Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_05G0025600 | OGI:05004830 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr05:1670479-1670748 | ||||||||
| Gene Symbol | C3H33,OsC3H33,CCCH-Zn-5,TZF5,OsCCCH-Zn-5,OsTZF5 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | ATGTCGCCGGCGACGACCGGCGCGCCGTCCATTCTCTCGGACTGGGGCTCGCCGGACGGCAAGCTGGACTGGGGCGTCCAGGGCGACGAGCTGCACAAGCTCCGCAAGTCGGCGTCGTTCGCGTTCCGCGGCCAATCCGCCATGCCGGTGGCGACGCACGCCGCGGCGGCGGAGCCGGACGTGTCATGGGTGAACTCTCTTGTCAAGGACGGCCACGCCGCCGGCGACATATTCGCGCAGTGGCCGGAGCAGGAGCAGATGGTGGCATGA |
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| CDS seq | ATGTCGCCGGCGACGACCGGCGCGCCGTCCATTCTCTCGGACTGGGGCTCGCCGGACGGCAAGCTGGACTGGGGCGTCCAGGGCGACGAGCTGCACAAGCTCCGCAAGTCGGCGTCGTTCGCGTTCCGCGGCCAATCCGCCATGCCGGTGGCGACGCACGCCGCGGCGGCGGAGCCGGACGTGTCATGGGTGAACTCTCTTGTCAAGGACGGCCACGCCGCCGGCGACATATTCGCGCAGTGGCCGGAGCAGGAGCAGATGGTGGCATGA |
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| Protein seq | MSPATTGAPSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQSAMPVATHAAAAEPDVSWVNSLVKDGHAAGDIFAQWPEQEQMVA |
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| Function | Zinc finger CCCH domain-containing protein 33 [UniProtKB/Swiss-Prot:Q688R3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_05G0025600 | OsMH63_05T0025600.1 | Chr05 | 1670479 | 1670748 | + | maker | ||
| CDS seq | ATGTCGCCGGCGACGACCGGCGCGCCGTCCATTCTCTCGGACTGGGGCTCGCCGGACGGCAAGCTGGACTGGGGCGTCCAGGGCGACGAGCTGCACAAGCTCCGCAAGTCGGCGTCGTTCGCGTTCCGCGGCCAATCCGCCATGCCGGTGGCGACGCACGCCGCGGCGGCGGAGCCGGACGTGTCATGGGTGAACTCTCTTGTCAAGGACGGCCACGCCGCCGGCGACATATTCGCGCAGTGGCCGGAGCAGGAGCAGATGGTGGCATGA
More
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| Protein seq | MSPATTGAPSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQSAMPVATHAAAAEPDVSWVNSLVKDGHAAGDIFAQWPEQEQMVA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 78.5264375 | 744.948547 | 115.398781 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0128200 | RBH | 13.282822 | 18.063101 | 9.860988 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g03760 | RBH | 8.299947 | 10.689150 | 2.661582 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0128200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0002070 | RBH | 1.847372 | 40.973923 | 11.360314 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0002090 | RBH | 2.108815 | 0.000000 | 8.702769 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0002150 | RBH | 6.454382 | 22.254597 | 10.668415 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0002020 | RBH | 0.755219 | 1.069201 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0002110 | RBH | 45.212440 | 53.610703 | 33.733135 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0002070 | RBH | 2.222707 | 3.075342 | 4.167950 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0026100 | RBH | 155.9170645 | 925.095215 | 36.413142 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0002060 | RBH | 4.665966 | 0.380857 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0002000 | RBH | 4.923733 | 35.921673 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0002100 | RBH | 21.099955 | 31.472902 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0002110 | RBH | 3.918348 | 3.800116 | 5.669480 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0002120 | RBH | 1.096740 | 26.143538 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G001980 | RBH | 1.735090 | 3.950552 | 4.942595 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0002130 | RBH | 5.532659 | 64.155075 | 22.862656 |
| Os XI: R9311 | R9311 | AGIS | R9311C05g18371 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_05g0022300 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_05g0021600 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_05g0021500 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_05g0022200 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0507996700.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0517563900.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_021429 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0515064100.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0516896500.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0508916300.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0510171900.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0512669900.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0508948300.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0508807500.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0507904900.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0509572300.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0516681100.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0510322100.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0510278500.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0510882300.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0507993900.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0507990900.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0510154100.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0509660500.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0509586300.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0521542300.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0512711900.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0507954100.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0507929500.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0509724700.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0509908700.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0513861500.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0508093500.01 | RBH | None | None | None |
