Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_05G0365900 | OGI:05064230 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr05:24719320-24723337 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | Basmati1_MH63RS3_INS0530710,127652_MH63RS3_INS0537430,R9311_MH63RS3_INS0510680,G8_MH63RS3_INS0518920,117534_MH63RS3_INS0535120,G46_MH63RS3_INS0512120,FS32_MH63RS3_INS0509840,YX1_MH63RS3_INS0511870,D62_MH63RS3_INS0514350,OglaRS2_MH63RS3_INS0536010,
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| DNA seq | TTATCTAAACCTACCTATGATGGTGAACACTCTGTCCGTAGCTGCAACAAAAAGGGTGGTTATGGTCTTGTGGAACACCCATAATCTACCAAATGGAAAGGCCAACAAAAAAGATCAATAAGGATGACCTGACAGGAGAGCAAATTGATAATACGCAGCATACTTGTACAGAGTACCAATATTTAAAGTCTGATAGAACTAATTACTACCGGCGTCCACGGAGTTTTCTCCTCTTAGTTCCTTTTAAAGGTTCAGCATTAGGTGAGTCATCCTGCTCAGCTGCATCCTCTGTACTGGTGTCCTTGTCCCCAATAGCTTCCTCATCAGCAGGCTCAGACTCATTTGCATCCTCATCAACAGCTTTTATGATGTAGATCTGTAAAAGATGATGAATTACATGTCAAGGACAAGTATGTTTCAAACAAAACAAAATGCAACTGAACATACACCAGAATAAAGAGGAGAATGCTTTCCCCCGGGCACTCGACGGGCCAGGGAAATATCGGTCGCTCCAAATGGTGGACCAGGGTTGTGTTGACCACAAGATTTTTTCTCAAGATGAGCAATTACCTTTTTCTCTCTTCTCTTGCTCTATCCCAGTTCCATGCATGCATGCATAAACGCATGCGGGCTAACAAAATGCATGTTGTTTTGCTAACAAAATGCGTGCATGCATTAAATCTATTAGCATGTTCTAAATATTTTCTCTAAAATTATTTATTCGATCAACGATCCGATTACTGCTATATTTGGTGCAATTAAATCTTTACAACAAGATGTCATATGATTATATTACAATTAAAAAAGAAGGTTTAGACCATTGTTTTTTTATGTTTCACGTGTCAGATGCCAACGTTTCAATTGGAATTTAAATTTGTTCCACATTTTAAGTTTTTTGTGTTGGAAAGAGTTGTTCTTTATGTTGCGTACGATGCTATTTGGGTGTTTCAATAAGTATTTTCTAGTATTTCACTAGTTCATTTGCAAATGTTGCACTTCAGTGTGGTGTTTTTGGGTGTTCCAGTAAGTAGTTTGGGATGTTTCAAAAATTACAAATCAATGTTTCATGCGTGATATAAAAAATGTTTCAATTAGAAATATTATAATATATTTTTTGTCATAAAAATATAATCATGTGAGATCTCATTATAAATATTTAATTATAACAAATATAACGGTGCAAATAGATTATGAATCAGATAAGTAATGTAAAAGAAAAGGTGATTTAAAGATCCACTAAATAAATCAATTTTAGATGGAGGTAAAGGGTTTGGCTACTCAGTTTTAGATGGAGGTAAAGGGTTTGGCTGCTACAACATGTATTAATGCAGCATGTATGTTCTATGATACGCTTTAATTAATTGGCATGATACATGCAACCTTTGCTGGGAGCCAACCAGCCAGAGGCATGGGGTGTCCGATTTTTTTGGGTAAAAATCGCACGCCCGACGCGTAGTGGCTCTAGAATAAAAAATTCCCTATTACTCTTAAGTTTCAGAATAAAAAATGACAGAATTATTGTCATGGACATTGGGCTAGAGGCCCGTGGGGCCAGCTTCTGGCAAGTGGATAGTTCAATGGGTACTGTAGCAGCAGGTTAGGAGTAGATAATATTAGATTGGGTTAGTTAATTAAGGGTAAGTCTCACCAGCTACATAACTGTTCCGGTAAGCAATGTTCTTCTTTCTAACCTAAGTCCTCATCCCCTCATCGCAGTGATTATCCTGTCATGGCCTCAGGTCATGACATTTATCAACATGATATCCACACTAGTTTATAAACATCAAGGCTGGCATTTACTGACAGACTACAGATAAGGGCAATGGGGCATCTTATCCTGTCATGGCCTCAGGTCATGACATTTATCAACATGATATCCACACTAGTTTATAAACATCAAGGCTGGCATTTACTGACAGACTACAGATAAGGGCAATGGGGCATCTATCTTACTTGTCATGTTTGTGTTGATGCATTAGCACTCTTGTGTTAAATGATCCCTTCTAGGATACCTTTGCAAGAAACTATCAAGGATCAAAAATCGGCTAAACAGAAAACATCAAAATACTGAACGTGGAAATTGAATTTGGCCAATTACTGCCTAGTTTGTCTGGTTTTCAGCCAGTTACCACCCAGAATCGCTGCCTTTGTCTGGTTCTCAGTATAACACTGATTTTGTTTGAATCCACTTGTCTTTCTAACACCAAATACTAACACATATCAATGGGTACTAATCAAATCAATTATCAATACAAACTAGCCAAAAAGAAATCAATAATATGGTTAGTGTTTGCATGCTTAAATTTTTCATGCTAGGAAATTTGTGAGGTCCAAATTACCATGAAACATGTCATTGAATCCAATATAAAGTATAGTACCTTAAATCTGTCTGGTTCAGCCAATTCAAAGACCAATGAATCACCATCTTCCAAGTTGTGGTGCATCGCAAAACCTCTCCATCCACCACTTAGGCCTGTACGGTTCCCAATGTAGACAGAATCAAATTCACCACCCTCTTCATCCTCCAAGACCATCTTATACTCTTTGGGAGGCAGATGCAATTTGCAGAATCTAGTTGGAAGACCCTTGTAGGATGGAAAAGAAACATAGCTATGAGTACTCATTGATCATAATATTTTTAACAAAATTAGTTAATGAATTCCATACAACGAAACCTTACAAGCCAAAAGCAGCTGGACACATGTGATCGAACCATGGTCTTAACAAACGACGGGTTCTCAGGGTCTAGACTATTTTGAAGTCTCTCAGCTTTTTTGAAAGCACGTTGTTGCTGTTCATAAGAGGCAACTCTTCCGGTGTAATCCCTCCCCTGCTCTGTGCTCCTAATCCTACTGCCCCTGTTCAACACAAGCAAGTAGCCAATTATATTGCCTGGCCACAGCCACAACTATCACAAATCTGTAAACCATATGGAAGTATTACCTTCTACGGCATAGAAAACTGTTGAGTTCATCAAACTGGCACAATAAAAAGAGCACAACTTAGTACCAACATTTGCATGAAAATAATCTTTCATCACTTCACGAACAAAACAAAGCTTCCTTGCGCTTTAACTCTAAGTAATTATTCCCTCCATTTCATATTATAAGTCGTTTTGACTTTTTTTCCTAGTCAAACTTCTTTAAGTTTGACCAAATTTATAGGAAAAATTTAGCAATATTTTGTACATAAAATGAACATATTAACAAAATATATGGAATGTTAGTTTAAATGAAACTAGGATCATGTCATTAAGGATTCATTTGGGATTGTAACCCATATAAAAAACTGGACTCACAAACTTGTTCTAGAACATGACTACAGTATCTGAATAGACATCGCAAAATTTCTTCCTAAATCCCCAACAAAAGCAACACTACCAATCAAATAGCACTAGCTTTGAAGTGGACCAACTCACATTCTCTTTGTACGAAACCGAGTTGCGCGCCCTCGATGAACGCCTCACTTCAGTGGCCCCAACCTCAAACTTCTTCCGCGGCTTGGGGCTGGCACGAGTGCTCTGCAAGAAGACCCAGAGTAAATCAATCCACGATACCAGCAACCCAAATCCCCCGCGTGTAGCATAGGTTGCCGTAATCACCTTCTGCAATCTCGCCGCCTCCAGCAAGCTCTTGGACATCTTCTTTATGCCCAGATCCTGCGCAGAATCAAGCACCGAAATTTCAACCAAAAAGAAAAAAAGAAAGATAAATTGATGCTGCGACAGTGCATCCAATCCACACGGAATCGGCAAAGGGGAATGCGTGGAATCCCGCACGAACATCCATCCTCTAAACGAATCAGGTTCTACCGGTGGAAAAAAAGCACCTCAAATCTATCCACGATCCACAACGAGGAACGGAGAAAGAGATGAGAGCCAAAAAAAAAAAAATCTGAAACGCTTGTGTGCACGGGCGGGCGGGCTCACCTCGAGGTGCTTGAGGTTCTCGAGGACCCGCTTCCGGCGCTCCTCCTCGTAGGCGGCGCCGGCGGCCGCGCTGCCGGCCTCCGCCGCCAT
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| CDS seq | ATGGCGGCGGAGGCCGGCAGCGCGGCCGCCGGCGCCGCCTACGAGGAGGAGCGCCGGAAGCGGGTCCTCGAGAACCTCAAGCACCTCGAGGATCTGGGCATAAAGAAGATGTCCAAGAGCTTGCTGGAGGCGGCGAGATTGCAGAAGAGCACTCGTGCCAGCCCCAAGCCGCGGAAGAAGTTTGAGGTTGGGGCCACTGAAGTGAGGCGTTCATCGAGGGCGCGCAACTCGGTTTCGTACAAAGAGAATTTTGATGAACTCAACAGTTTTCTATGCCGTAGAAGGGGCAGTAGGATTAGGAGCACAGAGCAGGGGAGGGATTACACCGGAAGAGTTGCCTCTTATGAACAGCAACAACGTGCTTTCAAAAAAGCTGAGAGACTTCAAAATAGTCTAGACCCTGAGAACCCGTCGTTTGTTAAGACCATGGTTCGATCACATGTGTCCAGCTGCTTTTGGCTTGGTCTTCCAACTAGATTCTGCAAATTGCATCTGCCTCCCAAAGAGTATAAGATGGTCTTGGAGGATGAAGAGGGTGGTGAATTTGATTCTGTCTACATTGGGAACCGTACAGGCCTAAGTGGTGGATGGAGAGGTTTTGCGATGCACCACAACTTGGAAGATGGTGATTCATTGGTCTTTGAATTGGCTGAACCAGACAGATTTAAGATCTACATCATAAAAGCTGTTGATGAGGATGCAAATGAGTCTGAGCCTGCTGATGAGGAAGCTATTGGGGACAAGGACACCAGTACAGAGGATGCAGCTGAGCAGGATGACTCACCTAATGCTGAACCTTTAAAAGGAACTAAGAGGAGAAAACTCCGTGGACGCCGATTATGGGTGTTCCACAAGACCATAACCACCCTTTTTGTTGCAGCTACGGACAGAGTGTTCACCATCATAGGTAGGTTTAGATAA
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| Protein seq | MAAEAGSAAAGAAYEEERRKRVLENLKHLEDLGIKKMSKSLLEAARLQKSTRASPKPRKKFEVGATEVRRSSRARNSVSYKENFDELNSFLCRRRGSRIRSTEQGRDYTGRVASYEQQQRAFKKAERLQNSLDPENPSFVKTMVRSHVSSCFWLGLPTRFCKLHLPPKEYKMVLEDEEGGEFDSVYIGNRTGLSGGWRGFAMHHNLEDGDSLVFELAEPDRFKIYIIKAVDEDANESEPADEEAIGDKDTSTEDAAEQDDSPNAEPLKGTKRRKLRGRRLWVFHKTITTLFVAATDRVFTIIGRFR |
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| Function | B3 domain-containing protein Os05g0481400 [UniProtKB/Swiss-Prot:Q5KQI4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_05G0365900 | OsMH63_05T0365900-mRNA-1 | Chr05 | 24719320 | 24723337 | - | maker | ||
| CDS seq | ATGGCGGCGGAGGCCGGCAGCGCGGCCGCCGGCGCCGCCTACGAGGAGGAGCGCCGGAAGCGGGTCCTCGAGAACCTCAAGCACCTCGAGGATCTGGGCATAAAGAAGATGTCCAAGAGCTTGCTGGAGGCGGCGAGATTGCAGAAGAGCACTCGTGCCAGCCCCAAGCCGCGGAAGAAGTTTGAGGTTGGGGCCACTGAAGTGAGGCGTTCATCGAGGGCGCGCAACTCGGTTTCGTACAAAGAGAATTTTGATGAACTCAACAGTTTTCTATGCCGTAGAAGGGGCAGTAGGATTAGGAGCACAGAGCAGGGGAGGGATTACACCGGAAGAGTTGCCTCTTATGAACAGCAACAACGTGCTTTCAAAAAAGCTGAGAGACTTCAAAATAGTCTAGACCCTGAGAACCCGTCGTTTGTTAAGACCATGGTTCGATCACATGTGTCCAGCTGCTTTTGGCTTGGTCTTCCAACTAGATTCTGCAAATTGCATCTGCCTCCCAAAGAGTATAAGATGGTCTTGGAGGATGAAGAGGGTGGTGAATTTGATTCTGTCTACATTGGGAACCGTACAGGCCTAAGTGGTGGATGGAGAGGTTTTGCGATGCACCACAACTTGGAAGATGGTGATTCATTGGTCTTTGAATTGGCTGAACCAGACAGATTTAAGATCTACATCATAAAAGCTGTTGATGAGGATGCAAATGAGTCTGAGCCTGCTGATGAGGAAGCTATTGGGGACAAGGACACCAGTACAGAGGATGCAGCTGAGCAGGATGACTCACCTAATGCTGAACCTTTAAAAGGAACTAAGAGGAGAAAACTCCGTGGACGCCGATTATGGGTGTTCCACAAGACCATAACCACCCTTTTTGTTGCAGCTACGGACAGAGTGTTCACCATCATAGGTAGGTTTAGATAA
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| Protein seq | MAAEAGSAAAGAAYEEERRKRVLENLKHLEDLGIKKMSKSLLEAARLQKSTRASPKPRKKFEVGATEVRRSSRARNSVSYKENFDELNSFLCRRRGSRIRSTEQGRDYTGRVASYEQQQRAFKKAERLQNSLDPENPSFVKTMVRSHVSSCFWLGLPTRFCKLHLPPKEYKMVLEDEEGGEFDSVYIGNRTGLSGGWRGFAMHHNLEDGDSLVFELAEPDRFKIYIIKAVDEDANESEPADEEAIGDKDTSTEDAAEQDDSPNAEPLKGTKRRKLRGRRLWVFHKTITTLFVAATDRVFTIIGRFR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.7780855 | 10.92899 | 12.5526795 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0481400 | RBH | 0.000000 | 0.184235 | 4.684116 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g40280 | RBH | 0.000000 | 0.000000 | 1.146418 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0481400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0021120 | RBH | 0.173731 | 1.732293 | 0.956591 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0021080 | RBH | 0.179445 | 0.000000 | 0.325367 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0020970 | RBH | 0.233711 | 0.000000 | 0.496819 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0020990 | RBH | 0.141469 | 0.120881 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0021070 | RBH | 5.268273 | 1.916263 | 3.063195 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0020660 | RBH | 0.000000 | 0.000000 | 0.249598 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0376200 | RBH | 6.395805 | 13.441996 | 26.8486395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0020900 | RBH | 0.045517 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0020880 | RBH | 0.101222 | 4.874035 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0020950 | RBH | 0.000000 | 7.008041 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0021010 | RBH | 0.131675 | 0.132479 | 0.082066 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0021030 | RBH | 0.195474 | 2.234653 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G020470 | RBH | 0.228172 | 0.000000 | 0.635386 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0020910 | RBH | 0.395381 | 7.757326 | 3.821682 |
| Os XI: R9311 | R9311 | AGIS | R9311C05g20444 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_05g0250600 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_05g0251800 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_05g0241200 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_05g0255800 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0509155600.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0520242200.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_023552 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0517442400.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0519386200.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0511217600.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0512814600.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0515129600.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0512312000.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0510158400.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0509091800.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0512209600.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0519157200.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0511503400.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0512967600.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0511422600.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0509167400.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0509174400.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0512754400.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0511055600.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0511331800.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0525011400.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0514957800.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0510518800.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0509119600.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0512168200.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0512422600.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0515813600.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0510817600.01 | RBH | None | None | None |
