Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_04G0445100 | OGI:04084330 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr04:30041073-30044083 | ||||||||
| Gene Symbol | OsHMGB707 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | CCCACATCTCACCCGCACCTCGCCCTTCCCTTTTCCCCAACCAACCAAGACACACCACCCAATTCCCCTCTCCTCTTCGCTCTCATCTCCGCTTCCAGCCAGCCACTGCAACCCTAACCCTCCGCAAAGCCCTACCCCCCTTCCGCCACCATGGGCAAGGCCGACGCCGACGCCGAGTAAGTCACCCGCAACCTTGCTCTCTCCCTCCTCTTGTGGTTTGGGTCGGTGGAAGCGAGGGCCGATTTGCCTCCGTTTTTTTTTTTTTTTTTTTGTTTCTGCTGCTGCTGCTGTTGTTTCTGATGCGCGTGGCTCCCTCCGCCGTTGCAGGTTCAAGGCCGCCGGCAAGCGCAAGAAGGCCGGAGGCGCCGGCAAGCCCAAGCGCGGCCTCACCCCGTTCTTCGCCTTCCTGTGAGCCTTCCCTCCCTCCGTCTGCTTCCGCCTTTCGTGCCTCCAGATCTACGTTTTTCCCCCTTTCTGAAATTTGTGGATTTTTTTTGAATTTTTTTTTTTGGTCGCTGGTGGTGTGTGTGGCAGGGCTGAGTTCAGGCCGCAGTACATGGAGAAGCACCCAAACACCAAGGGCGTCGCAGCGGTGAGTACTCTACCTACTCTCCGTCTACCAGATTTGCTTCTAGGGTTTCGTTTCTGTGGCTCATATGTTGCTCTTGCTTGCTGATTGTGGTGGATTTAGGTGACCAAGGCTGCCGGGGAGAAGTGGCGCGCTATGTCGGACGAGGTTAGCAGATGCTGGCAGTTGTTGTACTAGCACGCTTTATTATGCTTCTGTGCGGGGATTCCCGCAACTGATATTTGCACGTCCAATAAGCTGATTACACTTGTCGCATATCATGTGAAAAAGCATATTATATGCAGTTTTCTGAGCTTTTAGCAGTTATTATTAGTTATGACCTGACGCTTTATAACCACAAATTATGCCATTCTTCTTCAGTACACGTGCTGTACAGTGGCTTTATTGTCTGTTGCAACATGTATCGATCCTTAGCATGCCTGTGCAGCAAAGCTATCTAGAGTGCTAGCTAGACTCATCCATGGTCCATGGATCACATCAAGCTCTTACAGGTAATGGGTGGAGATTCTATACAGCTGTGAGGTTCTTTGAGCCATGTTTTTGGGGGAATGCACTATAGGAAGTAAAATCACTTGACAAAAAAAATCCAGTGAAGGTGGCATGTCCTTTCAAGTCGCAAATATAACTCCCATGGGATAGAAGTTCAATAACACAACTTGTAGTTGTTGGTGAGCTCTAAGTCACAGGGAACGTGGATCGTGGGTGAGTTCCTCGTCCCGGGAATTTCGTCCCGGAACGAGGAACGGGAACGAAGCGGAACTTCGTTCTGAAAACGGAGGGGTCGTCGTTCCAGCGATGGAGGAACGAGAAGGGTGGTAGGATACGTTGAACAAAAAAAAATGAGAAGTGCAACTGAGCTACATATGCAAATATAGGATGATGATGTGAGAGGAACTAGCTTGTAGATCTGAAAAACCTTTGTCAAGAAAGGAAGAATGAATCCATGGCTCCTTCATTTAAGTGCTTGTATTTTCTCTAGTTATCTAGTTATTTATAAGTGAAATTGGATCTATAGCATCCAAAGTTAACATTTTTGATTTTATAGCAATGGAAGTTTATGGTTCATTTTAATAGCTTCCAAAACTCTCTGGTACTGTTCATAGCACTATTGTCAGTTTTCTCCTGTTTCTGTTACTTTGACCGTTGTGGGGGAACTGACCCCCCAACCCCACCCTCACTTGGTTACTGTAAACTTCACATCGTGTGCCCGGTGTGGGGAGTACTCATGCTAAGTTGGGATTTCTGGGTCAACAGCAGGCAAGGGGACGGGAAACAGAGAAAGGCGGTGGAAGTGCTACAAACAGTAACGGGTGGAGATTTTAGTGGTATTAAAGTAATCAGTGAATTTTCGGTGCTATAAAACCAAAAAGGGTAACTTTGGATGATGTAGAGCCAATTTGCCTATTTTATATTACAGGGCATGTGTCATTGCTTAGTTGGACTGCAGATATTTCAGTTAATTTTTAGGAATGGTGTCATTACTTAACTGGGCTACATTATTGGGTTGACGGCTCCCTTCACGGGATCTGGCCTCAACCATTGTCTGCTTATTTAAGGGAAATATCAATATATGGCATTTAACAGAATAATTAATATATCCTTGTTTAGGAGAAAGCGCAATATGGGGGCAAGAAGCCAGATGGCGAGAGCAAGCCCGCGGCCGCTAGCAAGAAGAAGGTATTATTGCCTTTGTGAATTATGTGATACTGACCTTGTACTCTTGCATTTTATATTCATTTTTGTGCTGATAAATGTGTTCTCTTACATTTTCATTAGGAGAGCACTAGCTCTAAGAAGGCTAAAACTGATGGTGCGGAACAGGAGGGAGAAGGTTCTGACAAGTCGAAGTCTGATGTTGAGGATGATGAGAATGATGGCAGTGGCGAGGTATATAGAACATTATATAGTACATGGCGGTGTTTAGCACTGAAATGGAAATGAATTATGCCTGTGCTTTATTGTCACTAACCTCATCTCAATTTCTTCCTTGCAGGACGAGTAGTAGTAAATAGCTTAGAGAGCTGCAGCTATGCAAATCGGTGTTCACTGCTTAGGGCTTTAGCTTTGCTATGTTACTGTTATCCTTGTTATGTCCTGTTGTAAGGAAAACGTGCGAATGAAGGTACTCCTGGGCCGTGGCATGCTGGAGGTGTCTCTGTTTAACTAGTAGCGAAGAAAATGCCGAATACTGTTGACTGCTTTTCTTTTGCGAACCTCCGCAGCATGTGTAAACTATTTTGCTTATTCACTGATCTGATGACTAGTCCGCGATTGGCTTTCTGTTAATCGCGTCTGCTGTATTCATATTCTGTTGTGTACTCAGTTCGTGCCGTTATTGGTGCATCTTTGGTTTATCTTTTTTATTCGTTGTGCCTTTTCATTCACAGTAATGCTCTGCCTGCGATATGTTCTTACTGCCGTG
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| CDS seq | ATGGGCAAGGCCGACGCCGACGCCGAGTTCAAGGCCGCCGGCAAGCGCAAGAAGGCCGGAGGCGCCGGCAAGCCCAAGCGCGGCCTCACCCCGTTCTTCGCCTTCCTGGCTGAGTTCAGGCCGCAGTACATGGAGAAGCACCCAAACACCAAGGGCGTCGCAGCGGTGACCAAGGCTGCCGGGGAGAAGTGGCGCGCTATGTCGGACGAGGAGAAAGCGCAATATGGGGGCAAGAAGCCAGATGGCGAGAGCAAGCCCGCGGCCGCTAGCAAGAAGAAGGAGAGCACTAGCTCTAAGAAGGCTAAAACTGATGGTGCGGAACAGGAGGGAGAAGGTTCTGACAAGTCGAAGTCTGATGTTGAGGATGATGAGAATGATGGCAGTGGCGAGGACGAGTAG |
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| Protein seq | MGKADADAEFKAAGKRKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQYGGKKPDGESKPAAASKKKESTSSKKAKTDGAEQEGEGSDKSKSDVEDDENDGSGEDE |
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| Function | HMG1/2-like protein [UniProtKB/Swiss-Prot:P40620] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_04G0445100 | OsMH63_04T0445100-mRNA-1 | Chr04 | 30041073 | 30044083 | + | maker | ||
| CDS seq | ATGGGCAAGGCCGACGCCGACGCCGAGTTCAAGGCCGCCGGCAAGCGCAAGAAGGCCGGAGGCGCCGGCAAGCCCAAGCGCGGCCTCACCCCGTTCTTCGCCTTCCTGGCTGAGTTCAGGCCGCAGTACATGGAGAAGCACCCAAACACCAAGGGCGTCGCAGCGGTGACCAAGGCTGCCGGGGAGAAGTGGCGCGCTATGTCGGACGAGGAGAAAGCGCAATATGGGGGCAAGAAGCCAGATGGCGAGAGCAAGCCCGCGGCCGCTAGCAAGAAGAAGGAGAGCACTAGCTCTAAGAAGGCTAAAACTGATGGTGCGGAACAGGAGGGAGAAGGTTCTGACAAGTCGAAGTCTGATGTTGAGGATGATGAGAATGATGGCAGTGGCGAGGACGAGTAG
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| Protein seq | MGKADADAEFKAAGKRKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQYGGKKPDGESKPAAASKKKESTSSKKAKTDGAEQEGEGSDKSKSDVEDDENDGSGEDE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 117.2197995 | 120.977978 | 203.1452635 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0564600 | RBH | 33.948822 | 29.934723 | 51.769958 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g47690 | RBH | 21.271360 | 18.431885 | 12.420938 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0564600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0023150 | RBH | 7.615887 | 39.903366 | 35.609138 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0023880 | RBH | 3.451508 | 13.436146 | 20.426394 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0023600 | RBH | 17.490597 | 60.368782 | 56.554852 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0023360 | RBH | 2.795564 | 2.081933 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0023470 | RBH | 103.890709 | 104.503883 | 104.703888 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0442300 | RBH | 13.5667805 | 13.6748585 | 83.7810365 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0022290 | RBH | 5.843108 | 7.174409 | 10.576740 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0448900 | RBH | 91.828274 | 58.4338285 | 193.299011 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022800 | RBH | 4.699120 | 3.025140 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0022630 | RBH | 11.068860 | 76.576706 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0022750 | RBH | 97.745903 | 65.160042 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0023130 | RBH | 11.493622 | 10.925947 | 17.865454 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0023340 | RBH | 4.181066 | 63.438293 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G022560 | RBH | 6.484366 | 35.783127 | 33.370518 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0022460 | RBH | 20.064535 | 158.110367 | 78.916801 |
| Os XI: R9311 | R9311 | AGIS | R9311C04g17075 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_04g0293200 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_04g0286500 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_04g0269000 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_04g0287000 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0407445100.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0416718700.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_016954 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0414219900.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0416042300.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0408286900.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0409267700.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0411823100.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0408270500.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0408225700.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0407362300.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0408725300.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0415826500.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0409504300.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0409398300.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0410063300.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0407436100.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0407428900.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0409225700.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0409079700.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0408890500.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0420441500.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0411868300.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0407339500.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0407372100.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0408869700.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0408695500.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0412491100.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0406461400.01 | RBH | None | None | None |
