Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_06G0071700 | OGI:06011990 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr06:4002979-4005466 | ||||||||
| Gene Symbol | OsbHLH115,RHL1,OsRHL1,bHLH115 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | TTTTTTTTTAAAGATATAAATGGACATGTCATGATGTTTTAATCTGCTTCTGATCGCGGCGTGTATGATAAATAACTTAAAGTGGTATATAGAATTCAGCGTCATTTCGTCTTCTCTTTAACAAATGATTAAGAGAAGGGAAAAAAAACAGAAAGAAAAAGGAGTATACAACGATACAGTAATCTTGGTCGCCACGGCCGGACAGCTTCGATCATTGCGTCCCGCCGGCGCCGCCGTCCGCCTTTGCGTGCCGTGGGTCATCGCCGTTAGACATCGCCGCCGGCGAGGTCGGGCCGGCGGCATCGAGCATCGTCTGCGGCGGCGCGCCGGCGTGGCGGATGGACGGGCGGGAGAGGAGCGACGCCGACGAGGTCGCCGACGAGATGGCGGAGGCGAGGGAGATCGGCATCAGACAGAGCCCCTTCCCCTGCAGGTACTGCATCGCCGTGCCCATGTCCTCCTCCATCATCTTCGCCACCTGCTGCTCCGTCACCCGCATCCCACCACCGGTGCCACCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCCTCGCCGCCGGTGCCGCCCTTGCTCGCCTTGCCACCGCTGCCATTGCTGCTCCCGTTGCTGTTCCCCTGCACGGACGCACGACGTCGCATATCTCAGAGCCGGAAACTACACGCAACGGCGGCAAAGGCTCGCCGTGTCGATGAACATTGGTTGCTTGCTTGCTTACCTCCGACGACATGCTCGCCACCAGCGGCGCCATGCCGGCGGCGCCGCCGAGCCGGCTCATGCTGAGAACCTGCGGTGTCAAAGGCAGTCACGATGGCATGTCTGATCGATCCTAGCTCACTGAGCTCAAACACACAGAATCGATTGATGATCACCTTGACTTGGAGCTGCAGGAACTTGACGTAGTCGATGATCTCGTCCAGCATCGACGCCTTGTCCGTCTGCAAGCAAAATCAAATCAAAGAACTCCATTCAATCACTTCATTTTCTTCATCAAGATGTCAAGAAAAACGATGACAAAATTGGGCACGAATGCGCCCATGTGCTCATTCACTGCGCTCCATTTCTATCAGTTGGACTGTTCTTTATTTCAGAAAAAGGAAACAAAGAAAATTCTTCTTGACAATGCAATGACCATATATATGATTAATTCTACCAGAATGTAATATTTCAGAAGGGATGAGAGTTTTGGGATGTAACCTTGTTGGCGTTTGGGACTAGCTCCTGCAGCGATTTCATCCGCTCCGCTATCCTCTCCCTCCGAAGCTGAAAATAACATGAACAATACACAAAAAAGTTGAGAAGAAAAATGGAAATGTTGCTCAAGTTCCATTTATTTTTTGGTTGAAACTTGAAAGAGGCAGTAATAATTGTAAGATGATTTCGTGAACAGTGACAGGTTTGACGTAGCTGATTTGATCTGTCAGATTTAAGCACGAGCCAGATCAAGCATTTTCTGCTGTCGTGAGTAAACATGTCTAGAATTCTACTAGTACTAATTTTAAATTTTTAATTAAGTTCTAGAAATATAGAATGCCAGAGAGGAGATTGAGTTGGTAGTGGGAAGAGAGTGGCAGGCAAGCATGCATACACGTTCGGCGATGCTGTGTGGGTCGGTGGCTTGCCCTCTCCTCGCGCGCACCCGCTGCTGCCGCGGCGGCGCCGTGCCACCGCCACCGGAGGAGGTGACCGGCGCCGTGCCTCCGCTCGCCGCCGGCCCTCCGAAGCTCTGCCCCGACATTGATCCTCCCTTGAAACGACGAAGAGGACAATCTTGATGTTTGAGTCGTAGAGATTAATTACAGTGGCAAGTTCTTGAGCGATCGGCTTGCTTACCTGGCCGAACGGCGGCTGCCCGGCGCCGCCGCTGCCGCCGTGCACGCCGAACCCGTTGAACAGCGCGTGCTCGCCTCCCTGCACATGAAAGAGAAATCTCGTCGGAGAAGGAGGAGAAGATGGTGGTAAGGAAGGAGACGAGCGTTTCCAAGAACGTGGGAGCACGCACGGCGGCGGCATTGGGCGACTTGAAGCCGCCCTCCATCTCCTCCCGCGGCGGCACGTTCGTCCGGTCCGTGAACAGCGGCAGCGGCGAGAACGCGCCGCTCCCGTCCTCCTCGCCGCCGCCGGCCTGCCGGTGCAGCTCGCTCAGCTGCAGCATCACCGGCTTCTCTCCCCCGCCGCCGCCAGCCCCACCGATCTGGTGATGCCGGAGGCGGGACGCGAGCAGCGCCGACTCGTCGAACACCTGCGACGCCGCCGCCGCCGCTGCCGGATCGACCTCCCACGGCGACTTCCCCGCCGCGCCGCCGCCGCCGCCCCCCAGGTCGGCCCACGCCGACGGCAGCGTGGAGAGCATCTGGTCGAAGAAGTCATCCTGCGTCCCCTCGCCGCCGCCGCCGGCGACCGTGTCGCGGCTGCTCGGCTGCATGGAGGCAAAGCTTAGCTTAGCTTAGCTGAAGCTCAAGCTGACAAGCTGCTTGCTAATTAGGCAGCAG
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| CDS seq | ATGCAGCCGAGCAGCCGCGACACGGTCGCCGGCGGCGGCGGCGAGGGGACGCAGGATGACTTCTTCGACCAGATGCTCTCCACGCTGCCGTCGGCGTGGGCCGACCTGGGGGGCGGCGGCGGCGGCGCGGCGGGGAAGTCGCCGTGGGAGGTCGATCCGGCAGCGGCGGCGGCGGCGTCGCAGGTGTTCGACGAGTCGGCGCTGCTCGCGTCCCGCCTCCGGCATCACCAGATCGGTGGGGCTGGCGGCGGCGGGGGAGAGAAGCCGGTGATGCTGCAGCTGAGCGAGCTGCACCGGCAGGCCGGCGGCGGCGAGGAGGACGGGAGCGGCGCGTTCTCGCCGCTGCCGCTGTTCACGGACCGGACGAACGTGCCGCCGCGGGAGGAGATGGAGGGCGGCTTCAAGTCGCCCAATGCCGCCGCCGGAGGCGAGCACGCGCTGTTCAACGGGTTCGGCGTGCACGGCGGCAGCGGCGGCGCCGGGCAGCCGCCGTTCGGCCAGGGAGGATCAATGTCGGGGCAGAGCTTCGGAGGGCCGGCGGCGAGCGGAGGCACGGCGCCGGTCACCTCCTCCGGTGGCGGTGGCACGGCGCCGCCGCGGCAGCAGCGGGTGCGCGCGAGGAGAGGGCAAGCCACCGACCCACACAGCATCGCCGAACGTCTTCGGAGGGAGAGGATAGCGGAGCGGATGAAATCGCTGCAGGAGCTAGTCCCAAACGCCAACAAGACGGACAAGGCGTCGATGCTGGACGAGATCATCGACTACGTCAAGTTCCTGCAGCTCCAAGTCAAGGTTCTCAGCATGAGCCGGCTCGGCGGCGCCGCCGGCATGGCGCCGCTGGTGGCGAGCATGTCGTCGGAGGGGAACAGCAACGGGAGCAGCAATGGCAGCGGTGGCAAGGCGAGCAAGGGCGGCACCGGCGGCGAGGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGTGGCACCGGTGGTGGGATGCGGGTGACGGAGCAGCAGGTGGCGAAGATGATGGAGGAGGACATGGGCACGGCGATGCAGTACCTGCAGGGGAAGGGGCTCTGTCTGATGCCGATCTCCCTCGCCTCCGCCATCTCGTCGGCGACCTCGTCGGCGTCGCTCCTCTCCCGCCCGTCCATCCGCCACGCCGGCGCGCCGCCGCAGACGATGCTCGATGCCGCCGGCCCGACCTCGCCGGCGGCGATGTCTAACGGCGATGACCCACGGCACGCAAAGGCGGACGGCGGCGCCGGCGGGACGCAATGA
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| Protein seq | MQPSSRDTVAGGGGEGTQDDFFDQMLSTLPSAWADLGGGGGGAAGKSPWEVDPAAAAAASQVFDESALLASRLRHHQIGGAGGGGGEKPVMLQLSELHRQAGGGEEDGSGAFSPLPLFTDRTNVPPREEMEGGFKSPNAAAGGEHALFNGFGVHGGSGGAGQPPFGQGGSMSGQSFGGPAASGGTAPVTSSGGGGTAPPRQQRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAGMAPLVASMSSEGNSNGSSNGSGGKASKGGTGGEGGGGGGGGGGGGTGGGMRVTEQQVAKMMEEDMGTAMQYLQGKGLCLMPISLASAISSATSSASLLSRPSIRHAGAPPQTMLDAAGPTSPAAMSNGDDPRHAKADGGAGGTQ |
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| Function | bHLH transcription factor RHL1 [UniProtKB/Swiss-Prot:D0PX88] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_06G0071700 | OsMH63_06T0071700.1 | Chr06 | 4002979 | 4005466 | - | maker | ||
| CDS seq | ATGCAGCCGAGCAGCCGCGACACGGTCGCCGGCGGCGGCGGCGAGGGGACGCAGGATGACTTCTTCGACCAGATGCTCTCCACGCTGCCGTCGGCGTGGGCCGACCTGGGGGGCGGCGGCGGCGGCGCGGCGGGGAAGTCGCCGTGGGAGGTCGATCCGGCAGCGGCGGCGGCGGCGTCGCAGGTGTTCGACGAGTCGGCGCTGCTCGCGTCCCGCCTCCGGCATCACCAGATCGGTGGGGCTGGCGGCGGCGGGGGAGAGAAGCCGGTGATGCTGCAGCTGAGCGAGCTGCACCGGCAGGCCGGCGGCGGCGAGGAGGACGGGAGCGGCGCGTTCTCGCCGCTGCCGCTGTTCACGGACCGGACGAACGTGCCGCCGCGGGAGGAGATGGAGGGCGGCTTCAAGTCGCCCAATGCCGCCGCCGGAGGCGAGCACGCGCTGTTCAACGGGTTCGGCGTGCACGGCGGCAGCGGCGGCGCCGGGCAGCCGCCGTTCGGCCAGGGAGGATCAATGTCGGGGCAGAGCTTCGGAGGGCCGGCGGCGAGCGGAGGCACGGCGCCGGTCACCTCCTCCGGTGGCGGTGGCACGGCGCCGCCGCGGCAGCAGCGGGTGCGCGCGAGGAGAGGGCAAGCCACCGACCCACACAGCATCGCCGAACGTCTTCGGAGGGAGAGGATAGCGGAGCGGATGAAATCGCTGCAGGAGCTAGTCCCAAACGCCAACAAGACGGACAAGGCGTCGATGCTGGACGAGATCATCGACTACGTCAAGTTCCTGCAGCTCCAAGTCAAGGTTCTCAGCATGAGCCGGCTCGGCGGCGCCGCCGGCATGGCGCCGCTGGTGGCGAGCATGTCGTCGGAGGGGAACAGCAACGGGAGCAGCAATGGCAGCGGTGGCAAGGCGAGCAAGGGCGGCACCGGCGGCGAGGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGTGGCACCGGTGGTGGGATGCGGGTGACGGAGCAGCAGGTGGCGAAGATGATGGAGGAGGACATGGGCACGGCGATGCAGTACCTGCAGGGGAAGGGGCTCTGTCTGATGCCGATCTCCCTCGCCTCCGCCATCTCGTCGGCGACCTCGTCGGCGTCGCTCCTCTCCCGCCCGTCCATCCGCCACGCCGGCGCGCCGCCGCAGACGATGCTCGATGCCGCCGGCCCGACCTCGCCGGCGGCGATGTCTAACGGCGATGACCCACGGCACGCAAAGGCGGACGGCGGCGCCGGCGGGACGCAATGA
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| Protein seq | MQPSSRDTVAGGGGEGTQDDFFDQMLSTLPSAWADLGGGGGGAAGKSPWEVDPAAAAAASQVFDESALLASRLRHHQIGGAGGGGGEKPVMLQLSELHRQAGGGEEDGSGAFSPLPLFTDRTNVPPREEMEGGFKSPNAAAGGEHALFNGFGVHGGSGGAGQPPFGQGGSMSGQSFGGPAASGGTAPVTSSGGGGTAPPRQQRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAGMAPLVASMSSEGNSNGSSNGSGGKASKGGTGGEGGGGGGGGGGGGTGGGMRVTEQQVAKMMEEDMGTAMQYLQGKGLCLMPISLASAISSATSSASLLSRPSIRHAGAPPQTMLDAAGPTSPAAMSNGDDPRHAKADGGAGGTQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0.0920795 | 0.0081035 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0184000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g08500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0184000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0005910 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0005750 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0005720 | RBH | 0.0 | 4.748857 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0005920 | RBH | 0.0 | 0.034249 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0005790 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0554300 | RBH | 1.724069 | 10.1479655 | 2.991228 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0005660 | RBH | 0.0 | 0.345084 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0070900 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0005980 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0005830 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0005830 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0005880 | RBH | 0.0 | 1.095918 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0005710 | RBH | 0.0 | 3.773634 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G005590 | RBH | 0.0 | 1.408435 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0005830 | RBH | 0.0 | 0.0 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | R9311C06g22062 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_06g0064600 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_06g0062900 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_06g0061900 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_06g0063200 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0609772800.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0621213000.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_018571 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0618381600.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0620332200.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0612128800.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0613911600.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0616180200.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0613320200.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0610807800.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0609713800.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0613039000.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0620160800.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0612278000.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0614073400.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0611783800.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0609771000.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0609793400.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0613841400.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0611734400.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0612156400.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0626159600.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0615878000.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0611480600.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0609793800.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0613117200.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0613469200.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0616771800.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0611918600.01 | RBH | None | None | None |
