Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_04G0380600 | OGI:04074090 | 33/50 | Minghui 63 | MH63RS3 | HZAU | Chr04:26012100-26013244 | ||||||||
| Gene Symbol | OsCCCH-Zn-9,OsC3H29,C3H29 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | |||||||||||
| DNA seq | ATGACAGAATCCACAAAGATCAAGTATTGTCGCGCAGATTCCGGCTCCGGCTCCAAGCCCTTGTCAGCAGAAACAAAGACACGTTTGATGGCAGACGGGAAGAAGATTGACGAAGAAAAGAAAGACGGCACTGCAGTTCGTCGTGTCCTCTTCTGGTTCGCCGTCTTGGTCATCCGGTTCGCGCTCCTGATGGCGATGCACTACTACCACGTACGGATGATGGCGAAACTTGAAGGAACTAATAATGATGGTTTTGGCCTTTTTCTTACATGTAGCCACTATGTTTTAATGGCTGGCTTTATTATAACCAGCTGCATGGGTTACTAGCTAGCTACATGGGTGCCTAGCCGTTTTGATGGCTTTGTTCCAATAATATCGTTAGTGTAAGCTATACCTTTTTAGTATGTCCCTTCTTCTGAATTTAAAGCTTTACTGTAATGAATATTTCTCATATTTATATATATATTGTTTCATCCGATAGTACTGTTAATGCACCTTTGTATTGTTTTCCATTGGGAAGTCTATCTATTTTAGATTTTCGTTATGCTTTGTGCGGTTGTCCTTTCCTGTACTATCATCGTGGAAGATTTACATAATTGCACAGGCTGTTCCGTTACTGAACAATGAGATGGGTTGGAACAATTGGCTAGGGTCTAGTTAGGGGATTAGGGTTTTTTTTTTGGGTGGGGTAAACACAAGTTCGGTACGGGCGAGGAGAGCGCAAGAACAAGATGATGATGATGGGTGAGGGCGCGCATGAACATGTGGCGGCGGTGAGCGGCGTGGAGGGAGGAGGAAGCGGTAGCGACAGTGAGATGGCCGCGCGCCATATACCACCAGCTCGACGCGACGCGGCATTACCTGCCGTCGAACGAGGCGGCGGCGGTGGACGCGTACGCGTGTGATGGGCTTAGGATGTAACGAGTTCAAGGTGCGACGGTGCGCGCGCGGGCGGAGCCAGGACTGGACGGAGTGCCCTTTCACGCGTCCGAGGGAGAAGGCGCGGAGGAGGGACACCGGACACGAGGCCGTACTGCGACTCTGGCACGGCGTGCCTGGACTTCCGCAAGGGCGGGTGCAATCACGGCGACGCGTGCGAGTTCGCGCACGGGGTGTTCGACAATTCGAGTGCTGATCTCGCGTAA
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| CDS seq | ATGACAGAATCCACAAAGATCAAGTATTGTCGCGCAGATTCCGGCTCCGGCTCCAAGCCCTTGTCAGCAGAAACAAAGACACGTTTGATGGCAGACGGGAAGAAGATTGACGAAGAAAAGAAAGACGGCACTGCAGTTCGTCGTGTCCTCTTCTGGTTCGCCGTCTTGGTCATCCGGTTCGCGCTCCTGATGGCGATGCACTACTACCACGTACGGATGATGGCGAAACTTGAAGGAACTAATAATGATGTTCGGTACGGGCGAGGAGAGCGCAAGAACAAGATGATGATGATGGGTGAGGGCGCGCATGAACATGTGGCGGCGGTGAGCGGCGTGGAGGGAGGAGGAAGCGGTAGCGACAGTGAGATGGCCGCGCGCCATATACCACCAGCTCGACGCGACGCGGCATTACCTGCCGTCGAACGAGGCGGCGGCGGTGGACGCGATGTAACGAGTTCAAGGTGCGACGGTGCGCGCGCGGGCGGAGCCAGGACTGGACGGAGTGCCCTTTCACGCGTCCGAGGGAGAAGGCGCGGAGGAGGGACACCGGACACGAGGCCGTACTGCGACTCTGGCACGGCGTGCCTGGACTTCCGCAAGGGCGGGTGCAATCACGGCGACGCGTGCGAGTTCGCGCACGGGGTGTTCGACAATTCGAGTGCTGATCTCGCGTAA
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| Protein seq | MTESTKIKYCRADSGSGSKPLSAETKTRLMADGKKIDEEKKDGTAVRRVLFWFAVLVIRFALLMAMHYYHVRMMAKLEGTNNDVRYGRGERKNKMMMMGEGAHEHVAAVSGVEGGGSGSDSEMAARHIPPARRDAALPAVERGGGGGRDVTSSRCDGARAGGARTGRSALSRVRGRRRGGGTPDTRPYCDSGTACLDFRKGGCNHGDACEFAHGVFDNSSADLA |
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| Function | Putative zinc finger CCCH domain-containing protein 29 [UniProtKB/Swiss-Prot:Q7XSB2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_04G0380600 | OsMH63_04T0380600.1 | Chr04 | 26012100 | 26013244 | + | maker | ||
| CDS seq | ATGACAGAATCCACAAAGATCAAGTATTGTCGCGCAGATTCCGGCTCCGGCTCCAAGCCCTTGTCAGCAGAAACAAAGACACGTTTGATGGCAGACGGGAAGAAGATTGACGAAGAAAAGAAAGACGGCACTGCAGTTCGTCGTGTCCTCTTCTGGTTCGCCGTCTTGGTCATCCGGTTCGCGCTCCTGATGGCGATGCACTACTACCACGTACGGATGATGGCGAAACTTGAAGGAACTAATAATGATGTTCGGTACGGGCGAGGAGAGCGCAAGAACAAGATGATGATGATGGGTGAGGGCGCGCATGAACATGTGGCGGCGGTGAGCGGCGTGGAGGGAGGAGGAAGCGGTAGCGACAGTGAGATGGCCGCGCGCCATATACCACCAGCTCGACGCGACGCGGCATTACCTGCCGTCGAACGAGGCGGCGGCGGTGGACGCGATGTAACGAGTTCAAGGTGCGACGGTGCGCGCGCGGGCGGAGCCAGGACTGGACGGAGTGCCCTTTCACGCGTCCGAGGGAGAAGGCGCGGAGGAGGGACACCGGACACGAGGCCGTACTGCGACTCTGGCACGGCGTGCCTGGACTTCCGCAAGGGCGGGTGCAATCACGGCGACGCGTGCGAGTTCGCGCACGGGGTGTTCGACAATTCGAGTGCTGATCTCGCGTAA
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| Protein seq | MTESTKIKYCRADSGSGSKPLSAETKTRLMADGKKIDEEKKDGTAVRRVLFWFAVLVIRFALLMAMHYYHVRMMAKLEGTNNDVRYGRGERKNKMMMMGEGAHEHVAAVSGVEGGGSGSDSEMAARHIPPARRDAALPAVERGGGGGRDVTSSRCDGARAGGARTGRSALSRVRGRRRGGGTPDTRPYCDSGTACLDFRKGGCNHGDACEFAHGVFDNSSADLA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0487550 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g41060 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0487550 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0017870 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0018670 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018360 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0018090 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018290 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017080 | RBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0380300 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0017580 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0017420 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0017460 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0017930 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018080 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G017370 | RBH | 0.0 | 0.0 | 1.631313 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017310 | RBH | 0.0 | 0.0 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | R9311C04g16489 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_04g0235300 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_04g0229500 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_04g0214800 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_04g0229200 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | NA | NA | NA | NA | NA |
| Os cB: Basmati1 | Basmati1 | SICAU | NA | NA | NA | NA | NA |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_016399 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0413821300.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0480001084.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0408007900.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: FH838 | FH838 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0407994700.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0407954300.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: G8 | G8 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: II32 | II32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: J4155 | J4155 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: Kosh | Kosh | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0409613300.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | NA | NA | NA | NA | NA |
| Os GJ-adm: LJ | LJ | SICAU | NA | NA | NA | NA | NA |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0408796300.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0408570300.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0419925100.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0411464300.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0407076100.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y3551 | Y3551 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y58S | Y58S | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: YX1 | YX1 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: ZH11 | ZH11 | SICAU | NA | NA | NA | NA | NA |
