Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_05G0404200 | OGI:05070600 | 37/50 | Minghui 63 | MH63RS3 | HZAU | Chr05:27224026-27225511 | ||||||||
| Gene Symbol | C3H37,OsC3H37,OsTZF7,OsCCCH-Zn-1 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | TCTCCGAGCACCAATCGTGTATTCCGTCGAATCGAATTCGATCAAGACATGCAGTAAAGCAGCTGATGACTCGAAACCTGGTGATTAACCACAGGAAGATAGATAAAAAAGCATCGAATTTAGCATAATTAAGTACATCAAATGTGATAATATCACGAAACAGGTAGAGGCTATTAGCATATTACACTCCATATCTACACTGGTAGATAATAATAATAATAATCGAAAAGCAAGGGTGCTACTAGCTCCCCAAGATTTTCGAAAAAAAAAGGCAGGCAAACGCACGCCACACTTACAGTTACGGATTGCTGTGTTCAGATTAACTTGCACCATATTTGTTTATGTACAGAAGAATGATGCAATTTGCGAAATGATCATCGAATTGAAGTGAACTTAATTAATGAAGCTGTTCTGCGAGGCGCCTCTGCATCTTAATCGTCGCCGCCGAGAGAGATGATGTCTTTGAGCTTGTCGGGTGCTTCTACATCACAAGCTCGGACACCCACCCGAAATCCGGCCCGTCCTCGTCCGTCACCGGCGGTAGCACCGGCGTTACGGACGATGCCGACGGCCTCACCTTCCGGAGGCCGAGCTCCCGCATTGCGAACATCAACTCTTCCATCTCCGCGTCCGCGTCGCATTCATCGATGCCGTCCACCCACCTCCGCCCCTCCACCGGCGACACCGGCGGCGACTCCCAGAGGGAGGCCAGGGTCGACTTGGGGGAGAGCGACAGCGGCGAGTCTTCCTTGGACCCGGCGCGGAGCTCGCCGGCGGTGTGCGCGAAGAAGCAGACGCGGCGGCGGCACGCGACGCCCGCGCGGCACGGCCGCGTGCGGTAGCGCGACGGGTGGAGCCAGAGCTCGAACGTGCCGTGCGCGAACGGGCACGTGCTGCCCCTCGGGCACGCGGCGCCCGGCCGGCGGCGGAAGTCCGGGCACGGCTCGCCCGTGTACGCCACGCGCCTCGGGTCACGCCGCCTCGCGGCCTCGCCAGGGTGCGCGTACGGGCACGCCGTCCAGTCGTGGCTCCGCGCCCGCGCGCACCGCCGCACCTTGAACTCGTACATCATGAACTCATCATCAGCCTCCGCCTCGGCGTCGGCCTCGGCCTCCCCGTCGCTACGCCTGGCGGACAGGTACTCACCCAGCGCGGCGAGGAGCTCGGGCGGGATCTCCACCGCAGCGGGGTCAGCCCAAGAGACGGCCAGCGCCGCCGGGTCGAGCAGGAGGTGCTCTCGGCTCGCCATGGTGCTCACTACTCACTCACACTACCTTGTCCACTCCCAACACCACCGAAGAAAAAAAAAAAGAGGAAACTGTACTTTGAGGTGACACCCGGTGTGGTGGGTGGCGAGTGGCCTTTATAGCAAGCGCGGCTTGGCGAGAAGCGCCGTTGGGTTTCGGCGGGGAGAGGAGGAAGGCAAGGCGGTATTGCGTAGCATCCCTTTGTTGGTTGCCGAGCTATCGGGTTAGCGTGGGTGGTT
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| CDS seq | ATGGCGAGCCGAGAGCACCTCCTGCTCGACCCGGCGGCGCTGGCCGTCTCTTGGGCTGACCCCGCTGCGGTGGAGATCCCGCCCGAGCTCCTCGCCGCGCTGGGTGAGTACCTGTCCGCCAGGCGTAGCGACGGGGAGGCCGAGGCCGACGCCGAGGCGGAGGCTGATGATGAGTTCATGATGTACGAGTTCAAGGTGCGGCGGTGCGCGCGGGCGCGGAGCCACGACTGGACGGCGTGCCCGTACGCGCACCCTGGCGAGGCCGCGAGGCGGCGTGACCCGAGGCGCGTGGCGTACACGGGCGAGCCGTGCCCGGACTTCCGCCGCCGGCCGGGCGCCGCGTGCCCGAGGGGCAGCACGTGCCCGTTCGCGCACGGCACGTTCGAGCTCTGGCTCCACCCGTCGCGCTACCGCACGCGGCCGTGCCGCGCGGGCGTCGCGTGCCGCCGCCGCGTCTGCTTCTTCGCGCACACCGCCGGCGAGCTCCGCGCCGGGTCCAAGGAAGACTCGCCGCTGTCGCTCTCCCCCAAGTCGACCCTGGCCTCCCTCTGGGAGTCGCCGCCGGTGTCGCCGGTGGAGGGGCGGAGGTGGGTGGACGGCATCGATGAATGCGACGCGGACGCGGAGATGGAAGAGTTGATGTTCGCAATGCGGGAGCTCGGCCTCCGGAAGGTGAGGCCGTCGGCATCGTCCGTAACGCCGGTGCTACCGCCGGTGACGGACGAGGACGGGCCGGATTTCGGGTGGGTGTCCGAGCTTGTGATGTAG
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| Protein seq | MASREHLLLDPAALAVSWADPAAVEIPPELLAALGEYLSARRSDGEAEADAEAEADDEFMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRGSTCPFAHGTFELWLHPSRYRTRPCRAGVACRRRVCFFAHTAGELRAGSKEDSPLSLSPKSTLASLWESPPVSPVEGRRWVDGIDECDADAEMEELMFAMRELGLRKVRPSASSVTPVLPPVTDEDGPDFGWVSELVM |
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| Function | Zinc finger CCCH domain-containing protein 37 [UniProtKB/Swiss-Prot:Q65X92] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_05G0404200 | OsMH63_05T0404200.1 | Chr05 | 27224026 | 27225511 | - | maker | ||
| CDS seq | ATGGCGAGCCGAGAGCACCTCCTGCTCGACCCGGCGGCGCTGGCCGTCTCTTGGGCTGACCCCGCTGCGGTGGAGATCCCGCCCGAGCTCCTCGCCGCGCTGGGTGAGTACCTGTCCGCCAGGCGTAGCGACGGGGAGGCCGAGGCCGACGCCGAGGCGGAGGCTGATGATGAGTTCATGATGTACGAGTTCAAGGTGCGGCGGTGCGCGCGGGCGCGGAGCCACGACTGGACGGCGTGCCCGTACGCGCACCCTGGCGAGGCCGCGAGGCGGCGTGACCCGAGGCGCGTGGCGTACACGGGCGAGCCGTGCCCGGACTTCCGCCGCCGGCCGGGCGCCGCGTGCCCGAGGGGCAGCACGTGCCCGTTCGCGCACGGCACGTTCGAGCTCTGGCTCCACCCGTCGCGCTACCGCACGCGGCCGTGCCGCGCGGGCGTCGCGTGCCGCCGCCGCGTCTGCTTCTTCGCGCACACCGCCGGCGAGCTCCGCGCCGGGTCCAAGGAAGACTCGCCGCTGTCGCTCTCCCCCAAGTCGACCCTGGCCTCCCTCTGGGAGTCGCCGCCGGTGTCGCCGGTGGAGGGGCGGAGGTGGGTGGACGGCATCGATGAATGCGACGCGGACGCGGAGATGGAAGAGTTGATGTTCGCAATGCGGGAGCTCGGCCTCCGGAAGGTGAGGCCGTCGGCATCGTCCGTAACGCCGGTGCTACCGCCGGTGACGGACGAGGACGGGCCGGATTTCGGGTGGGTGTCCGAGCTTGTGATGTAG
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| Protein seq | MASREHLLLDPAALAVSWADPAAVEIPPELLAALGEYLSARRSDGEAEADAEAEADDEFMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRGSTCPFAHGTFELWLHPSRYRTRPCRAGVACRRRVCFFAHTAGELRAGSKEDSPLSLSPKSTLASLWESPPVSPVEGRRWVDGIDECDADAEMEELMFAMRELGLRKVRPSASSVTPVLPPVTDEDGPDFGWVSELVM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 7.0519325 | 17.263965 | 179.868805 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0525900 | RBH | 0.0 | 0.602347 | 2.281693 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g45020 | RBH | 0.0 | 0.401586 | 0.582216 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0525900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0511800 | RBH | 0.0554485 | 0.0113735 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0416400 | RBH | 8.247407 | 26.1955555 | 18.7059125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | R9311C05g20787 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_05g0284900 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_05g0285500 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_05g0273000 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_05g0290300 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0509309800.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0520526000.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_023861 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0517680400.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0519626400.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0511447000.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0513103800.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0515374000.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0512634400.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0510319400.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0509251000.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0512446400.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0519397200.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0511654200.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0513254000.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0511501400.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0509322200.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0509330400.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0513036400.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0511216000.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0511512200.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0525326800.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0515200800.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0510760600.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0509270400.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0512403600.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0512719400.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0516049200.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0511104200.01 | RBH | None | None | None |
