCAATATATGATCACATATCACGTGTATGATGCACCACTTAAAAAATAAATCCAGCACCTTGTAACGTGTCAGTCATGAGAAGTGAATAATGGATGGAATATCCAATTTTTGACATCATACTGAGATTATCACGAAGAAAGATCTTCCAAATTCCAATATTGTCGAACAAACCTAATTCCACTTGTCCAGATATTATTGGTATTGACTTCAAATTTTATATTTCTGTGATCATACTTGGAATGGCAGGCAAGAATAAAGCCCAAGAGGAGACCTTGCCGCTGTGTATTCAGCAAATTTGTTACAATTAGTTGCAAAAGCTGCTAGGTGCTTTAGCACATTAAGATAACATGCATCTGACTGAAACCACATGATATCCCTCAAGAAATCTCCTGTAGCAAGATAAGCATTCCAGCGACCATAAAATGTCTGATTACCAACTGAAAAGGTGTGCAATGAAAATAGGATGCGTCATCCTCTGCAAGTAGTCGGTTGGAGAAAATCTCTCTGGGAACAGCTAATTTGTACAGTAGCAAAAATATGATTAGCAAAGATGTCACATTGTTCATGAAACTTTGGCAGCCAAAGTACTATAAGAAAAGGATAATATATGGGCGATAAAACAGTACAACAAAATGATATCACACAAACTGATGGAATTATTACGCTCTAGTTTTGTATATAAATGACTCTAGTGCTGATATCACATGACCAGGTGCAGGCTGTAGAGTATATTTCTTCCAACAAGTAGCCAGAGATAGAAACCAGGTCATCAGTGTTTATCTTACAGGGCAGCTCTTGTCAGATGTTACCATGGTTGGTATTCTTCTAATCATTTTCTCTTACTACTAGCTCAGTTCCACAACATTTCCAAAAGTTTCTGCAGAAAGCACACAGCGCAGATGGAATTGATATCTCTTTCACTTCGCTGTACAACCAGCATCCCGCACTGTCTGTCATATTCCCCACATATGCAGCCCATCCTCTCAGGATTTATAAACGAAATCCAACATAAACAGATGAAACGATGTATACTCCTATTTTAAAAAGAATGCTCTTTCTTGGGGCCATGGTAGGACACCATGAATCTTCTCAAAATATGAATATCCCCCAAACTTTTCAAACTGATAGCAGATCACACTCAACCCAGTTTCACTCCGTCTGAATAATTTCCTAGAAAACAATCGGCACAATCTGTCCACAATAGAACATCGGCGGAGACAGTAATTCCATTGCAGAAGAACAGATTTAGAGCCACCTAGCTGCGGATCGAGAGCACACGGCAACCGCCGAGAAGCAGAAAAGCAGATGGGAAGGGGAGAGCGAGACGGGGAAGGGGAGGAGGGAGAGGGGGTGCGCGCATACCAGGTCCACCGCGAGGCGGGAACGGGGAACGAGGCGGCGGGCCACGGAGCTCGGCGTCGCCGTGGGCGAAGCTGCAGGAGGCGCGGTTGCACTCGCCTTGCCTCCACAGCGCGCACAGCTTCGTCTTGTACGCCGGGCCGCGGCGGGGAGGACCCATCATCTCCCTCATCTCTCTTTCACCAACCCAACCCTTCTCCCGCGGCGGCGGCGGCGGCGGCGAGGAGGAGGAGGAGACGAGACGTGGCGGCGGCCAGTGGGGAGACGAGAAGAGCAAAGCACGAGTGCCGCACGGCGAGTTCGGGAGACGGGACGACGACGACGACGACGACGAAATGGGCCTCAT
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| CDS seq | MRPISSSSSSSSRLPNSPCGTRALLFSSPHWPPPRLVSSSSSPPPPPPREKGWVGEREMREMMGPPRRGPAYKTKLCALWRQGECNRASCSFAHGDAELRGPPPRSPFPPRGGPGRRDHRPDDFRGRHLRPHRRNSPERDARDHLFRDHRPRSRDRGSSHSRSPIRKRHRKKLEGGKTNSSESLNSSDNEDRKKDDRFNKADDKHDNEAQLQRIQLDMEALHEEKSSLEVILNGKINEASKLSSRIADLESQLNDEKEACERMASKTKKLIKAHARYVKAQDDLKRSQARFERFADLLASDTLKPCSKDQGSSAAKEDPYNAYEMSPSDQRQNHETTRKRSVALSTSEEGRNGKKRRESYDNRDPMSEKYRPEDALEPFQSSKGTEAKELLSVKKNLGDGDNNEKGNVVSSANVFTDRYEGGDDDDVLVD
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| Protein seq | MRPISSSSSSSSRLPNSPCGTRALLFSSPHWPPPRLVSSSSSPPPPPPREKGWVGEREMREMMGPPRRGPAYKTKLCALWRQGECNRASCSFAHGDAELRGPPPRSPFPPRGGPGRRDHRPDDFRGRHLRPHRRNSPERDARDHLFRDHRPRSRDRGSSHSRSPIRKRHRKKLEGGKTNSSESLNSSDNEDRKKDDRFNKADDKHDNEAQLQRIQLDMEALHEEKSSLEVILNGKINEASKLSSRIADLESQLNDEKEACERMASKTKKLIKAHARYVKAQDDLKRSQARFERFADLLASDTLKPCSKDQGSSAAKEDPYNAYEMSPSDQRQNHETTRKRSVALSTSEEGRNGKKRRESYDNRDPMSEKYRPEDALEPFQSSKGTEAKELLSVKKNLGDGDNNEKGNVVSSANVFTDRYEGGDDDDVLVD |
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| Function | Zinc finger CCCH domain-containing protein 13 [UniProtKB/Swiss-Prot:Q6H7U2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_06G0446500 | OsMH63_06T0446500.1 | Chr06 | 29365453 | 29370624 | - | maker | ||
| CDS seq | ATGAGGCCCATTTCGTCGTCGTCGTCGTCGTCGTCCCGTCTCCCGAACTCGCCGTGCGGCACTCGTGCTTTGCTCTTCTCGTCTCCCCACTGGCCGCCGCCACGTCTCGTCTCCTCCTCCTCCTCGCCGCCGCCGCCGCCGCCGCGGGAGAAGGGTTGGGTTGGTGAAAGAGAGATGAGGGAGATGATGGGTCCTCCCCGCCGCGGCCCGGCGTACAAGACGAAGCTGTGCGCGCTGTGGAGGCAAGGCGAGTGCAACCGCGCCTCCTGCAGCTTCGCCCACGGCGACGCCGAGCTCCGTGGCCCGCCGCCTCGTTCCCCGTTCCCGCCTCGCGGTGGACCTGGGAGACGAGACCATAGACCTGATGACTTTAGAGGTAGGCATCTGAGACCCCATAGGAGGAATTCCCCTGAAAGAGATGCCAGGGATCATTTGTTCCGTGATCACAGACCGCGCTCTCGAGATAGAGGCTCTAGTCATTCAAGATCTCCCATCAGGAAGAGGCATAGAAAGAAGCTTGAGGGTGGAAAAACTAATTCATCAGAAAGTTTGAACTCCTCTGATAACGAAGATAGAAAAAAGGATGATAGATTCAACAAAGCTGATGATAAACATGATAATGAAGCACAGCTGCAACGCATTCAACTGGATATGGAAGCATTACATGAGGAGAAATCTTCACTGGAGGTGATACTGAATGGCAAGATCAATGAAGCATCCAAACTTTCTAGCAGAATAGCTGATCTTGAATCACAATTGAACGATGAAAAAGAAGCTTGCGAAAGGATGGCCTCAAAAACAAAGAAACTCATCAAAGCACATGCACGCTATGTGAAAGCTCAGGATGATTTAAAGAGGTCGCAAGCTCGTTTTGAGAGGTTCGCTGATTTGCTTGCTTCAGATACCTTGAAGCCGTGTAGCAAGGATCAGGGTTCTAGTGCTGCTAAGGAAGATCCATATAATGCTTATGAAATGAGTCCAAGTGATCAACGGCAGAATCATGAAACAACTAGAAAAAGATCCGTTGCCCTCTCAACTAGCGAAGAAGGAAGGAATGGGAAGAAAAGGAGAGAGAGTTATGACAACAGGGATCCTATGTCAGAGAAATATAGACCAGAAGATGCTCTAGAACCTTTTCAGAGCAGCAAGGGAACTGAGGCAAAAGAACTATTATCTGTGAAGAAGAATTTGGGGGATGGTGACAACAATGAGAAAGGAAATGTTGTTTCTTCTGCAAATGTTTTTACAGATAGGTATGAGGGCGGTGATGATGATGATGTTCTTGTGGACTAG
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| Protein seq | MRPISSSSSSSSRLPNSPCGTRALLFSSPHWPPPRLVSSSSSPPPPPPREKGWVGEREMREMMGPPRRGPAYKTKLCALWRQGECNRASCSFAHGDAELRGPPPRSPFPPRGGPGRRDHRPDDFRGRHLRPHRRNSPERDARDHLFRDHRPRSRDRGSSHSRSPIRKRHRKKLEGGKTNSSESLNSSDNEDRKKDDRFNKADDKHDNEAQLQRIQLDMEALHEEKSSLEVILNGKINEASKLSSRIADLESQLNDEKEACERMASKTKKLIKAHARYVKAQDDLKRSQARFERFADLLASDTLKPCSKDQGSSAAKEDPYNAYEMSPSDQRQNHETTRKRSVALSTSEEGRNGKKRRESYDNRDPMSEKYRPEDALEPFQSSKGTEAKELLSVKKNLGDGDNNEKGNVVSSANVFTDRYEGGDDDDVLVD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.6928885 | 22.9906835 | 27.4906435 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0682800 | RBH | 1.543415 | 0.660057 | 2.809028 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g46890 | RBH | 1.035099 | 0.439444 | 0.945778 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0682800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0026590 | RBH | 0.377998 | 9.376039 | 5.912357 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026430 | RBH | 0.120463 | 2.587331 | 3.361584 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0026590 | RBH | 1.232681 | 1.304338 | 9.367763 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0026210 | RBH | 0.000000 | 0.299144 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0026690 | RBH | 6.725781 | 19.300280 | 14.915159 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0056700 | SBH | 19.766378 | 53.770962 | 89.348572 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026090 | RBH | 0.180435 | 0.317146 | 0.616732 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0428700 | RBH | 5.1587375 | 20.7163355 | 22.235402 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026540 | RBH | 0.138372 | 0.435626 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0026640 | RBH | 0.491676 | 5.503461 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0026260 | RBH | 6.024992 | 14.378775 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0026900 | RBH | 0.706407 | 0.412710 | 0.873265 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0026510 | RBH | 0.203418 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G026400 | RBH | 0.270550 | 3.043574 | 1.371678 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0026470 | RBH | 1.915543 | 24.184689 | 5.989247 |
| Os XI: R9311 | R9311 | AGIS | R9311C06g24378 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_06g0307900 | SBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_06g0324800 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_06g0298500 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_06g0313400 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0611089200.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0623607000.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_020852 | SBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0620780000.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0622697000.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0614410400.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0616701200.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0618560600.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0614841000.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0612287800.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0611033000.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0614352000.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0622508400.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0614741200.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0617052200.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0612343800.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0611093400.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0611092400.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0616619200.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0613199400.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0613876800.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0628538400.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0618290600.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0613767800.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0611102800.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0615460000.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0615926600.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0618972800.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0614490600.01 | RBH | None | None | None |
