Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_04G0216900 | OGI:04044920 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr04:14065206-14068683 | ||||||||
| Gene Symbol | OsbHLH006,OsbHLH6,bHLH6,bHLH006,bHLH35,BHLH6,OsRERJ1,OsOsbHLH006,RERJ1 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | TTAAGCGCAAGAAAGCTTGAGACGGAGGTGGACTTGTTGCTGGCTGCACGTGAGGTTCGACTCCCCCGATGTTGCAGCCACCTCCGCACTAGCTCTGACATTGGCCGCTAGCTTCAATGACCCAATCGGCACCATCCTCATCAGCGAGGACGATGACTCCTGCATGAAGCGCACCCCTGTCCCGGTTGCTCCCACCTCAACTCGAGTTGACGGTGGCATCGGTGTATGCGCCGCCACTGCCTTCAAAGAGAGCCGGGGAGGGAGATTGGCTTAAGGGAGATAGATGACAAGTGGGTCCATATTTATTTTCTTTGTTGATTGGCTTGTCATGTTGATTTCACGCGTGTAAGTTCTTGATCAAAATCGCCCAAAACAACGACAGAGGGTAATTTATTCAGTATGAATAATTGAGAGCGTAAAAGTCTGGTATTTGAGTTCAAAGGGTAATTCGTGTTAGAATATATAAGCACATGTAGATTTAATTTATTCCATAAATAAATCATGACATTGAACATGTATACTGCATAATCGCATCATACGATCTATGCATGTAAACTAGACAGAGCAGACCGAATATACAAAACATGATGAATGCGTACCGAGGGTTTTGGAGCTGCTCAGCAGGACAAATTCACGGTACCGGACATGTATACTAGCATAATCGCATCATACGATCTATACATGTAAACTAGCCAGAGCAGATCGAATATACAAAACATGATGAATGCGTACCGAGGGTTCTGCAGCAGGAAGAATTCACAGTATCGGACATTGACGACGGCGCCGTGGTCGACAAATAGCAAGCAGTCATGTGAAGCACTTCCACACCCTGTAACCGAACCGAATAAGTCATGCGTAACTTATCTGGACTCCATCGCGGCCTAGCCAGGCGAGACGAGCGAGCGCGTGTGTGTTTCTCTTGTTCTCTTCACCACACGTGTCTCAAGTGGCTAGGAGAGCACCCTCTTCTATAAGGAGATCTACATCTCCTATAACAGACAAGGTGGTACTAAGCATCCTATGCACACCATCCCGTGATGTGTGCTTTTGTGATTTTCTAAAGAATTAATTTGCAAATAGTATAAGACTCATTTATTATTTCGAACAATTCGCACTCACCCAATAGTTCATTCAGAGAGGTAATTCACACATTTTCGTTTTCATTAAGCTGGACCACCTTATTATTCATCAATATTAATAGCTACATACACAAGTCAGCGTACTCAAGATTTCCAAAATACTTAAACCTATCATCCAGCCACTAGATCGTTGCCTCGCAAGAAAACAACCACCTCCATCACGTAGTGGGGTGTCGCAAAAATGACAACAACAACATCACCAAGCATACATAAAAATGCGCTTTATTGCGAATGAGACTAGGTAAAGTAGGTGGCCAAAACGCATGACTCCATATATCTATCCAGCTCATAACTAATAGCTCAACGGACTGCCGGTCGCCACAAGCTGGGAGAGAGCAGCCTCCACCATCTGCTTCATTTGGACACTATCCATGTGATCTACCTGAAATTTGAAACAACTTTATTCAGCCAAAACCCCAAAATTAACAATGCTAAGGTTTTGTTCTTTTGAAGAGGTTGCGAACCTCTTCCCTCCGCACGTAAAATAGAGTAATGGATTAACACATGATTAATTAAATATATTTTAAAAATCTTAAAAATATATTATTATGATTTATTTAAAACAATTTTTTCTTTTAAAAATTTAATAGTTCAAGAAACATGCACGTGGAAGTCAACAAACTAACTCAGCCTCAATCCCAAAAAAAAAAAAAAAAACTAACTCAGCCTCAATAATGTGTATCAAACACCTAATTTCTAGAAGAGGACAAAACACAGAACATCCCCAAAAACTGTTGTCTTCACGTCTGTAATCAAATCAGCTTAAAGAAAAGTGTGGAATTTAACGTCACAACAAATAAAAAAACGAGGGGAAAAAAATCATCACCCGTGCAATCGAACACATGCCAATCGTTTTCCATGGCTTCCCCCCAACCAAAACACGCACGTGATGTGACGCCCATGTAGCTGTGCTCCCGTTTGTCCCCCCAAAAAATTAATTCATTAATTATTATCTGAAGCACGTGCGCGATCCATCCATCCATCGAATTGTTCGATTTCTCCCTCGTGCGCACCCGATTAATCCCATGTGGTTTTCAATCGCTTTTTGCAATCGAAGAACAGAAGAAGAAGAATCAGGTGGATTCGTAAAGCGGGGAGAAGGGGATTTTCTGATGCTTTGAGATTCGGGACGGTTGCTTTAGGATTGGTGAGGATTTGATTGGCCTAACATACTGACGCCGCAAAGGGAGCAGCGTGTGATCGCAACGTTATTTTTCTACCTAAAAATGGAAGTAAAATGTAGTACTGCGTGTGAACGGTCAAAGTCAAACTTGGAAGGTCAAACCTAAGGAAAGGAAGAGGAGCTCAGTGACCGTGCGTGACGTCAGCAATGGAGATGGAGATTGTATTATACCTCGACGAAGAGGGTGTGCATGAGGCAGCCGGCGACGGAGGTGATGTTGGCGGTGATGACGCGGAGGCGGAGCTCCTCGAGGGCGCGGCACACCCGGGCCATGGCGTCGCGGCGCTTGCTGCACGTCACGCTCACCACCAGCACCCTGTCGCCCACCTCCGACACGCGCAGCTCCTGGATCTCCACCGGCGGCGCCGGCGCCGCCGCGGCGAGCAGGGCGTCGCTGATGGACGACACGGACAGCGCCCGCTTCACCTTCTTCGTCCGCTCCGACGACGACGAGGGGTGGTGGTGGCCGTACTCGTGTTCCTCGTCGGCGCCGAGGCCGGCGAACGGGTTCGCCGCGGCCGGGGCGGCGCTCGCCGCGGCGGTGGACTCGAGCGCGGCGACCTCCCGGAGCATCTGCTGCTCCTCCGCCTGCAGGCGCTGGATGTACTCGATCGCGTCCTTGATGATCGACGCCTTGTCCATCTGCGCCCAACCACCGACGAGCAGTCAGTCAGCAATGTCGCCGTCGCCGCCATGGACGAACACCTCTACTCCTCTCTCCCTTACCTTGGTGATGTTAGGCACGACACTGCGGAGCGCGTAGAGCTTCTCGTTGAGCTTGCGGCGGCGGTCGCGCTCCATGAGGATGTTCTTGTTCGCGCCACCGGCGTCGTCGCCACCGCCGCCGCCGCCGCCCATCATCATCGTCATCATCCCGCCACCGCTACCCGCCACCGCGGCGGCGGCGTCCCCGCCCACGGCCGCCGGCGCCGGCGCCGACGACGAGTGCGATCCGTCCGGCGAGCTCGACTCGTAGTTGGAGTCATCCTGCGTCGGCAGGTACATGCTGCAACCAAACACCATGTCAGCAACAACAATGGCGGATCGGCGGCGGCGGCGAGGCGGAGGCGCACCTGTCGAGCTCCTCGGACTCGAGGTAGCGCTGCGTCTCCCAGTAGTAGGCGAAGCTCTCGCCCATGGCCATCTCGGCGTCCAT
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| CDS seq | ATGGACGCCGAGATGGCCATGGGCGAGAGCTTCGCCTACTACTGGGAGACGCAGCGCTACCTCGAGTCCGAGGAGCTCGACAGCATGTACCTGCCGACGCAGGATGACTCCAACTACGAGTCGAGCTCGCCGGACGGATCGCACTCGTCGTCGGCGCCGGCGCCGGCGGCCGTGGGCGGGGACGCCGCCGCCGCGGTGGCGGGTAGCGGTGGCGGGATGATGACGATGATGATGGGCGGCGGCGGCGGCGGTGGCGACGACGCCGGTGGCGCGAACAAGAACATCCTCATGGAGCGCGACCGCCGCCGCAAGCTCAACGAGAAGCTCTACGCGCTCCGCAGTGTCGTGCCTAACATCACCAAGATGGACAAGGCGTCGATCATCAAGGACGCGATCGAGTACATCCAGCGCCTGCAGGCGGAGGAGCAGCAGATGCTCCGGGAGGTCGCCGCGCTCGAGTCCACCGCCGCGGCGAGCGCCGCCCCGGCCGCGGCGAACCCGTTCGCCGGCCTCGGCGCCGACGAGGAACACGAGTACGGCCACCACCACCCCTCGTCGTCGTCGGAGCGGACGAAGAAGGTGAAGCGGGCGCTGTCCGTGTCGTCCATCAGCGACGCCCTGCTCGCCGCGGCGGCGCCGGCGCCGCCGGTGGAGATCCAGGAGCTGCGCGTGTCGGAGGTGGGCGACAGGGTGCTGGTGGTGAGCGTGACGTGCAGCAAGCGCCGCGACGCCATGGCCCGGGTGTGCCGCGCCCTCGAGGAGCTCCGCCTCCGCGTCATCACCGCCAACATCACCTCCGTCGCCGGCTGCCTCATGCACACCCTCTTCGTCGAGGTAGATCACATGGATAGTGTCCAAATGAAGCAGATGGTGGAGGCTGCTCTCTCCCAGCTTGTGGCGACCGGCAGGTGTGGAAGTGCTTCACATGACTGCTTGCTATTTGTCGACCACGGCGCCGTCGTCAATGTCCGATACTGTGAATTCTTCCTGCTGCAGAACCCTCGTATACATGTCCGGTACCGTGAATTTGTCCTGCTGAGCAGCTCCAAAACCCTCGCCAATCTCCCTCCCCGGCTCTCTTTGAAGGCAGTGGCGGCGCATACACCGATGCCACCGTCAACTCGAGTTGAGGTGGGAGCAACCGGGACAGGGGTGCGCTTCATGCAGGAGTCATCGTCCTCGCTGATGAGGATGGTGCCGATTGGGTCATTGAAGCTAGCGGCCAATGTCAGAGCTAGTGCGGAGGTGGCTGCAACATCGGGGGAGTCGAACCTCACGTGCAGCCAGCAACAAGTCCACCTCCGTCTCAAGCTTTCTTGCGCTTAA
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| Protein seq | MDAEMAMGESFAYYWETQRYLESEELDSMYLPTQDDSNYESSSPDGSHSSSAPAPAAVGGDAAAAVAGSGGGMMTMMMGGGGGGGDDAGGANKNILMERDRRRKLNEKLYALRSVVPNITKMDKASIIKDAIEYIQRLQAEEQQMLREVAALESTAAASAAPAAANPFAGLGADEEHEYGHHHPSSSSERTKKVKRALSVSSISDALLAAAAPAPPVEIQELRVSEVGDRVLVVSVTCSKRRDAMARVCRALEELRLRVITANITSVAGCLMHTLFVEVDHMDSVQMKQMVEAALSQLVATGRCGSASHDCLLFVDHGAVVNVRYCEFFLLQNPRIHVRYREFVLLSSSKTLANLPPRLSLKAVAAHTPMPPSTRVEVGATGTGVRFMQESSSSLMRMVPIGSLKLAANVRASAEVAATSGESNLTCSQQQVHLRLKLSCA |
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| Function | Transcription factor bHLH35 [UniProtKB/Swiss-Prot:Q2HIV9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_04G0216900 | OsMH63_04T0216900.1 | Chr04 | 14065206 | 14068683 | - | maker | ||
| CDS seq | ATGGACGCCGAGATGGCCATGGGCGAGAGCTTCGCCTACTACTGGGAGACGCAGCGCTACCTCGAGTCCGAGGAGCTCGACAGCATGTACCTGCCGACGCAGGATGACTCCAACTACGAGTCGAGCTCGCCGGACGGATCGCACTCGTCGTCGGCGCCGGCGCCGGCGGCCGTGGGCGGGGACGCCGCCGCCGCGGTGGCGGGTAGCGGTGGCGGGATGATGACGATGATGATGGGCGGCGGCGGCGGCGGTGGCGACGACGCCGGTGGCGCGAACAAGAACATCCTCATGGAGCGCGACCGCCGCCGCAAGCTCAACGAGAAGCTCTACGCGCTCCGCAGTGTCGTGCCTAACATCACCAAGATGGACAAGGCGTCGATCATCAAGGACGCGATCGAGTACATCCAGCGCCTGCAGGCGGAGGAGCAGCAGATGCTCCGGGAGGTCGCCGCGCTCGAGTCCACCGCCGCGGCGAGCGCCGCCCCGGCCGCGGCGAACCCGTTCGCCGGCCTCGGCGCCGACGAGGAACACGAGTACGGCCACCACCACCCCTCGTCGTCGTCGGAGCGGACGAAGAAGGTGAAGCGGGCGCTGTCCGTGTCGTCCATCAGCGACGCCCTGCTCGCCGCGGCGGCGCCGGCGCCGCCGGTGGAGATCCAGGAGCTGCGCGTGTCGGAGGTGGGCGACAGGGTGCTGGTGGTGAGCGTGACGTGCAGCAAGCGCCGCGACGCCATGGCCCGGGTGTGCCGCGCCCTCGAGGAGCTCCGCCTCCGCGTCATCACCGCCAACATCACCTCCGTCGCCGGCTGCCTCATGCACACCCTCTTCGTCGAGGTAGATCACATGGATAGTGTCCAAATGAAGCAGATGGTGGAGGCTGCTCTCTCCCAGCTTGTGGCGACCGGCAGGTGTGGAAGTGCTTCACATGACTGCTTGCTATTTGTCGACCACGGCGCCGTCGTCAATGTCCGATACTGTGAATTCTTCCTGCTGCAGAACCCTCGTATACATGTCCGGTACCGTGAATTTGTCCTGCTGAGCAGCTCCAAAACCCTCGCCAATCTCCCTCCCCGGCTCTCTTTGAAGGCAGTGGCGGCGCATACACCGATGCCACCGTCAACTCGAGTTGAGGTGGGAGCAACCGGGACAGGGGTGCGCTTCATGCAGGAGTCATCGTCCTCGCTGATGAGGATGGTGCCGATTGGGTCATTGAAGCTAGCGGCCAATGTCAGAGCTAGTGCGGAGGTGGCTGCAACATCGGGGGAGTCGAACCTCACGTGCAGCCAGCAACAAGTCCACCTCCGTCTCAAGCTTTCTTGCGCTTAA
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| Protein seq | MDAEMAMGESFAYYWETQRYLESEELDSMYLPTQDDSNYESSSPDGSHSSSAPAPAAVGGDAAAAVAGSGGGMMTMMMGGGGGGGDDAGGANKNILMERDRRRKLNEKLYALRSVVPNITKMDKASIIKDAIEYIQRLQAEEQQMLREVAALESTAAASAAPAAANPFAGLGADEEHEYGHHHPSSSSERTKKVKRALSVSSISDALLAAAAPAPPVEIQELRVSEVGDRVLVVSVTCSKRRDAMARVCRALEELRLRVITANITSVAGCLMHTLFVEVDHMDSVQMKQMVEAALSQLVATGRCGSASHDCLLFVDHGAVVNVRYCEFFLLQNPRIHVRYREFVLLSSSKTLANLPPRLSLKAVAAHTPMPPSTRVEVGATGTGVRFMQESSSSLMRMVPIGSLKLAANVRASAEVAATSGESNLTCSQQQVHLRLKLSCA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.143691 | 151.2041855 | 4.2609285 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0301500 | RBH | 0.373723 | 0.0 | 0.371247 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g23550 | RBH | 0.678494 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0301500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0007100 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0007730 | RBH | 0.0 | 0.0 | 0.365344 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0007480 | RBH | 0.322224 | 0.0 | 2.659605 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0007190 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007370 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007130 | RBH | 0.111986 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0218700 | RBH | 3.4853035 | 101.1582715 | 0.424705 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0006920 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0007200 | RBH | 0.140525 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0007280 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0020130 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007430 | RBH | 0.188682 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007100 | RBH | 0.000000 | 0.0 | 0.232642 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007170 | RBH | 0.0 | 0.0 | 1.511777 |
| Os XI: R9311 | R9311 | AGIS | R9311C04g15350 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_04g0108400 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_04g0105900 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_04g0098100 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_04g0105800 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0406540600.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0415093800.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_015241 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0412614400.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0414363800.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0407313400.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0407680000.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0409997200.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0407276800.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0407287800.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0406457600.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0407101400.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0414130000.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0407765000.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0407778200.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0408251400.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0406536200.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0406510000.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0407531000.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0407993000.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0407658600.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0418179800.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0410230600.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0406445800.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0406465800.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0407399800.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0407069400.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0410850000.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0407337500.01 | RBH | None | None | None |
