Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_04G0261800 | OGI:04052750 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr04:17148837-17152613 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | ZH11_MH63RS3_DEL0441910,DHX2_MH63RS3_DEL0440840,Kosh_MH63RS3_DEL0441420,TM_MH63RS3_DEL0424760,117534_MH63RS3_DEL0434440,G630_MH63RS3_DEL0425830,OglaRS2_MH63RS3_DEL0437910,Nipponbare_MH63RS3_DEL0440810,
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| DNA seq | TCAGCAACGCTCGATGTCGACGCGCCACAGGGTGGTGTCGAGGACGGTGAAGACGCAGACGTCGCCGGACCTGACGCCGTTGTCCTCGCAGAACCTCCTCCAGCCGGCTCCCAGCAGGTAGCAGGCGTCCTTGTACCGACGCCCGGTCACCTCCCATGATCTGCTGCTGCTGCTGCTTCCTCCTTGATCTCCTTGCGTTGATGTCGTGTCGACCATCATCAGCGTGATGCTGCTCTCCTCTGCGAGCCCGATCGACTCGCAGAAGGTCCTTGCGAGAGACTGCATGAATGCAGGCATTGCAGAGATGATTCATATAACTGATGGTTTCAGATGAATTTATGATTGGGGCCAGTTCTAATTGAAGGAGTTGGTCATGTCATCTGGATTATTGACGCGGATTATTTGTTTACACTTTGCTTCAAAAAGATTCAAGTTATGTAAGAATTTTTTACTCGGTGCTGTTTGGGCCACTTGTTCTTCTGAATATCATTTGTTGTCATTAAATTAAATCTAAAAAATAGTTATGAAAAGTTAAAAAATATTTGATATTGATACAATTATATTTTTAACTTTTCATAACTATTTTTTAGATTTAATTTCCATCTAGGGATGAAGACTTTTTCCTTGTAACAACAACATGATAATATCAGGAGAGGAATAGTTGTGCTTACGAGAATGCATCTTTCAAGAACATATTCATTGATCTCCTTCTTTATCCAAGAGCGCGGTCCAATCTCGTAGACAGATCTGGTTTTTCTCATCCTTTTTGTTTCTCTGTCACTTGTTCTCCCTTTGTTGCCGCTGCCCTTTCTACTGCAAGGCATTTCCTGTTGGTTTCCATCATCTTCACCAAATCTACTCTTCTTCTTGTTATTACATTTCCTTCTAGAAAAAGAAGGTGCTTCCTGTTGCTCTCCAGTACCTGTAAATGTTGCGAAGACAGAAAAAATGAATCAAATGACAACATATTTCCAAGACATAATTCAAAACACAAACTATAACTGATGGGGATTCGAATACGAAAAACAAAATTGCTTGCTCACCTTGATGAATGCTGATGCCCTTTGCCTTGAAATCTTTCTGGCGTCCATTGGGCCCAAAAACACTGATTTTGAACACCAGGTTTCCCTCATACCTGAAGATCACGACGTCGCCCCGAGAGATACCATGGAATGACAAGAGTTGTAGCCATCCACCCCCTAAAAACACGCCCGATTGATCCTTGTCGAGCTCGACGCGCCAAGATTTGCCGAGGGGACTTAAGATGATAGCCATGTTGCTGTTCAGGTTCTCTCCAGTGATGTAGTCTCGTACAAACTTATCAGGGATCCTCTGTAGGAAAGGCAGTGAAATGTGCATCGTTCATGATACATCTCAACTCTAAAATATTCAGAAAGGCATTTTGTTCGTGCCACTAATTAGCTAGATAGCTGATATTATCGCTCTTTTAAAGAATAAATAATATTTTTGTCACTAAATATATGGATTATTTCCCTCTGTTTTAGCCAGTGAAGTGTATCATTGACATGTGGGCCATTGTGAATTGCACCATGATGAAATAGAAAGAGGAACGTTAAGGAGGCTAAAAGATGGATGACAAAATTGACAGGGCTGTCAATTACTATAAACTAGAGGAATAAGTGATAATTTTAGGCTTTTTTTAATGTCACAAACAAAATATTACTTAGGTAGTACTGCCTCCTATCATGAAACATGCATGTTTTGAATAGTCCCACATTGATTGTGTAAGGATAAGAGACCTAATATATAAATGGGGGAACCCCTCACCTCAATGACTAGCTTTTGGGGTGGGAAAGACCATTTACGATCCTACACCATGTTGGTTTCTAGACATGTTTCCAGTCATCTTAAAAAACCTTTAAATACAATATCGTTTTCAATTTTTGATTGGATAATTACAAATTAGGCATATAGATTTGTCCCTAAAAAATATTTTCACAACAGTATCATTGTATTAAGTTCTTAAAACGCTTTGTATCAGAAATTAGCAGTAAATATTTGCATATTGAAAAATGTACCGATGTCCAAAACAATTTGTTCTTTGTGACAGGAAAGAGTAGCACAATAAATACTAATAGAAGCAAAAGAAAGTGACTGGGATCGATGAGTTTGTGTACCATCTTGTCCATTATACCCGGCAGAAGTACCGTCAAGAACTGCGGCTTACGTGAAGTGTCTGTTGCCCTGCCCGCTTCTGAATGTCATAGCTAAAAGAAGACGTTATTTACAACTCAAAATTAAAACTGAAACTAGAAGATTATGGCAGACCAATGGTGGTAAAAGAGCAATTAATAAGAGATATTATAGGCCCAATTTCAGAATATATATTGTTCGAATTGCTGTAGTGGATTATGTAAATCGATACAAATTAAATATCTTAACAAATAAACTTAAACCATTCATCGTATTAAAAGAATTAGTTTAAATATGTAAAAGTATATAAGCTCAGGTTAGAGGTTTATTTGAAGATAAAATAAGTCACAACAATGCAAATGAATTTATAAAAATTTTTTAATAAGATGAATAGTAAAATGTTATCTGAAAAGTCAATGGTGCTATATATTAAAAATATAGTACATTTTTTTGAGAAATTTTTTTAAGGCATGGAGCACATAATCCACATCATTAATAATATAGTGTATTGAGTTACATGCACCGACTAATTTAATAAAAAAAACCTTAAGCTGATGAGAAAAGTCGAGCAATTCACTTCATATTCTAACACTCCCCACCATGCGAGACAGCCTCAAGCCTCAAGCACGAAACAGAAGTGGGCTACAATTTACAGGATTTGAACCAATCTAAAACTTAAATTGACGAGAAAAGACGAACAATTGATTTTATATTCCAATAGGTAAAATAGCTAAAAAGAATATGGCCTAAAGCCCTAAACAATTAATGCAATCTAATCATCTTGTTATATACTTTCTTTCGGAAAAAAGAGAGAACATCTTGCAAGTAGAATACCAAAGTTCAATTTGATTAACTACTCCATCTCTGAAGTAGCCATTCAAATTAAGTACAAAGTTTATACAGCAATTCAAATTTTAACTTTGGCACCATGAAGAAAGCATCATCCAAGACAAATAAATTTTTTGCAAGCAAAATCCCTTGGATTACCTGCAGGGGGAGCGCCGAACACCCTGAGGCAGCAGGTGGTGTCGAACGCCTCGACGGCGAGCACGCCGCCGCCGCCGCCGCCGCCGTGGCGGAGCACCACGAACCACCCCACGCCGAGGCCGTGCGCGGCGGCGAACTCCGCCCACCCGCGCCCCAGGAACGCTCGGCCGTCGCCGTCCCGGACGACCCCGACGTCCCAGGCCTTGCCGAGCGGGCTCGCCACGCGCGCCGTCGCCGCCCGTGGCGCGCCGCCGCCGCCGACGCCGACGCCCAGCTGCGCCGCGAGCTCGTCGCAGATGCGCTGCATTCACAGAGACATGAGCCACCCACGAGAGTAGGGCGCCGCGGCCGGGGCGTGCCGCAGGCGCGCGCCGCGCGGCGCGCCATGGAAGCAATAAAGAAAGAAGGTGGCAATGGCATGGCGACATGGCGTGGCGTGGCGTGGCGGCTTCTGCTTACCATCTTGCGGAAGGAAGAAGGCACGAGAACCTTGAGCTGCGTCGCCCTCGCCGCGCCGCGGCCGCCGCCGCCGCCGCCATGGTCACCGCGCGATCCCATGGCGGCCGCCGGCGAGACGACGACGCGAGGAGCCTTTTCTGCGGGGCGGTGGTGCTGCGAAGAATCAGGTGTGATCAT
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| CDS seq | ATGATCACACCTGATTCTTCGCAGCACCACCGCCCCGCAGAAAAGGCTCCTCGCGTCGTCGTCTCGCCGGCGGCCGCCATGGGATCGCGCGGTGACCATGGCGGCGGCGGCGGCGGCCGCGGCGCGGCGAGGGCGACGCAGCTCAAGGTTCTCGTGCCTTCTTCCTTCCGCAAGATGCGCATCTGCGACGAGCTCGCGGCGCAGCTGGGCGTCGGCGTCGGCGGCGGCGGCGCGCCACGGGCGGCGACGGCGCGCGTGGCGAGCCCGCTCGGCAAGGCCTGGGACGTCGGGGTCGTCCGGGACGGCGACGGCCGAGCGTTCCTGGGGCGCGGGTGGGCGGAGTTCGCCGCCGCGCACGGCCTCGGCGTGGGGTGGTTCGTGGTGCTCCGCCACGGCGGCGGCGGCGGCGGCGGCGTGCTCGCCGTCGAGGCGTTCGACACCACCTGCTGCCTCAGGGTGTTCGGCGCTCCCCCTGCAGAAGCGGGCAGGGCAACAGACACTTCACGTAAGCCGCAGTTCTTGACGGTACTTCTGCCGGGTATAATGGACAAGATGAGGATCCCTGATAAGTTTGTACGAGACTACATCACTGGAGAGAACCTGAACAGCAACATGGCTATCATCTTAAGTCCCCTCGGCAAATCTTGGCGCGTCGAGCTCGACAAGGATCAATCGGGCGTGTTTTTAGGGGGTGGATGGCTACAACTCTTGTCATTCCATGGTATCTCTCGGGGCGACGTCGTGATCTTCAGGTATGAGGGAAACCTGGTGTTCAAAATCAGTGTTTTTGGGCCCAATGGACGCCAGAAAGATTTCAAGGCAAAGGGCATCAGCATTCATCAAGGTACTGGAGAGCAACAGGAAGCACCTTCTTTTTCTAGAAGGAAATGTAATAACAAGAAGAAGAGTAGATTTGGTGAAGATGATGGAAACCAACAGGAAATGCCTTGCAGTAGAAAGGGCAGCGGCAACAAAGGGAGAACAAGTGACAGAGAAACAAAAAGGATGAGAAAAACCAGATCTGTCTACGAGATTGGACCGCGCTCTTGGATAAAGAAGGAGATCAATGAATATGTTCTTGAAAGATGCATTCTCTCTCTCGCAAGGACCTTCTGCGAGTCGATCGGGCTCGCAGAGGAGAGCAGCATCACGCTGATGATGGTCGACACGACATCAACGCAAGGAGATCAAGGAGGAAGCAGCAGCAGCAGCAGATCATGGGAGGTGACCGGGCGTCGGTACAAGGACGCCTGCTACCTGCTGGGAGCCGGCTGGAGGAGGTTCTGCGAGGACAACGGCGTCAGGTCCGGCGACGTCTGCGTCTTCACCGTCCTCGACACCACCCTGTGGCGCGTCGACATCGAGCGTTGCTGA
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| Protein seq | MITPDSSQHHRPAEKAPRVVVSPAAAMGSRGDHGGGGGGRGAARATQLKVLVPSSFRKMRICDELAAQLGVGVGGGGAPRAATARVASPLGKAWDVGVVRDGDGRAFLGRGWAEFAAAHGLGVGWFVVLRHGGGGGGGVLAVEAFDTTCCLRVFGAPPAEAGRATDTSRKPQFLTVLLPGIMDKMRIPDKFVRDYITGENLNSNMAIILSPLGKSWRVELDKDQSGVFLGGGWLQLLSFHGISRGDVVIFRYEGNLVFKISVFGPNGRQKDFKAKGISIHQGTGEQQEAPSFSRRKCNNKKKSRFGEDDGNQQEMPCSRKGSGNKGRTSDRETKRMRKTRSVYEIGPRSWIKKEINEYVLERCILSLARTFCESIGLAEESSITLMMVDTTSTQGDQGGSSSSSRSWEVTGRRYKDACYLLGAGWRRFCEDNGVRSGDVCVFTVLDTTLWRVDIERC |
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| Function | Putative B3 domain-containing protein Os04g0346900 [UniProtKB/Swiss-Prot:Q7XS75] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_04G0261800 | OsMH63_04T0261800-mRNA-1 | Chr04 | 17148837 | 17152613 | - | maker | ||
| CDS seq | ATGATCACACCTGATTCTTCGCAGCACCACCGCCCCGCAGAAAAGGCTCCTCGCGTCGTCGTCTCGCCGGCGGCCGCCATGGGATCGCGCGGTGACCATGGCGGCGGCGGCGGCGGCCGCGGCGCGGCGAGGGCGACGCAGCTCAAGGTTCTCGTGCCTTCTTCCTTCCGCAAGATGCGCATCTGCGACGAGCTCGCGGCGCAGCTGGGCGTCGGCGTCGGCGGCGGCGGCGCGCCACGGGCGGCGACGGCGCGCGTGGCGAGCCCGCTCGGCAAGGCCTGGGACGTCGGGGTCGTCCGGGACGGCGACGGCCGAGCGTTCCTGGGGCGCGGGTGGGCGGAGTTCGCCGCCGCGCACGGCCTCGGCGTGGGGTGGTTCGTGGTGCTCCGCCACGGCGGCGGCGGCGGCGGCGGCGTGCTCGCCGTCGAGGCGTTCGACACCACCTGCTGCCTCAGGGTGTTCGGCGCTCCCCCTGCAGAAGCGGGCAGGGCAACAGACACTTCACGTAAGCCGCAGTTCTTGACGGTACTTCTGCCGGGTATAATGGACAAGATGAGGATCCCTGATAAGTTTGTACGAGACTACATCACTGGAGAGAACCTGAACAGCAACATGGCTATCATCTTAAGTCCCCTCGGCAAATCTTGGCGCGTCGAGCTCGACAAGGATCAATCGGGCGTGTTTTTAGGGGGTGGATGGCTACAACTCTTGTCATTCCATGGTATCTCTCGGGGCGACGTCGTGATCTTCAGGTATGAGGGAAACCTGGTGTTCAAAATCAGTGTTTTTGGGCCCAATGGACGCCAGAAAGATTTCAAGGCAAAGGGCATCAGCATTCATCAAGGTACTGGAGAGCAACAGGAAGCACCTTCTTTTTCTAGAAGGAAATGTAATAACAAGAAGAAGAGTAGATTTGGTGAAGATGATGGAAACCAACAGGAAATGCCTTGCAGTAGAAAGGGCAGCGGCAACAAAGGGAGAACAAGTGACAGAGAAACAAAAAGGATGAGAAAAACCAGATCTGTCTACGAGATTGGACCGCGCTCTTGGATAAAGAAGGAGATCAATGAATATGTTCTTGAAAGATGCATTCTCTCTCTCGCAAGGACCTTCTGCGAGTCGATCGGGCTCGCAGAGGAGAGCAGCATCACGCTGATGATGGTCGACACGACATCAACGCAAGGAGATCAAGGAGGAAGCAGCAGCAGCAGCAGATCATGGGAGGTGACCGGGCGTCGGTACAAGGACGCCTGCTACCTGCTGGGAGCCGGCTGGAGGAGGTTCTGCGAGGACAACGGCGTCAGGTCCGGCGACGTCTGCGTCTTCACCGTCCTCGACACCACCCTGTGGCGCGTCGACATCGAGCGTTGCTGA
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| Protein seq | MITPDSSQHHRPAEKAPRVVVSPAAAMGSRGDHGGGGGGRGAARATQLKVLVPSSFRKMRICDELAAQLGVGVGGGGAPRAATARVASPLGKAWDVGVVRDGDGRAFLGRGWAEFAAAHGLGVGWFVVLRHGGGGGGGVLAVEAFDTTCCLRVFGAPPAEAGRATDTSRKPQFLTVLLPGIMDKMRIPDKFVRDYITGENLNSNMAIILSPLGKSWRVELDKDQSGVFLGGGWLQLLSFHGISRGDVVIFRYEGNLVFKISVFGPNGRQKDFKAKGISIHQGTGEQQEAPSFSRRKCNNKKKSRFGEDDGNQQEMPCSRKGSGNKGRTSDRETKRMRKTRSVYEIGPRSWIKKEINEYVLERCILSLARTFCESIGLAEESSITLMMVDTTSTQGDQGGSSSSSRSWEVTGRRYKDACYLLGAGWRRFCEDNGVRSGDVCVFTVLDTTLWRVDIERC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.029517 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0346900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g27960 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0346900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008970 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0009720 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009490 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009170 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009330 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0262100 | RBH | 0.0148945 | 0.192561 | 0.0388365 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008440 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0258000 | RBH | 0.0117575 | 0.0132945 | 0.033068 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0008890 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008640 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008690 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0009110 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009350 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008420 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008510 | RBH | 0.0 | 0.0 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | R9311C04g15523 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_04g0133200 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_04g0128700 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_04g0119500 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_04g0129100 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0406693200.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0415397400.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_015420 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0412999000.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0414758800.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0407484200.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0407973800.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0410425600.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0407454600.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0407435600.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0406613800.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0407488800.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0414538000.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0408233000.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0408075800.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0408665200.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0406687200.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0406670600.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0407950000.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0408217400.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0407934000.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0418785600.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0410624200.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0406599000.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0406626200.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0407730200.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0407390600.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0411243800.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0407227100.01 | RBH | None | None | None |
