Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_04G0262100 | OGI:04052800 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr04:17173477-17176939 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | 125619_MH63RS3_OTH0421920,127564_MH63RS3_OTH0434270,117534_MH63RS3_OTH0434580,OglaRS2_MH63RS3_OTH0437930,
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| DNA seq | CAACGCGCCGCGCACGCCTCATTCCCCTCCTCCGGTAGAAGACGAGGAGCCGAGGCGGCAGCCAGCTCAGCAGTCTCCTCCGCCCTGCCGCCGCCGGCGACCATGCCCGGCGACCATGCCGGCGCCGGCGCCGCCGTCGGCGCAGCGAAGGCCATGCAGCTCAAGGTGCTGATGCCTTCTTCCTTCCACAAGATGGTAAGAAGGAGAAGCTAGCCACCATTAATTTTCGGCGCCATTTGCTCTTTCTTTCTTTTGCTTTCTTGGTCTCTCCCCGTACCGTTTGTGCTCGATCCGTACTCGCCTTCGATGTCTGCGCGCAGCGCATCTCCGACGAGCTCGCCGCGGACCTCCTGGGCGAGCGCGGCGACGGCGGCGGCGGCGGCGGTGGAGCGCCGCGGCGGGCGGCGCGCGTGGTGAGCCCGGTCGGCAAGGTCTGGGACGTCGAGGTCGGCCGGGACGACGACGGCGACGGCGGCGGCGCGTTCCTGGGGCGCGGGTGGGCGGAGTTCGCGGCGGCGCACGGCCTGGGCATGGGGTGGTTCGTGGTGGTCCGGCACGAGGGCGGTGGCGTGCTCACCGTCAAGCTGTTCGACACCACCTGCTGCCTCTGGGACTTCGGCGCTCGCCCTGCAGGTAATCCAAAGGATTATTTGCACGCAAAATTTAAGTTTATCATTTTGGTTTTTGTTCTCTTTGGAGAAATACGGGTAATCAGATTGAACATGGAAATCCACTTGCAAAATGTTTTTTTGAAAAATAAAATATACAAGATGATCAATTAGACAATTACTATGACATAAATGGTCATCCGGCAGAAATGAATAGCGATAGAGTATCACTGTCGGTTCACTTTGTTTTCCGCTAAAATCAAAATGAACAGGCAGATATATCGTTTTTAACTGGCACTCTAGCAGTGATATTGTTTCTATGGTAGTGTGACTAGATCATTTTGATAAAAAAAAATAATATGACTGGAACCGGCACCTATATACTACTACTTAAAGATGTTAGTTGTTGTAAATAATCGGCACCTGTACTGCCAACCACGTGGTATGAAAGTTTATAATGGGTATCTATATTCATTATAGGTGCTGGTTTTGAAACTGACACTGATAACCAATTTCATCGATGTCGTTTACTATGTGTTGGTTGGGGAAACGGGTTTTCCAACTGGCACCTATCAATCTTTCTGTAATAGTGTTATTACCATTGGTTTGTCGGTTAAACATTTTCTTTTACTAGTTGTGACAACCAGAAGCGGTAGAGCAAGAGACGCGTCACATAAGCCGCAATTCTTGAGGGTACTTCTACCGGGTTTCATGGAAAAGATGGTGCGCAAACTCATATCCTATTCCTGCGGCCTTTGTTTTCCGCCTACTGGTTTACCTTTTACATTACTATAATTTTCAAAATACAATTTTTTTACTGCTGATTTCTATTGCCAAGCATTTGAATAACTTGATGATAATAATACTATGAAAGTATTTTTGAAGTGAAATCTACAAATATGATTTCTAAATATTTAGAAAGTTACCGAAATTTAAAAATCAAAATTATCACTTCTGCCACTAGCTAGTTTAATTATCAAGCATCTGTTAGCCAACAAACTTTATAGTTTTACCATTCCTCTTTGCATTCCATCATGGTGCAATTCGCAATAGCACACAGGTCAAATTGTCAATGATACCTCACTTAGAACTAGACAGAGCTCTCTCCTTGAACAAGATTGATCCATGTTTATGAGAGAGGTAGTTGTGACTTTTCACGTCAATCTAACGGCTCAAACATAGGGAATGTTGTCCATTTCTGTAGCGAGAAACCTGATAATTTGATCTACCTAATTAGTGACATGAACAAAATAATCCCTCGATATGCCTTTCTGAATTTGCCTTTCTCTTGTAAATAGACCCTTCTTTATCAATATATAAGGCAATCTTCTTGTCTCTTTCTTTCAAAAAAACAAAAAGAATTTGCCTTTCTGAATATTCAGAGTTGAGATGTCAGATGTATATATCATGAAACTATGCATATTGCACTGACATATCTGTTCTAACAGAGGATCCCTGCTAAGTTTGTACAACATTACATTGCCGAAGAGCATCTGAACATCCACATGGCTAGCATTTTAAGCCCCCTCGGCAAATTCTGGCGCATTGAGCTCGAGAAGGATGAATTGGGCATGTTTTTCAAAGGAGGCTGGTTACAGTTTCTGTCATTCCATGGCATTTCCCCGGGTGATGTTGTGCTCTTGAGGCATGAAGGCAACTTAGTGTTCAAAATCAAAGTGTTTGGGATCAATGGATGCAAGAAAGATTTGAAGACCAAGGACGACATCACAATTCAGCAAAGTGAGCCATCAAATTTGAGTTGCTGACATTTGAATTAATCTGTCCTAAGAACATGCTACCGTTCGATTCTTTTCTGTCTTCTCTACATTTTGCAGGTGCTAGAAACCAACATGAAACACCTTCTTTTTCTACAAGGAAATGTAACAAGAACAGTAGATTTGGCGAAGATTGTAAAAACCAATTACAGGAAATACCTTGCAGTATAAAGGGTAGCAGAAAGAAAGGCAGAGAAACAAAACGGCCGAAAAAATCCAAATCTATCTACGAGATCGGACCACCTTCTTGGATAAAGAAGGAGATCAGCAACTATATGCTGGAAAATGGCAATATTGTAAGTGCTAGTATTAGTTCCTCCCACGCATGATATATATGACGAGCATATTATGAATAAGACAAAAAGTTTGTTTGAAGGAGTTTTAGATTCTAATAAGCAACTGGTGAGTATCTGGAGAAGCTGAGAAAACTAGCTTCTGTCTTTTTCTCAAAATCAGCATTTGATTCTAGTAGGAGCTGTAGCATGCATATAAGCTTCCCCAAATAGGCCCAAAGTAGCTCCACTAAGAATAAGATAAATGCATTTACACTTGCTATGGAGTATTCCTATTGTTCAAGTAGCTATACTCCCCATAGATATCACTCAAGCTCAGCCACCATTATACTAAAATTTTACACTCGCACAAGAATTATTTTCATTCATTACACTGCAAGAACATGTCATGCATCCTAGCTAGATCATGTATAGAATCAGTGTTGCGTTCACATTTCACGCCACTAAAGTGAAAAAAAAAAAGGTTCAGCTGATCAGACTAAACCAATCCACTGTACATCTACAGTCTTTGCCAGGGATCTTCTGCAAGTCGATCGGGCTCGTAGAAGAAACCACCATCACTCTAATGATCAACAGCTCGAGAGGAAGAAGCAGCAGCAGCAGCAGCAGGTCATGGGAGGTGGCTTGTAGTGTAAACAAGAACGGATACGGCTGCTGCAACCTGCTTCCATCCGGCTGGAAGAGGTTCTGCCAGGCGAACGGTCTCCTCGTAGGCGACGTCTGCACCTTCAGCGTCGTCGAGGCCACCCTGTGGCATGTTGCCATCGATCGAGTCGAGCGTAGCTGA
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| CDS seq | CAACGCGCCGCGCACGCCTCATTCCCCTCCTCCGGTAGAAGACGAGGAGCCGAGGCGGCAGCCAGCTCAGCAGTCTCCTCCGCCCTGCCGCCGCCGGCGACCATGCCCGGCGACCATGCCGGCGCCGGCGCCGCCGTCGGCGCAGCGAAGGCCATGCAGCTCAAGGTGCTGATGCCTTCTTCCTTCCACAAGATGCGCATCTCCGACGAGCTCGCCGCGGACCTCCTGGGCGAGCGCGGCGACGGCGGCGGCGGCGGCGGTGGAGCGCCGCGGCGGGCGGCGCGCGTGGTGAGCCCGGTCGGCAAGGTCTGGGACGTCGAGGTCGGCCGGGACGACGACGGCGACGGCGGCGGCGCGTTCCTGGGGCGCGGGTGGGCGGAGTTCGCGGCGGCGCACGGCCTGGGCATGGGGTGGTTCGTGGTGGTCCGGCACGAGGGCGGTGGCGTGCTCACCGTCAAGCTGTTCGACACCACCTGCTGCCTCTGGGACTTCGGCGCTCGCCCTGCAGTTGTGACAACCAGAAGCGGTAGAGCAAGAGACGCGTCACATAAGCCGCAATTCTTGAGGGTACTTCTACCGGGTTTCATGGAAAAGATGAGGATCCCTGCTAAGTTTGTACAACATTACATTGCCGAAGAGCATCTGAACATCCACATGGCTAGCATTTTAAGCCCCCTCGGCAAATTCTGGCGCATTGAGCTCGAGAAGGATGAATTGGGCATGTTTTTCAAAGGAGGCTGGTTACAGTTTCTGTCATTCCATGGCATTTCCCCGGGTGATGTTGTGCTCTTGAGGCATGAAGGCAACTTAGTGTTCAAAATCAAAGTGTTTGGGATCAATGGATGCAAGAAAGATTTGAAGACCAAGGACGACATCACAATTCAGCAAAGTGCTAGAAACCAACATGAAACACCTTCTTTTTCTACAAGGAAATGTAACAAGAACAGTAGATTTGGCGAAGATTGTAAAAACCAATTACAGGAAATACCTTGCAGTATAAAGGGTAGCAGAAAGAAAGGCAGAGAAACAAAACGGCCGAAAAAATCCAAATCTATCTACGAGATCGGACCACCTTCTTGGATAAAGAAGGAGATCAGCAACTATATGCTGGAAAATGGCAATATTTCTTTGCCAGGGATCTTCTGCAAGTCGATCGGGCTCGTAGAAGAAACCACCATCACTCTAATGATCAACAGCTCGAGAGGAAGAAGCAGCAGCAGCAGCAGCAGGTCATGGGAGGTGGCTTGTAGTGTAAACAAGAACGGATACGGCTGCTGCAACCTGCTTCCATCCGGCTGGAAGAGGTTCTGCCAGGCGAACGGTCTCCTCGTAGGCGACGTCTGCACCTTCAGCGTCGTCGAGGCCACCCTGTGGCATGTTGCCATCGATCGAGTCGAGCGTAGCTGA
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| Protein seq | QRAAHASFPSSGRRRGAEAAASSAVSSALPPPATMPGDHAGAGAAVGAAKAMQLKVLMPSSFHKMRISDELAADLLGERGDGGGGGGGAPRRAARVVSPVGKVWDVEVGRDDDGDGGGAFLGRGWAEFAAAHGLGMGWFVVVRHEGGGVLTVKLFDTTCCLWDFGARPAVVTTRSGRARDASHKPQFLRVLLPGFMEKMRIPAKFVQHYIAEEHLNIHMASILSPLGKFWRIELEKDELGMFFKGGWLQFLSFHGISPGDVVLLRHEGNLVFKIKVFGINGCKKDLKTKDDITIQQSARNQHETPSFSTRKCNKNSRFGEDCKNQLQEIPCSIKGSRKKGRETKRPKKSKSIYEIGPPSWIKKEISNYMLENGNISLPGIFCKSIGLVEETTITLMINSSRGRSSSSSSRSWEVACSVNKNGYGCCNLLPSGWKRFCQANGLLVGDVCTFSVVEATLWHVAIDRVERS |
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| Function | Putative B3 domain-containing protein Os04g0347400 [UniProtKB/Swiss-Prot:Q7XS74] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_04G0262100 | OsMH63_04T0262100-mRNA-1 | Chr04 | 17173477 | 17176939 | + | maker | ||
| CDS seq | CAACGCGCCGCGCACGCCTCATTCCCCTCCTCCGGTAGAAGACGAGGAGCCGAGGCGGCAGCCAGCTCAGCAGTCTCCTCCGCCCTGCCGCCGCCGGCGACCATGCCCGGCGACCATGCCGGCGCCGGCGCCGCCGTCGGCGCAGCGAAGGCCATGCAGCTCAAGGTGCTGATGCCTTCTTCCTTCCACAAGATGCGCATCTCCGACGAGCTCGCCGCGGACCTCCTGGGCGAGCGCGGCGACGGCGGCGGCGGCGGCGGTGGAGCGCCGCGGCGGGCGGCGCGCGTGGTGAGCCCGGTCGGCAAGGTCTGGGACGTCGAGGTCGGCCGGGACGACGACGGCGACGGCGGCGGCGCGTTCCTGGGGCGCGGGTGGGCGGAGTTCGCGGCGGCGCACGGCCTGGGCATGGGGTGGTTCGTGGTGGTCCGGCACGAGGGCGGTGGCGTGCTCACCGTCAAGCTGTTCGACACCACCTGCTGCCTCTGGGACTTCGGCGCTCGCCCTGCAGTTGTGACAACCAGAAGCGGTAGAGCAAGAGACGCGTCACATAAGCCGCAATTCTTGAGGGTACTTCTACCGGGTTTCATGGAAAAGATGAGGATCCCTGCTAAGTTTGTACAACATTACATTGCCGAAGAGCATCTGAACATCCACATGGCTAGCATTTTAAGCCCCCTCGGCAAATTCTGGCGCATTGAGCTCGAGAAGGATGAATTGGGCATGTTTTTCAAAGGAGGCTGGTTACAGTTTCTGTCATTCCATGGCATTTCCCCGGGTGATGTTGTGCTCTTGAGGCATGAAGGCAACTTAGTGTTCAAAATCAAAGTGTTTGGGATCAATGGATGCAAGAAAGATTTGAAGACCAAGGACGACATCACAATTCAGCAAAGTGCTAGAAACCAACATGAAACACCTTCTTTTTCTACAAGGAAATGTAACAAGAACAGTAGATTTGGCGAAGATTGTAAAAACCAATTACAGGAAATACCTTGCAGTATAAAGGGTAGCAGAAAGAAAGGCAGAGAAACAAAACGGCCGAAAAAATCCAAATCTATCTACGAGATCGGACCACCTTCTTGGATAAAGAAGGAGATCAGCAACTATATGCTGGAAAATGGCAATATTTCTTTGCCAGGGATCTTCTGCAAGTCGATCGGGCTCGTAGAAGAAACCACCATCACTCTAATGATCAACAGCTCGAGAGGAAGAAGCAGCAGCAGCAGCAGCAGGTCATGGGAGGTGGCTTGTAGTGTAAACAAGAACGGATACGGCTGCTGCAACCTGCTTCCATCCGGCTGGAAGAGGTTCTGCCAGGCGAACGGTCTCCTCGTAGGCGACGTCTGCACCTTCAGCGTCGTCGAGGCCACCCTGTGGCATGTTGCCATCGATCGAGTCGAGCGTAGCTGA
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| Protein seq | QRAAHASFPSSGRRRGAEAAASSAVSSALPPPATMPGDHAGAGAAVGAAKAMQLKVLMPSSFHKMRISDELAADLLGERGDGGGGGGGAPRRAARVVSPVGKVWDVEVGRDDDGDGGGAFLGRGWAEFAAAHGLGMGWFVVVRHEGGGVLTVKLFDTTCCLWDFGARPAVVTTRSGRARDASHKPQFLRVLLPGFMEKMRIPAKFVQHYIAEEHLNIHMASILSPLGKFWRIELEKDELGMFFKGGWLQFLSFHGISPGDVVLLRHEGNLVFKIKVFGINGCKKDLKTKDDITIQQSARNQHETPSFSTRKCNKNSRFGEDCKNQLQEIPCSIKGSRKKGRETKRPKKSKSIYEIGPPSWIKKEISNYMLENGNISLPGIFCKSIGLVEETTITLMINSSRGRSSSSSSRSWEVACSVNKNGYGCCNLLPSGWKRFCQANGLLVGDVCTFSVVEATLWHVAIDRVERS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0148945 | 0.192561 | 0.0388365 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0347400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g28000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0347400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008990 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0009740 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009510 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009190 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009350 | RBH | 0.000000 | 0.0 | 0.876558 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0261800 | RBH | 0.029517 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008460 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0258200 | RBH | 0.0407375 | 0.1192835 | 0.0412725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0008910 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008660 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008710 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0009130 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009370 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008440 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008530 | RBH | 0.0 | 0.0 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | R9311C04g15525 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_04g0133400 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_04g0128900 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_04g0119700 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_04g0129300 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0406694700.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0415399700.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_015422 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0413002300.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0414762300.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0407485700.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0407977300.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0410428900.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0407456100.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0407437100.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0406615100.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0407491700.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0414541300.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0408236100.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0408079500.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0408667500.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0406688700.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0406671900.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0407953300.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0408219300.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0407935700.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0418790300.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0410628100.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0406600500.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0406627700.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0407733700.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0407393700.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0411247100.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0407225800.01 | RBH | None | None | None |
