Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0020900 | OGI:05064230 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:24778273-24783047 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cggatgggcttgtgttctccagagtgtgtggatagcttcctccaacttgcaatgaagtgctctcgggatgagactgacgctcggccatccatgacagagattgttagagaacttgagctcatcttgaagataatgccagagggtgatcttatccagctggaaactccacagacatactcaggacgtgctatgagcaaggaccctatgagtaaatctacatcaaattcaacAaatgggaattacttggcctcatctcaaacttttactagtgttgatgcaagtagtagcggcgtgctttctgggatggtgagtcctcggtaatgttatggtagttctaaacatgcagcaatactctgtaatattatggacttcacactttcatttgtcaatgaaccagccagccttgctggaaaatgcaatacatgatagtaacaattgataatgcaagaaaaatgtaaatgttcgtcgatgtcttccctttctggtctgtagatcagttttaagaagccatggacacaggtaaaaagcattgccacataagccaatgctgttctcatccatcatgtaagctgaacacagtgaatcagcacaatacagatggactccaggacacaagtgttcaattgtcaacatttctttacaagttatctaaacctacctatgatggtgaacactctgtccgtagctgcaacaaaaagggtggttatggtcttgtggaacacccataatctaccaaatggaaaggccaacaaaaaagatcaataaggatgacctgacaggagagcaaattgataatacgcagcatacttgtacagagtaccaatatttaaagtctgatagaactaattactaccggcgtccacggagttttctcctcttagttccttttaaaggttcagcattaggtgagtcatcctgctcagctgcatcctctgtactggtgtccttgtccccaatagcttcctcatcagcaggctcagactcatttgcatcctcatcaacagcttttatgatgtagatctgtaaaagatgatgaattacatgtcaaggacaagtatgtttcaaacaaaacaaaatgcaactgaacatacaccaGaataaagaggagaatgctttcccccgggcactcgacgggccagggaaatatcggtcgctccaaatggtggaccagggttgtgttgaccacaagattttttctcaagatgagcaattacctttttctctcttctcttgctctatcccagttccatgcatgcatgcataaacgcatgcgggctaacaaaatgcatgttgttttgctaacaaaatgcgtgcatgcattaaatctattagcatgttctaaataTtttctctaaaattatttattcgatcaacgatccgattactgctatatttggtgcaattaaatctttacaacaagatgtcatatgattatattacaattaaaaaagaaggtttagaccattgtttttttatgtttcacgtgtcagatgccaacgtttcaattggaatttaaatttgttccacattttAagttttttgtgttggaaagagttgttctttatgttgcgtacgatgctatttgggtgtttcaataagtattttctagtatttcactagttcatttgcaaatgttgcacttcagtgtggtgtttttgggtgttccagtaagtagtttgggatgtttcaaaaattacaaatcaatgtttcatgcgtgatatAaaaaatgtttcaattagaaatattataatatattttttgtcataaaaatataatcatgtgagatctcattataaatatttaattataacaaatataacggtgcaaatagattatgaatcagataagtaatgtaaaagaaaaggtgatttaaagatccactAaataaatcaattttagatggaggtaaagggtttggctactcagttttagatggaggtaaagggtttggctgctacaacatgtattaatgcagcatgtatgttctatgatacgctttaattaattggcatgatacatgcaacctttgctgggagccaaccagccagaggcatggggtgtccgaTttttttgggtaaaaatcgcacgcccgacgcgtagtggctctagaataaaaaattccctattactcttaagtttcagaatAaaaaatgacagaattattgtcatggacattgggctagaggcccgtggggccagcttctggcaagtggatagttcaatgggtactgtagcagcaggttaggagtagataatattagattgggttagttaattaagggtaagtctcaccagctacataactgttccggtaagcaatgttcttctttctaacctaagtcctcatcccctcatcgcagtgattatcctgtcatggcctcaggtcatgacatttatcaacatgatatccacactagtttataaacatcaaggctggcatttactgacagactacagataagggcaatggggcatcttatcctgtcatggcctcaggtcatgacatttatcaacatgatatccacactagtttataaacatcaaggctggcatttactgacagactacagataagggcaatggggcatctatcttacttgtcatgTttgtgttgatgcattagcactcttgtgttaaatgatcccttctaggatacctttgcaagaaactatcaaggatcaaaaatcggctaaacagaaaacatcaaaatactgaacgtggaaattgaatttggccaattactgcctagtttgtctggttttcagccagttaccacccagaatcgctgcctttgtctggttctcagtataacactgattttgtttgaatccacttgtctttctaacaccaaatactaacacatatcaatgggtactaatcaaatcaattatcaatacaaactagccaaaaagaaatcaataatatggttagtGtttgcatgcttaaatttttcatgctaggaaatttgtgaggtccaaattaccatgaaacatgtcattgaatccaatataaagtatagtaccttaaatctgtctggttcagccaattcaaagaccaatgaatcaccatcttccaagttgtggtgcatcgcaaaacctctccatccaccacttaggcctgtacggttcccaatgtagacagaatcaaattcaccaccctcttcatcctccaagaccatcttatactctttgggaggcagatgcaatttgcagaatctagttggaagaCccttgtaggatggaaaagaaacatagctatgagtactcattgatcataatatttttaacaaaattagttaatgaattccatacaacgaaaccttacaagccaaaagcagctggacacatgtgatcgaaccatggtcttaacaaacgacgggttctcagggtctagactattttgaagtctctcagcttttttgaaagcacgttgttgctgttcataagaggcaactcttccggtgtaatccctcccctgctctgtgctcctaatcctactgcccctgttcaacacaagcaagtagccaattatattgcctggccacagccacaactatcacaaatctgtaaaccatatggaagtattaccttctacggcatagaaaactgttgagttcatcaaactggcacaataaaaagagcacaacttagtACCAacatttgcatgaaaataatctttcatcacttcacGaacaaaacaaagcttccttgcgctttaactctaagtaattattccctccatttcatattataagtcgttttgactttttttcctagtcaaacttctttaagtttgaccaaaTttataggaaaaatttagcaatattttgtacataaaatgaacatattaacaaaatatatggaatgttagtttaaatgaaactaggatcatgtcattaaggattcatttgggattgtaacccatataaaaaactggactcacaaacttgttctagaacatgactacagtatctgaatagacatcgcaaaatttcttcctaaatccccaacaaaagcaacactaccaatcaaatagcactagctttgaagtggaccaactcacattctctttgtacgaaaccgagttgcgcgccctcgatgaacgcctcacttcagtggccccaacctcaaacttcttccgcggcttggggctggcacgagtgctctgcaagaagacccagagtaaatcaatccacgataccagcaacccaaatcccccgcgtgtagcataggttgccgtaatcaccttctgcaatctcgccgcctccagcaagctcttggacatcttctttatgcccagatcctgcgcagaatcaagcaccgaaatttcaaccaaaaagaaaaAAAGaaagataaattgatgctgcgacagtgcatccaatccacacggaatcggcaaaggggaatgcgtggaatcccgcacgaaCatccatcctctaaacgaatcaggttctaccggtggaaaaaaagcacctcaaatctatccacgatccacaacgaggaacggagaaagagatgagagccaaaaaaaaaaaaatctgaaacgcttgtgtgcacgggcgggcgggctcacctcgaggtgcttgaggttctcgaggacccgcttccggcgctcctcctcgtagGCggcgccggcggccgcgctgccggcctccgccgccatggctcctcctccctccgccgaaacccttcttctcccctgcacgcgactacgcgaggaggaaatgggTCtctctcttctcctctccgagagAAAaaaaaatactaagagaaagg
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| CDS seq | atggcggcggaggccggcagcgcggccgccggcgccGCctacgaggaggagcgccggaagcgggtcctcgagaacctcaagcacctcgaggatctgggcataaagaagatgtccaagagcttgctggaggcggcgagattgcagaagagcactcgtgccagccccaagccgcggaagaagtttgaggttggggccactgaagtgaggcgttcatcgagggcgcgcaactcggtttcgtacaaagagaattttgatgaactcaacagttttctatgccgtagaaggggcagtaggattaggagcacagagcaggggagggattacaccggaagagttgcctcttatgaacagcaacaacgtgctttcaaaaaagctgagagacttcaaaatagtctagaccctgagaacccgtcgtttgttaagaccatggttcgatcacatgtgtccagctgcttttggcttgGtcttccaactagattctgcaaattgcatctgcctcccaaagagtataagatggtcttggaggatgaagagggtggtgaatttgattctgtctacattgggaaccgtacaggcctaagtggtggatggagaggttttgcgatgcaccacaacttggaagatggtgattcattggtctttgaattggctgaaccagacagatttaagatctacatcataaaagctgttgatgaggatgcaaatgagtctgagcctgctgatgaggaagctattggggacaaggacaccagtacagaggatgcagctgagcaggatgactcacctaatgctgaacctttaaaaggaactaagaggagaaaactccgtggacgccggtag
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| Protein seq | MAAEAGSAAAGAAYEEERRKRVLENLKHLEDLGIKKMSKSLLEAARLQKSTRASPKPRKKFEVGATEVRRSSRARNSVSYKENFDELNSFLCRRRGSRIRSTEQGRDYTGRVASYEQQQRAFKKAERLQNSLDPENPSFVKTMVRSHVSSCFWLGLPTRFCKLHLPPKEYKMVLEDEEGGEFDSVYIGNRTGLSGGWRGFAMHHNLEDGDSLVFELAEPDRFKIYIIKAVDEDANESEPADEEAIGDKDTSTEDAAEQDDSPNAEPLKGTKRRKLRGRR |
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| Function | B3 domain-containing protein Os05g0481400 [UniProtKB/Swiss-Prot:Q5KQI4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0020900 | OsLima_05g0020900.01 | Chr05 | 24778273 | 24783047 | - | NAM | ||
| CDS seq | atggcggcggaggccggcagcgcggccgccggcgccGCctacgaggaggagcgccggaagcgggtcctcgagaacctcaagcacctcgaggatctgggcataaagaagatgtccaagagcttgctggaggcggcgagattgcagaagagcactcgtgccagccccaagccgcggaagaagtttgaggttggggccactgaagtgaggcgttcatcgagggcgcgcaactcggtttcgtacaaagagaattttgatgaactcaacagttttctatgccgtagaaggggcagtaggattaggagcacagagcaggggagggattacaccggaagagttgcctcttatgaacagcaacaacgtgctttcaaaaaagctgagagacttcaaaatagtctagaccctgagaacccgtcgtttgttaagaccatggttcgatcacatgtgtccagctgcttttggcttgGtcttccaactagattctgcaaattgcatctgcctcccaaagagtataagatggtcttggaggatgaagagggtggtgaatttgattctgtctacattgggaaccgtacaggcctaagtggtggatggagaggttttgcgatgcaccacaacttggaagatggtgattcattggtctttgaattggctgaaccagacagatttaagatctacatcataaaagctgttgatgaggatgcaaatgagtctgagcctgctgatgaggaagctattggggacaaggacaccagtacagaggatgcagctgagcaggatgactcacctaatgctgaacctttaaaaggaactaagaggagaaaactccgtggacgccggtag
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| Protein seq | MAAEAGSAAAGAAYEEERRKRVLENLKHLEDLGIKKMSKSLLEAARLQKSTRASPKPRKKFEVGATEVRRSSRARNSVSYKENFDELNSFLCRRRGSRIRSTEQGRDYTGRVASYEQQQRAFKKAERLQNSLDPENPSFVKTMVRSHVSSCFWLGLPTRFCKLHLPPKEYKMVLEDEEGGEFDSVYIGNRTGLSGGWRGFAMHHNLEDGDSLVFELAEPDRFKIYIIKAVDEDANESEPADEEAIGDKDTSTEDAAEQDDSPNAEPLKGTKRRKLRGRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.045517 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0481400 | RBH | 0.000000 | 0.184235 | 4.684116 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g40280 | RBH | 0.000000 | 0.000000 | 1.146418 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0481400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0021120 | RBH | 0.173731 | 1.732293 | 0.956591 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0021080 | RBH | 0.179445 | 0.000000 | 0.325367 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0020970 | RBH | 0.233711 | 0.000000 | 0.496819 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0020990 | RBH | 0.141469 | 0.120881 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0021070 | RBH | 5.268273 | 1.916263 | 3.063195 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0365900 | RBH | 4.7780855 | 10.92899 | 12.5526795 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0020660 | RBH | 0.000000 | 0.000000 | 0.249598 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0376200 | RBH | 6.395805 | 13.441996 | 26.8486395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0020880 | RBH | 0.101222 | 4.874035 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0020950 | RBH | 0.000000 | 7.008041 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0021010 | RBH | 0.131675 | 0.132479 | 0.082066 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0021030 | RBH | 0.195474 | 2.234653 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G020470 | RBH | 0.228172 | 0.000000 | 0.635386 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0020910 | RBH | 0.395381 | 7.757326 | 3.821682 |
