Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_03G0179200 | OGI:03028630 | 35/50 | Minghui 63 | MH63RS3 | HZAU | Chr03:10887341-10890312 | ||||||||
| Gene Symbol | C3H21,OsC3H21 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | 02428_MH63RS3_DEL0311390,Basmati1_MH63RS3_DEL0306760,ZH11_MH63RS3_DEL0310500,DHX2_MH63RS3_DEL0310910,KY131_MH63RS3_DEL0310340,Kosh_MH63RS3_DEL0310920,132278_MH63RS3_OTH0310340,117425_MH63RS3_DEL0309080,Nipponbare_MH63RS3_DEL0310930,LJ_MH63RS3_DEL0310020,
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| DNA seq | TGTTGTTCCGACAACAGAATAAGGCAGGCCTGATCGTTACCGTGATATTAATCATTTTTAGTTTAGTACTGATACTTGTTGCCCCTTGAAACATTGATTAGACGTACATTTATTCAAAGTTGTAAAGACCAAAACATGTCCTGGTTTCCAACCTGGAAGAAATGAAACGTTCTTGACTATCTGTAGTCACTGTGGTACTCCTGTTCCAGACAATTTTATGAGCCCCTGTGTGATAGACTGACACGTAGAAGTAACAAAGAGAAATTTATTCTGCCCTTGTTGAGTAGGAGTACTAGCGGAGTAATCTCCGCAAGCGGACTAGCGGAGTCAGGAGCTCAGTGATTTGTCAATTCATTTTCATCCATGCTGGGCTGTAAGCAGAGTGGCGTATCTAGAAATTTTATGGGACTGGGCAAGCCTAACAATAAATTATAAAATGTACCTAATTATATACAAATCTATAGATTATTTTGGGGTGAGCATTTGCTTTGTTAGTTGTAGTTTGTTCTAAGCATGTTAATTATGTATGTACACTATACTACTGCTTCTGTCAGTGACTTAGTAATTAAAATGATTAGCAATAGCAAGGTAATTAGGATTAATTTACTGGGACATAGCTGGGCGTTTGCTCCGCCACTGGCTGTAAGCTAAAACCTTTGCTATTAATTAATAGCATGCTTATTCAGAGTTAAAATATACTATGACAATACCACAACAAGGGTTTTAACTGCAAACAAACATTTTTATCTCATTACAGATCATTGCGATGGTCAATTGCAACGTTGAGCACGGAGCCCTCGCAGTTTCCGCGGTGAAGCGTGTTCTGAACTTCTATATAAGGCGGGGGCAATCGAGTCACTTCCCCCGAGTCTCAAACCGCAGCTAACCTCCCGCTTCCCTCCAATTCCCCAACCCAACGGCCACATGAAGGTAACCGCCGCGAGCTCGTCGTCTCCCTCTCGATGAATCGATCCAAACCCTAGCCTCATCTCTCTTCTGCTGCTCCATTTGCAGCTTGGGATCTCGGGTGGCGCGGGCGAGGCGATGGAGGGGGAGCTCAGCTTCGTCTCGCCGGCGAGGTCGTCCTGCTTCTCCTTCGAGGGCGGCGGTTCTGGATCCCCGACGTGGGTGTCGACGGTGGAGGCGCTGCTCCGCTCGCCTACATCGAGCGTCTCCGATGGCGGCGGAGGTGGTGGTGGTGGCTACAACTCACCGGCACGGGCGTCGTCCCCGCTGCAGAAGCAGATCCCCGACTGCCGCGACGCTGGCGACTTCAGCTCTCTGACATGGGCGTCAACTCTGGAGAAGCCGCTCGAGTCGCCCTCCTCGTGCATCTCCGACGGCCGCGGCGGTGGCTTCGGCTCGCCGACAAGCGCGTTCCCGCCTGAGAAGCTGCTCATCTCGCCCCCAACGTGCGTCTCCGACAACCGCGGCGTCGGCAACGGTGGCGGCTTCCCCTCTCTGCCATGGGCGTCGTCTCTGGAGAGGCTACTCACGTCGCCCTCATCGTGCGTCTCCGACAGCCGCGGCGTCGGCAACGCTGACGACTTCCCTTCTCTGCCATGGGCATCATCTCTGGAGAAGCCACTCACGTCGCCCTCATCCTGCGTCTCCGACGGCCGGAGCGGTGGCTACAGCTCGCCTCTCGGGGCCTCGGCGGAGCGAGAGCGCGAGGTGCGCGAGGCGGAGATGCTCCTGCGCGCGATCGCCGAGCGCTACGACGACTGCTTCCTCCGCCTGCGCGACGCCGCGGCCGAGCTCTCAGACCTCCACCGCGAGCGCCTCCGTCTCGCCGCCGAGAACCTCCACCTCTCCCTCCTTCTCGAGGAGCTCGAGTCCGAGCAGCGGAAGCAGGCATCCGCCATGGCTCCGCCGAAGCTAGAGGAGGACGAAGCAGCACAGGGGGGCGCACCGAAGAGCATCTCCATTCGTTCGCCGGGCTACCTCTCTCAGAAGCAGCCGCAGGGGCAGGCCAGGCCACAGCGCTTCCGTGTTCGCGCTTCTCAGGCGATGGAGGTGAGCCCCCAATTCCTTGCTTGTAAGCTCGTCAGACATTTGCACACGAACCCTCACAGATAATTCAGAGTTGGTTCATATGTGATTAGATGGTGAGAATGCCAGCATTAATCCTCACAGATAATTTAGAGTTGGTTCATATGTGATTAGACGGTGACATTGTCAGCATTAAACTTTGCAAACCACACATGCTTTGGTAATTTGATGCCTTGTTTGTGATTTAGCAATGATAGGAAGCAATGTTGAATTGGATATGCTCGATTCTAGATTTGCAAATGCGGTAGCAGTCAATCTCTTAATTCTGAAAGTCTAGTTAGTGAATCTCGTTGGATATTTGCACACGAACCCTCACAGATAATTCAGATTTCTAATAATTCCTGCAAATTGGTTCATCCCTGTGATTACTGATTAGATGGTAACAATGTCAGCATTTAACTTGCAAAACTACACGTGTTCTGGCAATCTGTGTTAGCAATGATACAAAGCATCAAAGTGTGTTGAATTCAATTCTAAGTTGCATTTGCAATAACTTTCAGCCTTGTCAATATTTCTGAAAGTCTAATTACTGAATCTGGAGAAACTTCTTTAAGATTTCGCACCCCAACTGTTTGATTTTTGTGATGGGGAATCAATGTTCACCGAAGGAGGCAGCGGCAGCAGGGGATGAGGAGGATGAGGAGGACAAGGGCGGCGGCGAGGTGGAGGTGGAGGCGTACAGGCAGGGCGCGGCGAAGACGGAGCTGTGCAACAAGTGGGAGCGCGGCGCGTGCCCCTACGGCGCGCGCTGCCGGTTCGCGCACGGCCTGCAGGAGCTGCGCCCCGTCATCCGCCACCCGCGCTACAAGACCCTCCCCTGCCAGATGTTCGCCGCCGCCTCCGGCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACTCCCCGCTCCGCGCCGCCGCCGCCGAGTCCTTCTGCTACTAG
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| CDS seq | ATGAAGCTTGGGATCTCGGGTGGCGCGGGCGAGGCGATGGAGGGGGAGCTCAGCTTCGTCTCGCCGGCGAGGTCGTCCTGCTTCTCCTTCGAGGGCGGCGGTTCTGGATCCCCGACGTGGGTGTCGACGGTGGAGGCGCTGCTCCGCTCGCCTACATCGAGCGTCTCCGATGGCGGCGGAGGTGGTGGTGGTGGCTACAACTCACCGGCACGGGCGTCGTCCCCGCTGCAGAAGCAGATCCCCGACTGCCGCGACGCTGGCGACTTCAGCTCTCTGACATGGGCGTCAACTCTGGAGAAGCCGCTCGAGTCGCCCTCCTCGTGCATCTCCGACGGCCGCGGCGGTGGCTTCGGCTCGCCGACAAGCGCGTTCCCGCCTGAGAAGCTGCTCATCTCGCCCCCAACGTGCGTCTCCGACAACCGCGGCGTCGGCAACGGTGGCGGCTTCCCCTCTCTGCCATGGGCGTCGTCTCTGGAGAGGCTACTCACGTCGCCCTCATCGTGCGTCTCCGACAGCCGCGGCGTCGGCAACGCTGACGACTTCCCTTCTCTGCCATGGGCATCATCTCTGGAGAAGCCACTCACGTCGCCCTCATCCTGCGTCTCCGACGGCCGGAGCGGTGGCTACAGCTCGCCTCTCGGGGCCTCGGCGGAGCGAGAGCGCGAGGTGCGCGAGGCGGAGATGCTCCTGCGCGCGATCGCCGAGCGCTACGACGACTGCTTCCTCCGCCTGCGCGACGCCGCGGCCGAGCTCTCAGACCTCCACCGCGAGCGCCTCCGTCTCGCCGCCGAGAACCTCCACCTCTCCCTCCTTCTCGAGGAGCTCGAGTCCGAGCAGCGGAAGCAGGCATCCGCCATGGCTCCGCCGAAGCTAGAGGAGGACGAAGCAGCACAGGGGGGCGCACCGAAGAGCATCTCCATTCGTTCGCCGGGCTACCTCTCTCAGAAGCAGCCGCAGGGGCAGGCCAGGCCACAGCGCTTCCGTGTTCGCGCTTCTCAGGCGATGGAGGAGGCAGCGGCAGCAGGGGATGAGGAGGATGAGGAGGACAAGGGCGGCGGCGAGGTGGAGGTGGAGGCGTACAGGCAGGGCGCGGCGAAGACGGAGCTGTGCAACAAGTGGGAGCGCGGCGCGTGCCCCTACGGCGCGCGCTGCCGGTTCGCGCACGGCCTGCAGGAGCTGCGCCCCGTCATCCGCCACCCGCGCTACAAGACCCTCCCCTGCCAGATGTTCGCCGCCGCCTCCGGCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACTCCCCGCTCCGCGCCGCCGCCGCCGAGTCCTTCTGCTACTAG
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| Protein seq | MKLGISGGAGEAMEGELSFVSPARSSCFSFEGGGSGSPTWVSTVEALLRSPTSSVSDGGGGGGGGYNSPARASSPLQKQIPDCRDAGDFSSLTWASTLEKPLESPSSCISDGRGGGFGSPTSAFPPEKLLISPPTCVSDNRGVGNGGGFPSLPWASSLERLLTSPSSCVSDSRGVGNADDFPSLPWASSLEKPLTSPSSCVSDGRSGGYSSPLGASAEREREVREAEMLLRAIAERYDDCFLRLRDAAAELSDLHRERLRLAAENLHLSLLLEELESEQRKQASAMAPPKLEEDEAAQGGAPKSISIRSPGYLSQKQPQGQARPQRFRVRASQAMEEAAAAGDEEDEEDKGGGEVEVEAYRQGAAKTELCNKWERGACPYGARCRFAHGLQELRPVIRHPRYKTLPCQMFAAASGCPYGHRCHFRHSPLRAAAAESFCY |
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| Function | Putative zinc finger CCCH domain-containing protein 21 [UniProtKB/Swiss-Prot:Q10MN8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_03G0179200 | OsMH63_03T0179200.1 | Chr03 | 10887341 | 10890312 | + | maker | ||
| CDS seq | ATGAAGCTTGGGATCTCGGGTGGCGCGGGCGAGGCGATGGAGGGGGAGCTCAGCTTCGTCTCGCCGGCGAGGTCGTCCTGCTTCTCCTTCGAGGGCGGCGGTTCTGGATCCCCGACGTGGGTGTCGACGGTGGAGGCGCTGCTCCGCTCGCCTACATCGAGCGTCTCCGATGGCGGCGGAGGTGGTGGTGGTGGCTACAACTCACCGGCACGGGCGTCGTCCCCGCTGCAGAAGCAGATCCCCGACTGCCGCGACGCTGGCGACTTCAGCTCTCTGACATGGGCGTCAACTCTGGAGAAGCCGCTCGAGTCGCCCTCCTCGTGCATCTCCGACGGCCGCGGCGGTGGCTTCGGCTCGCCGACAAGCGCGTTCCCGCCTGAGAAGCTGCTCATCTCGCCCCCAACGTGCGTCTCCGACAACCGCGGCGTCGGCAACGGTGGCGGCTTCCCCTCTCTGCCATGGGCGTCGTCTCTGGAGAGGCTACTCACGTCGCCCTCATCGTGCGTCTCCGACAGCCGCGGCGTCGGCAACGCTGACGACTTCCCTTCTCTGCCATGGGCATCATCTCTGGAGAAGCCACTCACGTCGCCCTCATCCTGCGTCTCCGACGGCCGGAGCGGTGGCTACAGCTCGCCTCTCGGGGCCTCGGCGGAGCGAGAGCGCGAGGTGCGCGAGGCGGAGATGCTCCTGCGCGCGATCGCCGAGCGCTACGACGACTGCTTCCTCCGCCTGCGCGACGCCGCGGCCGAGCTCTCAGACCTCCACCGCGAGCGCCTCCGTCTCGCCGCCGAGAACCTCCACCTCTCCCTCCTTCTCGAGGAGCTCGAGTCCGAGCAGCGGAAGCAGGCATCCGCCATGGCTCCGCCGAAGCTAGAGGAGGACGAAGCAGCACAGGGGGGCGCACCGAAGAGCATCTCCATTCGTTCGCCGGGCTACCTCTCTCAGAAGCAGCCGCAGGGGCAGGCCAGGCCACAGCGCTTCCGTGTTCGCGCTTCTCAGGCGATGGAGGAGGCAGCGGCAGCAGGGGATGAGGAGGATGAGGAGGACAAGGGCGGCGGCGAGGTGGAGGTGGAGGCGTACAGGCAGGGCGCGGCGAAGACGGAGCTGTGCAACAAGTGGGAGCGCGGCGCGTGCCCCTACGGCGCGCGCTGCCGGTTCGCGCACGGCCTGCAGGAGCTGCGCCCCGTCATCCGCCACCCGCGCTACAAGACCCTCCCCTGCCAGATGTTCGCCGCCGCCTCCGGCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACTCCCCGCTCCGCGCCGCCGCCGCCGAGTCCTTCTGCTACTAG
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| Protein seq | MKLGISGGAGEAMEGELSFVSPARSSCFSFEGGGSGSPTWVSTVEALLRSPTSSVSDGGGGGGGGYNSPARASSPLQKQIPDCRDAGDFSSLTWASTLEKPLESPSSCISDGRGGGFGSPTSAFPPEKLLISPPTCVSDNRGVGNGGGFPSLPWASSLERLLTSPSSCVSDSRGVGNADDFPSLPWASSLEKPLTSPSSCVSDGRSGGYSSPLGASAEREREVREAEMLLRAIAERYDDCFLRLRDAAAELSDLHRERLRLAAENLHLSLLLEELESEQRKQASAMAPPKLEEDEAAQGGAPKSISIRSPGYLSQKQPQGQARPQRFRVRASQAMEEAAAAGDEEDEEDKGGGEVEVEAYRQGAAKTELCNKWERGACPYGARCRFAHGLQELRPVIRHPRYKTLPCQMFAAASGCPYGHRCHFRHSPLRAAAAESFCY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0121655 | 0.2008225 | 0.033702 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0301500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g18950 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0301500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0014660 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0014490 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0014490 | SBH | 0.201472 | 1.309905 | 7.812381 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0014470 | SBH | 0.025588 | 0.484922 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0014280 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0014190 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0181500 | RBH | 0.1634195 | 0.2222685 | 0.216517 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0014440 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0014440 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0014500 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0014350 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0014320 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G014260 | RBH | 0.0 | 0.0 | 0.258255 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0014150 | RBH | 0.0 | 0.0 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | R9311C03g11445 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_03g0158400 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_03g0158600 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_03g0146900 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_03g0160500 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0304461700.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0310752500.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_006847 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0309739900.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: DG | DG | SICAU | OsDGG0304902900.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0304463900.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0304897100.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0304942900.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: G8 | G8 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: II32 | II32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: J4155 | J4155 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0304453300.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0303479900.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0304484900.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0304480300.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0304459300.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0304981500.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0313581300.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | NA | NA | NA | NA | NA |
| Os XI-3: Tumba | Tumba | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: WSSM | WSSM | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y3551 | Y3551 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y58S | Y58S | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: YX1 | YX1 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0304496900.01 | RBH | None | None | None |
