Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsMH63_04G0439000 OGI:04083340 | 42/50 Minghui 63 | MH63RS3 | HZAU Chr04:29667715-29673263
Gene Symbol OsbHLH016,OsS1,OsB2,OSB2,Kala4
Mutant -
Stuctural Variations

117534_MH63RS3_OTH0448700,117534_MH63RS3_DEL0448650,117534_MH63RS3_TRA0448660,

DNA seq

GAGTCTATTAGTAAGCGGTAATTCAGACGGCACCAATAGTACATGGAGGTAGAGAAACGCTTAAGGGTTTTCCGGCTAGCTCCACAAGGTGGTGTGATAGACGACCTGGATTCAAAACCTCACCCCTTCTAATTATTTGATATTAGATTCTTCCCTAATATTCGCGTCTTTTATAGTACACGAGGTAATTCGGAATTTTTTTCCATAATGAAAACGATAACTATATATCATACGTACGGTACCTCGTCAACACCGTATGACATCCATCTCAGAGACCTCCTGCCCGGTGATCTTATACATGCATATCATATACGTACGGTGTAGACGAGGTACCGACGAGGTACCACCACTGACACCGATCTCATAGACCTCCTTCCCGGTGATCTTACGGCGCCTTCCCCTGTCCAATTTCGGTTGGGCGCCAACGCGATGGCTCCCTGCTGCTGGACTCCAGCTCTTTCACTCTTTTCTCTAACACTTTGAGGTAGGTTATCGTTTCTGCAAGTATGGATGCCTTGTCAACCTGCAGGGACAATCCACAGCTCGATGAATAATACTACTCCTATATAACTTTCAGTATGGAACGCTAAGTTAACTAACCTTGCGGACGGAGGGGAGTAGTGACTTCAGAATGAGGAACATCTCGTTGAGCTTCTCTCGGCGCCTTCTCTCTGACATGACATGGCTCTTGATGTTACTTCCTGGAGTCGTCGTTATTGCCACGCTACCACGATCATCAATATTACTCATCCATGCGGTGCCGCCGCCTACAGCTTTCTTCAGCAACTTCTGTGACTCTATGCCTGCAGTCATCGGCACGGCCACCACCTTCTCCGCCGGGTTCGCTCTTTTCCATGACACGAAACACGAGGCGTGAGAGTATGCAACGCCGTTGACATCGTTAGCCGCCGCCGCCGCCGCAGCCACCGTCTCCCGTGCCGACGTCGGGACTAGCTGATAAGAACCGAGGTCCAGGTCCAGCTCCTCGCAGAGGCTGTAGAACTCGTCGGTCTCCATGGTGATCGTTTCGGGGTTGGCGCCGTTGGTCTCGCACTCAGCGACGACGACGTCGCCTAGCTCGTCTTCTCCCTGGAGTATGACCATCTGGTGCTCTTCAATGAGGCCATCGAACACGGTGTCGGCATCTTCCGTTTCGTCTAGAGAAGGGGTAGAACTCGGTACCTCTAAGCATATCGGAAACTGAAGCTCCTTCAAATATGCAACAATTCGGTTTACCAAGTTTGGGTCCTCCGAAACCTGGGAATATAATTCAATAGTAATCCATATATATTGTGAAGAACTCAGACTATAATGAGTGTAAGAGACTATAATGAGACTAGCAAAAACTACATCTTCAACCGCTGCATGCACCCTCTAGTTTTAAAAAATATAAGTTAACATTTCGATTTCGTGGAGTGTCTTTGCTCGTAGCTCAGTAGTTCGTAAAATGTCGTTTTGTTCATTAAAGTTAAGGGTACGTCCCCTCATTTTGTACATGCAACGTAGTGAAGCTAGGATTTAGATACGAGGAAGATGAACTTCACAAAGCGATTACAATTATTAAAAATATAGCATAAAAATATACGTAATGTTTCCCAAAGGTACGTAATATATCGTATCAACTTAAAAATAGCACATGATAATAAAAAAGGTAGGTATGTTGATATACCGAATATATCTATTCATTTCAATTTAGCCTATGAGTATTAAGCAGACAATCATAAGCGGTGATAGTATCATCCGAGCTAAAATTCCAAATAAATTGACAAGCAATCCAAAAAAAAACTATAATTTAGCAAAATGAGAAACAAACTATATACGCATCTTCATGCAAGTATTAACTAATATTTTAGAAAAAAATTGAAATTTAATTGGAGAGGTGAAATTATACCTTTGAAGTGTTAGACACCTAATGATATAAAAAAATATACTCCATTTTAAAATCTATGATGCCATTGACTTTTCACATAATGTTTGACTATTTTTTATTAAGAAAATATATAAATTTCATTTATTTTATTATAACTTGTTTTATCATCAAATAAAATATAATTTTAACTTATACTTTTACATATTTATACTAAATTATTAAATAAGATTAATGATCAAACGTTATGCGAAAAGTTAACGGTGTCATATATTTTAAAAAGAAAATAGTGCATGGTTATTTTTACTTATATGTTGATAAAAGGTAGTATTTAAAAGCAAAAGTAAACTATTGGGGTGTAGGAAAGGAGGGGCTGGTTGTTACTGGGCTGTTGGGGAAGGCCAGGCCCCATCCCACCACAGTGGCTGCGCCTCTATTCATATATACCAGTAAAAGATTCTAGAAAAAATATATGATGATAACATTAATGGTATAGCTAGCTGCACATAAACTTTAATTGTCACTTGATTTCTTACCTGCGTATTATGGATGCGGCACATGCTATATATACTAGTAGTTTGATATACACGCTATAAATAATGAGGGAATCTTGGATGCTACGGAACATTGCACTATACTAGCTTGTCCCTAGCAGCTCCCTGCCAGCATAGCAACGAAATGCCCCGGACATGGTATAACATAGTGAGAATCCATTATATGGCACCGAGTTTGTCACATGTCTACGATCTGCCACTGACTTTATAACGTTCTATAATATACCATCAACTTTTACTTAACTTCTATGATTTACCATTGTCATCCGGTTAGCTTTCATTAGTAATGTACAATTTTGTCCAAATGACTAAAATACCCCTAAAACAAAAACTTCTAAAATTTGAGCAAAAATTCTGAAATATTATATTTTAAATTTTTGGTCAAATTTTGGATGTTTCCAATCTTATATTTATAATATGATATTTTACAATTTTTATCATATTTTGGTTATTTTGAAAAAAAATACAATACAAACGAAGGTTAAACTGACAGTTATGGTAAATTGTAAAAGTTAAGCAAAATCGATAGCATATTATAGAACGTGACAAAATCAATGACAAATCGTAGACCTGTGATAAACTCAGTGACATATAATAGGTTCACTCTATAACATATACCAAGCATGTGATACTCTGTTATAACATACTAGTATACTCTTATGTTGGTCGATCATCACTAGGCGATTGAGCTAGCTACATATATATAGGTCCATAGTTTTTCGTGCTGAGTGATCCAATGAACTTACCGGATCAGTGGTTCCCAGCTCAAGCACGCCACTCATGAAGGGGATGCAGACAATTGTCTGTAAAATGTATAGATATTTCAGATGGAGTCAGAGATATCGACGTACACGTACAGTATACATCAATTTGAAAACTGAAATACTCCGTACTATGTACAGTATACATCAATTTGAAAACTGAAATACTCCGTACTATGTACAACTGTACCTACATACCTGAATAGACACGCTCTTTGCATACGATATTATTAGTGGACGGAGTTGGACCACACAGAGAGAGAGAGAGCATGCGAGTTAGATCATGACATGACAGGGAGATAAATAACAACTAAATATGATGATTAGATCAAGGAGAATGCATGAACATTATCCTTTTTTTCTCGGGAACTGAACATTATATTCTTTGGAGGCATAAGGGACGATGCCATGAGCAGCTAGCACAGCATGGGAAATATATATGTACCTTCGCTAAGAGCGCACGTAGAAAGGTTTTGCTATCTGCAGACTGAGCATTGCACAACCAAACAGATCGATTGCTTGCATAGCTTCTGCCGGGTAACCTGGCAGAATGTACCCCAGCAGATCAATAACAACAACACGGTAAAGCAAATTCTTGTCAACATGGGACTCATGAGAGACATTGCCAGTGGTGAAGTGACGTATCTTTATATAGGTGATCTAATTTATATAATTTTTTAAAATACCTTAAATACAATAAAGTTAAAAGTATAGATTGATGAAATGAGTTTTTTTTTCAAAAGTTTATTTTTCACATATGTGTATATATACATTGGGCTAGAATTTTTTTGGGTGGTCCCGAAATCACCAGAACCACCCTTAGATCCGCCTATGAACATTGCTAGGCTGCAGTGGCGAAGCCACCGCCCGGCTGCCTGGGCAGCTTCCCGGACTCGCTAGTGAAAACTACATTAAATTTCAATATTAATGAGTAAATAAAATTTTTAATAGCAAATACTAGTTATATCAAAATTTGTTTGGGCTTAAAAATCTTTCTGACTGCGTCACTGAGCTTATACCCAGCTATAAGCTTTGTGTTCTCTCCTACGGAGTATTATTGGAGTTCTTTTTTTTTTATAAACGTATTATTGGAGTTGCTAGCAGATCAACCGACAAGTGATCAGTCATATGTGTAGGGCAGATCAACGGATCATCTCATCATGCATGTGTGCGTTGGCTGGCAGCAATTAGCAGATGAGATACGCACCCTTGGCCGGGTCGAAAGGCGTAGGTCATGCAGACAACGTAGTACCATTCTGTGTCCGCGATATCTTCCGGCGACAGTGCGGCGACGGGCTTCCTTGCCCGGTGGTCGCACTCGCCGGACAGGAGAGAGTAGTAGAGCTCCCTCAGTTGCTCGCTTCTCCTCCGCAGGACGAGCTGGTCAGCGGTGAGGTCCTCTAAGTTGGATATCTTCCTCGTCTTTACCTCGCCGTTGTAGAATCCATCGTTCCAAGTCAGAACTCTACAGGTAGTGTTTTATACATATTGTATGAATTAATACGATGGACATAGAATGACAGTGTCCTACGTAATACAGGAATTAATTAAATACTCTCTCCGTTTTAAGTTATAAGATGTTTTGACTTTAGTTAAAGTCAAACTGCTCTAAGTTTGATTAAGTTTGTAGACCAATATAGTAATATTTATAATACTAAATTATTTTCATCAAATTAATAATAATTTAATTTTATAATAAATTTATTTTGGGTTGAAAATGATATTATTATTTTTTTCTATAAACTTGGTCAAGCTTAAAACAGCTTGATTTTTACCAAAGTCAAAACGTCTTATAACCTGAAAATAGTTGGAGTAACATATAGGTTCATTTTTGATCTTTAATTCAAAATGAAGTGAAATATAATTATAGATGCAGACCTGACTGATCACTGATGCATGTTTAGTTATACTAGTATGGAGTATATATGGCATGCACAAGTGGAAACTAATGATGACCTATGCAACTGCATTCATAATAATGAACTAGAGTAATTCATAGTCTAAAAAAATGAACTAATTATATTGTTATTACCCCGGGAGACTGGTTGAAGTGGACCAAAAGATGGTGTAACTCCAACTGATGCTCCTCACAGCAGCAGCAAGCCGGCTCCTGAAGTGGTTCGTCCCTGGTTGTAGGGCTTCTTCCTGAACTGGAGGAGCAGATGCCATCACCACGATAGAAATCTAGAACTTAACTGTTTAATTTCCTGCAGATATATGGTGCAAAATCAAGGAAAGAAGCTGAGAGGCAGATGGTGAAGTTATTACTGTTAGTTAGTACGTTTGCAAGCAAATAAGCGTAGAATCAAGGAAGCTCTACATCTTATTAAGTATTGGAGGAAGAGCACCATAGCTCAATCTTCTTCT

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CDS seq

MASAPPVQEEALQPGTNHFRSRLAAAVRSISWSYTIFWSTSTSLPGVLTWNDGFYNGEVKTRKISNLEDLTADQLVLRRRSEQLRELYYSLLSGECDHRARKPVAALSPEDIADTEWYYVVCMTYAFRPGQGLPGRSYASNRSVWLCNAQSADSKTFLRALLAKTIVCIPFMSGVLELGTTDPVSEDPNLVNRIVAYLKELQFPICLEVPSSTPSLDETEDADTVFDGLIEEHQMVILQGEDELGDVVVAECETNGANPETITMETDEFYSLCEELDLDLGSYQLVPTSARETVAAAAAAANDVNGVAYSHASCFVSWKRANPAEKVVAVPMTAGIESQKLLKKAVGGGTAWMSNIDDRGSVAITTTPGSNIKSHVMSERRRREKLNEMFLILKSLLPSVRKVDKASILAETITYLKVLEKRVKELESSSREPSRWRPTEIGQGKAP

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Protein seq

MASAPPVQEEALQPGTNHFRSRLAAAVRSISWSYTIFWSTSTSLPGVLTWNDGFYNGEVKTRKISNLEDLTADQLVLRRRSEQLRELYYSLLSGECDHRARKPVAALSPEDIADTEWYYVVCMTYAFRPGQGLPGRSYASNRSVWLCNAQSADSKTFLRALLAKTIVCIPFMSGVLELGTTDPVSEDPNLVNRIVAYLKELQFPICLEVPSSTPSLDETEDADTVFDGLIEEHQMVILQGEDELGDVVVAECETNGANPETITMETDEFYSLCEELDLDLGSYQLVPTSARETVAAAAAAANDVNGVAYSHASCFVSWKRANPAEKVVAVPMTAGIESQKLLKKAVGGGTAWMSNIDDRGSVAITTTPGSNIKSHVMSERRRREKLNEMFLILKSLLPSVRKVDKASILAETITYLKVLEKRVKELESSSREPSRWRPTEIGQGKAP

Function Anthocyanin regulatory Lc protein [UniProtKB/Swiss-Prot:P13526]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsMH63_04G0439000 OsMH63_04T0439000-mRNA-1 Chr04 29667715 29673263 - maker
CDS seq

ATGGCATCTGCTCCTCCAGTTCAGGAAGAAGCCCTACAACCAGGGACGAACCACTTCAGGAGCCGGCTTGCTGCTGCTGTGAGGAGCATCAGTTGGAGTTACACCATCTTTTGGTCCACTTCAACCAGTCTCCCGGGAGTTCTGACTTGGAACGATGGATTCTACAACGGCGAGGTAAAGACGAGGAAGATATCCAACTTAGAGGACCTCACCGCTGACCAGCTCGTCCTGCGGAGGAGAAGCGAGCAACTGAGGGAGCTCTACTACTCTCTCCTGTCCGGCGAGTGCGACCACCGGGCAAGGAAGCCCGTCGCCGCACTGTCGCCGGAAGATATCGCGGACACAGAATGGTACTACGTTGTCTGCATGACCTACGCCTTTCGACCCGGCCAAGGGTTACCCGGCAGAAGCTATGCAAGCAATCGATCTGTTTGGTTGTGCAATGCTCAGTCTGCAGATAGCAAAACCTTTCTACGTGCGCTCTTAGCGAAGACAATTGTCTGCATCCCCTTCATGAGTGGCGTGCTTGAGCTGGGAACCACTGATCCGGTTTCGGAGGACCCAAACTTGGTAAACCGAATTGTTGCATATTTGAAGGAGCTTCAGTTTCCGATATGCTTAGAGGTACCGAGTTCTACCCCTTCTCTAGACGAAACGGAAGATGCCGACACCGTGTTCGATGGCCTCATTGAAGAGCACCAGATGGTCATACTCCAGGGAGAAGACGAGCTAGGCGACGTCGTCGTCGCTGAGTGCGAGACCAACGGCGCCAACCCCGAAACGATCACCATGGAGACCGACGAGTTCTACAGCCTCTGCGAGGAGCTGGACCTGGACCTCGGTTCTTATCAGCTAGTCCCGACGTCGGCACGGGAGACGGTGGCTGCGGCGGCGGCGGCGGCTAACGATGTCAACGGCGTTGCATACTCTCACGCCTCGTGTTTCGTGTCATGGAAAAGAGCGAACCCGGCGGAGAAGGTGGTGGCCGTGCCGATGACTGCAGGCATAGAGTCACAGAAGTTGCTGAAGAAAGCTGTAGGCGGCGGCACCGCATGGATGAGTAATATTGATGATCGTGGTAGCGTGGCAATAACGACGACTCCAGGAAGTAACATCAAGAGCCATGTCATGTCAGAGAGAAGGCGCCGAGAGAAGCTCAACGAGATGTTCCTCATTCTGAAGTCACTACTCCCCTCCGTCCGCAAGGTTGACAAGGCATCCATACTTGCAGAAACGATAACCTACCTCAAAGTGTTAGAGAAAAGAGTGAAAGAGCTGGAGTCCAGCAGCAGGGAGCCATCGCGTTGGCGCCCAACCGAAATTGGACAGGGGAAGGCGCCGTAA

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Protein seq

MASAPPVQEEALQPGTNHFRSRLAAAVRSISWSYTIFWSTSTSLPGVLTWNDGFYNGEVKTRKISNLEDLTADQLVLRRRSEQLRELYYSLLSGECDHRARKPVAALSPEDIADTEWYYVVCMTYAFRPGQGLPGRSYASNRSVWLCNAQSADSKTFLRALLAKTIVCIPFMSGVLELGTTDPVSEDPNLVNRIVAYLKELQFPICLEVPSSTPSLDETEDADTVFDGLIEEHQMVILQGEDELGDVVVAECETNGANPETITMETDEFYSLCEELDLDLGSYQLVPTSARETVAAAAAAANDVNGVAYSHASCFVSWKRANPAEKVVAVPMTAGIESQKLLKKAVGGGTAWMSNIDDRGSVAITTTPGSNIKSHVMSERRRREKLNEMFLILKSLLPSVRKVDKASILAETITYLKVLEKRVKELESSSREPSRWRPTEIGQGKAP

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0419605 0 0.150094

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0557500 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g47059 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os04g0557500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0022650 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0023380 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0023090 SBH 0.0 0.0 0.761336
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0022860 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0023000 RBH 0.0 0.0 0.000000
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0021840 RBH 0.0 0.000000 0.000000
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0441300 RBH 0.01113 0 0.0908905
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0022330 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0022160 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0022260 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0022670 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0022860 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G022070 RBH 0.0 0.0 1.691957
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0022000 RBH 0.0 0.0 0.0
Os XI: R9311 | R9311 | AGIS R9311C04g17020 RBH None None None
Os XI-adm: HZ | HZ | PKU OsHZ_04g0287500 RBH None None None
Os XI-adm: J4155S | J4155S | PKU OsJ4155_04g0281300 RBH None None None
Os XI-adm: LK638S | LK638S | PKU OsLK638S_04g0263500 RBH None None None
Os XI-adm: XL628S | XL628S | PKU OsXL628S_04g0281400 RBH None None None
Os GJ-temp: 02428 | 02428 | SICAU Os02428G0407421400.01 RBH None None None
Os cB: Basmati1 | Basmati1 | SICAU OsBasmati1G0416678600.01 SBH None None None
Os O.glaberrima: Ogla | OglaRS2 | DIADE Oglab_016899 RBH None None None
Os XI-1A: CN1 | CN1 | SICAU OsCN1G0414186200.01 RBH None None None
Os XI-1A: D62 | D62 | SICAU OsD62G0416009400.01 RBH None None None
Os XI-1A: DG | DG | SICAU OsDGG0408264000.01 RBH None None None
Os GJ-temp: DHX2 | DHX2 | SICAU OsDHX2G0409230000.01 SBH None None None
Os XI-adm: FH838 | FH838 | SICAU OsFH838G0411792800.01 RBH None None None
Os XI-1A: FS32 | FS32 | SICAU OsFS32G0408248400.01 RBH None None None
Os XI-1A: G46 | G46 | SICAU OsG46G0408203200.01 RBH None None None
Os XI-adm: G630 | G630 | SICAU OsG630G0407341800.01 RBH None None None
Os XI-1B: G8 | G8 | SICAU OsG8G0408694200.01 RBH None None None
Os XI-1A: II32 | II32 | SICAU OsII32G0415796000.01 RBH None None None
Os XI-1B: J4155 | J4155 | SICAU OsJ4155G0409470200.01 SBH None None None
Os GJ-temp: Kosh | Kosh | SICAU OsKoshG0409360800.01 SBH None None None
Os GJ-temp: KY131 | KY131 | SICAU OsKY131G0410025200.01 RBH None None None
Os GJ-trp: Lemont | Lemont | SICAU OsLemontG0407314200.01 SBH None None None
Os GJ-adm: LJ | LJ | SICAU OsLJG0407404200.01 SBH None None None
Os GJ-sbtrp: NamRoo | NamRoo | SICAU OsNamRooG0409191400.01 RBH None None None
Os XI-1B: R498 | R498 | SICAU OsR498G0409061000.01 RBH None None None
Os XI-1B: R527 | R527 | SICAU OsR527G0408866800.01 RBH None None None
Os XI-1B: S548 | S548 | SICAU OsS548G0420399000.01 RBH None None None
Os XI-2: TM | TM | SICAU TMG0411836600.01 RBH None None None
Os XI-3: Tumba | Tumba | SICAU OsTumbaG0407319200.01 RBH None None None
Os XI-adm: WSSM | WSSM | SICAU OsWSSMG0407351200.01 RBH None None None
Os XI-1B: Y3551 | Y3551 | SICAU OsY3551G0408839600.01 RBH None None None
Os XI-1B: Y58S | Y58S | SICAU OsY58SG0408650600.01 SBH None None None
Os XI-adm: YX1 | YX1 | SICAU OsYX1G0412462000.01 RBH None None None
Os GJ-temp: ZH11 | ZH11 | SICAU OsZH11G0406486300.01 SBH None None None
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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