Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_02G0475500 | OGI:02082460 | 37/50 | Minghui 63 | MH63RS3 | HZAU | Chr02:30535380-30540023 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
||||||||||
| DNA seq | ATGGAAGTCGGCATTTCGTACGATTTGGCCGCTGAAAACGAGATCACCGGGCCAATGATACGACCCTACGTGCCAACCTGCTGTCTACACAAAATTGGACCAATTGTTCCCTGCAAGAAGAAGGAAACATCAGAGCCCCGAGATCAGCTAGATCTTATTCTAGTTAATCTATCTATACTTCGTCGCCTCCTCCTCTCACAGTGGCTTTATCGCATCTTATGATTCTTATCCAGGCAATCAGGCATCATTCTTTAGCTCCTATGCCACAGATCAATTATCAGGTACCTTTTCCAGTTTCCTGCTGGGTTCCCTACTTTTCATCAAGTGCACATCTATGTTGGGAATCCAATCTTTGATGTGCTATATTAGTATATGGTGTGGATCCTGTTCTTATGATGTCACCGTCACATAATTACATGCTTACTTGCAGAGGTAAATACATGATTAATCAGAAAAATATCAGAAGTTTTTCTTTGGGAGTGCTAGGAGTTTGGTTCATTTGATCATAAATTTTCTTAGCTTGTTTCATCTTTCATATTATTTTTCTCAATGCACCACATATCATGATAGGCTGATATTGTTAGTCAACGTGATCAGGAAATCCAATACCCTTGGCTGGTAAGTTTGAGTTATAAATATTCAAATAAATATTTGAGTCCTTTTGTTTTCAAGTACCAAATCCGTAGAATAGATTATTGCCAAGAGAGCACCCTGGTACTTGACTGTAGAGATTTGTATCCCATGTAATACAAGAATCTTGGCCACTTGCATGGTGGGGGTTCTTCCCCATCGTCCACACCTTAGGATGTTGACAATTTGAATTATCACGTGGGAGATTCGCATATGTGCAGGTGACTTTTGTTTTTGCTGATGCGACTGATGTAAAGGAGCCAGTAAGTATTTTGTAATCACTTTCAGGCATAACCTATTTCTAAACTCTCATCATCATAACTGGATGACCTGTTCCTCTCTCTTATTAAAAACTTCCAGTTTGTGGCCTAGTCAACTATTTGATGTTGGCCAAAATGTAGACGTGGCAGGACTTTCATTTTAATTGGAAGTCCTGAGGACTAAGATGAAAGAACAAAAATCTGAAGTAAATGCTAAGAATTTACAATGTTAAAAAAAAAAACTGAACTACCAAATCGCATTTTGGCAGGAACAAACCATTTAGAAATGTTGAGCGAATTCATTTTGTATAGCTTTTGAAGTTCTCTTGAACAATTAGTCCTTTGAGAAAAGAAAGTTATGGAATGATGCCATTGGAATGTTCACCAAGAAAGAGAAATAAAACATGATTTTCTACATGGAATGGACCATTGTTATAATAAGTGGTAATTTCACCATCCTACAGGGTTACCAGAAAAGAAATTCCTTAGACTGTTTGGATCATGCTTGGATCAGATCTGTCATTTTCTTTTTACAGAAAATCTGGAGGTTCATAGTACCCTGAACGATCTACCAATCACTGTGCTACGGAAATCAAACATGTAAGTATGTATCCTCTCGCATAACATGCAGTTATCCCATGAATCTAGTTATGGCACTTCATTGTACACTAGATCCTATTTACATATTTTTTACTAGAATAAACCTATATTGCTCCCACCAGCAAGGTTAGTGACATTTTGGGATGACTGCAATTACATTGAAAAAAAAAGGTTTATGTAAGTTTTTCTTGAAAAATGTGTTCATGATATATTTATATTCCGTAAACATGTTACAGTAGAAATTAATGGCCAAACCCAAACTTACATGTCAATTTCCAAAATGTCAATTATCTGTGACTGGACATCAAAGTGACTTAATGTTTGAATGAAATAGCTATTTTCAATATAGTTTCTGTCTATGAACATTTTGACTGAATATCTCCAGTATGTCGTCATTATGCGCAAAGGGGTTGAATTCTAGGTGTTGATATGGATTGTTTTTATCTGTTTTGTTTGACTACATATCACAGTTGAATAATATATCTGGTTTGCATGTCATTCTTTTCTAGCACCATGACAGATTAGTTTAGTTGAAATATGAAGGGGTAGATAAGTACTTCTATCCTTTCTGGCGCAATAAAAGCTTATTTTCCTCAATTAGAGGAAGTCCAAATAGGCATATATTTAATGTGTGTCCGTTCCTACTCATTTTATTGGCATTTCCTTTAAATAGGTTCAGTGAAGCTGCAGAGTGAAGGTTATAGTGAAGACTGGCCTGCTATATGTGCATTGCACAAGACAATCTGCAGTCTTTTTGTCCTCTTGATTTGAATATAAAGGTTCTAATTCTACTAAAAATGAATATAATACAAGCATTCAATAAACTGTTTAGGACTTGCACATGTCTCATCATTTAGATTGTGATAAAATAAAAAAAAATATTTGAACATTTCTGTTTGAGAGGGGAGGATGTTAATACAAATTTCTAGTCTTCTGTTTTTACCTGGAAGGCTTCATAGCCACAGCTTCTATTCCAAAAACTATTTGCTTGTCGTAATCACTGAATTGATACACATTTTATGGTTTCTACAGCCATTCAGTTGACTTGAATCAGTACCAGAAATCACCTTTACTTGAAACATTCTACAAGTTGTTAGTGCCAATACCTTCACATAGTGATAACATATTACCTAGCATATGTTAACCATCAAATGCACCCTTAACACATTGTCCCAAACAGGGATCAAAGGATAAATGATCTCTCTAAATAGTTCTTTTTTTCTTCATATGTGTGTTAGGGTTGGGGTGTGGCAGAGGGGGTATTAGAAGGCCAAACCTCTGTGGTACACGTCTATAGATTCCAAATAAATGATACAGTACCTCTTTGGTACTCCCATCAACATGGTTCACACCACACCACTACACCAGTGACACCACCACCACCATTACAGGGTATTTTTCTTGGCCCCTCTGTATAAATAGCAGCACCATGTTCACTCTTTGTTCCATTGAAATACAAGCAACCATAAACAGTAGCCATTTCTAGGACCTTGGCCTTTCTTGAAGGAGGATGAGTTCATCCTGGACAACAAAGCAGAATAAGGTGTTTGAGAGGGCGCTGGCAATATATGACAGGGATACGCCAGATCGCTGGCAGAATGTGGCACGGGCAGTTGGTGGTGGAAAGTCAGTTGATGATGTGAAGAGGCACTATGAAAAGCTGATCAAGGACGTGGATCGCATTGACTCTACAGGAGGCCATCAAGGATCCCATTACAACAGCTCCAATGCTAGCAGCAGCAGCAGCAGCAGCAACTCTCGGGGCAGTGCCAATGAGGACCAGAGGTAATTTGGTGGCTCATCACTCTCTTCATGATCGTTCCATATATGCACCATCATTACCCTGTACATCCTCTTCTTATGAAGTTATTTACACAGGCCATGACTCATGAGTATATGTTTACTTGAGCTAGAGGCTTTTGTTCATTTTATTGTTTCTAGCTTACTATATTCTGCTGTCCACCTTGATTATCTTTTCCCTTCTAATCTGCAACATGTTTTTATTGCTTGTTCTGCTTTGTTCCGTTAGCTAGCATTTCTAGTTATTTTGCTTGTGTATGTGGACACAACCTTTGGTTATCCTTACCATGTGATTTCCACAAAGTAAGGCTAACAATTGTTCTTAGGATTTAGCTGGAGGCGACTTGTTTCTCAAGTCGTGCCATTAGTTTGTTAATTAGACATTCTTATGAAAACTTGAAATTTTACTAGCTCTTCAAAGTGCCTTTTTTTTTGGCCTTATCTAAACTACAATTGCCGTATCTCTTTATTACAATTACTGGTAACAAGTTGTGCTATTTTCTTCCTGTTTTTTGCTCTATGTTTGTTGGGACTTTATTTCAATGAGAAAATACATTATTTCCTTTTGCCATCCCTTGTCTAATTGTCAATTACATGCTTTGTTTGGCAACATGCAAATTTAACTAGATGGAAATATTCTGTACGGGAAACTGCAGGCAATATGCAAATTCAACATCATCTGCCCATCTGATCTAATTTGGTTTCGATTCTAAATTCTTTAATCTGGGGAAAGATATGGAGATAATCTAGTAGTCCTAGCTAGTTCCTAGCTATTAAACATAACTCGGCCATTCAATTATTTGTTGAAGAGATGAGTGTGCACTCTGCTGGAAGGATAAGTAGGCCAGGACTCATAACTACATATTGTAAGGCCCTAGTCTCGTGGCCCAGAAAATCGTTTATGCAAGTGAACAATTGGCATTCTTTCTATCAGTATGTCTGCACTGCTTCACACTTGCTTTTTAATTTGATTACTCTAGTTGTGTGCGTCTGTGAGAAAATAGACAGGCAAAGGCGCCAAGAATTGTATCCATCTTTTTGGAACCTGCCTTTGGATTCCTCTCCAGAAAGAGAAAGGCCCCATGAGAATGGAACCTAGCACAGCATTAAGCAACCATATGCATCTTTTACCGAAGAGTTGCAGGAAAAGCAACATAGAACCCCACCATCTTAAAGTTTTTCGCCTTTATGACGGGTATAAAGCGCTTTTAAATAGTGGGGCTTTTCTTGTCTTGCATGGAAGTGGTAACATTTTATCTTCATCTTTCCGTTGGAGAAGATGAATAAATGGGTTTATTATTGCTTTTTTAATTTCTTTTCTTGTTGCAGGAGGAGGTACCACAACTTTCAGTGA
More
|
||||||||||
| CDS seq | ATGGAAGTCGGCATTTCGTACGATTTGGCCGCTGAAAACGAGATCACCGGGCCAATGATACGACCCTACGTGCCAACCTGCTGTCTACACAAAATTGGACCAATTGTTCCCTGCAAGAAGAAGGAAACATCAGAGCCCCGAGATCAGCTAGATCTTATTCTAGCAATCAGGCATCATTCTTTAGCTCCTATGCCACAGATCAATTATCAGGTGACTTTTGTTTTTGCTGATGCGACTGATGTAAAGGAGCCAAATAAACCTATATTGCTCCCACCAGCAAGGAGGATGAGTTCATCCTGGACAACAAAGCAGAATAAGGTGTTTGAGAGGGCGCTGGCAATATATGACAGGGATACGCCAGATCGCTGGCAGAATGTGGCACGGGCAGTTGGTGGTGGAAAGTCAGTTGATGATGTGAAGAGGCACTATGAAAAGCTGATCAAGGACGTGGATCGCATTGACTCTACAGGAGGCCATCAAGGATCCCATTACAACAGCTCCAATGCTAGCAGCAGCAGCAGCAGCAGCAACTCTCGGGGCAGTGCCAATGAGGACCAGAGGAGGAGGTACCACAACTTTCAGTGA
More
|
||||||||||
| Protein seq | MEVGISYDLAAENEITGPMIRPYVPTCCLHKIGPIVPCKKKETSEPRDQLDLILAIRHHSLAPMPQINYQVTFVFADATDVKEPNKPILLPPARRMSSSWTTKQNKVFERALAIYDRDTPDRWQNVARAVGGGKSVDDVKRHYEKLIKDVDRIDSTGGHQGSHYNSSNASSSSSSSNSRGSANEDQRRRYHNFQ |
||||||||||
| Function | Protein RADIALIS-like 3 [UniProtKB/Swiss-Prot:Q6NNN0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_02G0475500 | OsMH63_02T0475500.1 | Chr02 | 30535380 | 30540023 | + | maker | ||
| CDS seq | ATGGAAGTCGGCATTTCGTACGATTTGGCCGCTGAAAACGAGATCACCGGGCCAATGATACGACCCTACGTGCCAACCTGCTGTCTACACAAAATTGGACCAATTGTTCCCTGCAAGAAGAAGGAAACATCAGAGCCCCGAGATCAGCTAGATCTTATTCTAGCAATCAGGCATCATTCTTTAGCTCCTATGCCACAGATCAATTATCAGGTGACTTTTGTTTTTGCTGATGCGACTGATGTAAAGGAGCCAAATAAACCTATATTGCTCCCACCAGCAAGGAGGATGAGTTCATCCTGGACAACAAAGCAGAATAAGGTGTTTGAGAGGGCGCTGGCAATATATGACAGGGATACGCCAGATCGCTGGCAGAATGTGGCACGGGCAGTTGGTGGTGGAAAGTCAGTTGATGATGTGAAGAGGCACTATGAAAAGCTGATCAAGGACGTGGATCGCATTGACTCTACAGGAGGCCATCAAGGATCCCATTACAACAGCTCCAATGCTAGCAGCAGCAGCAGCAGCAGCAACTCTCGGGGCAGTGCCAATGAGGACCAGAGGAGGAGGTACCACAACTTTCAGTGA
More
|
|||||||
| Protein seq | MEVGISYDLAAENEITGPMIRPYVPTCCLHKIGPIVPCKKKETSEPRDQLDLILAIRHHSLAPMPQINYQVTFVFADATDVKEPNKPILLPPARRMSSSWTTKQNKVFERALAIYDRDTPDRWQNVARAVGGGKSVDDVKRHYEKLIKDVDRIDSTGGHQGSHYNSSNASSSSSSSNSRGSANEDQRRRYHNFQ |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.1667775 | 5.3642715 | 11.6148125 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0706400 | RBH | 2.179206 | 1.986709 | 1.608883 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g47744 | RBH | 1.433998 | 0.945513 | 0.429333 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0706400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0030630 | RBH | 0.165773 | 0.000000 | 2.755903 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0030720 | RBH | 0.228002 | 1.865406 | 1.384443 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0030600 | RBH | 0.702427 | 1.376213 | 7.313461 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0030170 | RBH | 0.213678 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0030360 | RBH | 3.598245 | 0.000000 | 10.600504 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0233000 | RBH | 0.9485355 | 0.2064775 | 1.079196 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0030120 | RBH | 0.565794 | 0.204763 | 0.939513 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0030440 | RBH | 1.577637 | 0.041643 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0030200 | RBH | 1.561568 | 1.508258 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0030560 | RBH | 12.064564 | 19.797716 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0030380 | RBH | 1.139787 | 0.0 | 1.251067 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0030020 | RBH | 0.383005 | 1.206847 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G030650 | RBH | 0.306293 | 3.028825 | 3.589267 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0030410 | RBH | 1.772036 | 0.000000 | 1.563181 |
| Os XI: R9311 | R9311 | AGIS | R9311C02g08820 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_02g0342700 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_02g0347400 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_02g0324900 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_02g0344100 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0203381700.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0209070500.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_013403 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0208742300.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0203385100.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0204308300.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: G46 | G46 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: G630 | G630 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: G8 | G8 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: II32 | II32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0203361500.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0203376900.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0202104900.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0203402500.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | NA | NA | NA | NA | NA |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0203387300.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0204619500.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0203974500.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | NA | NA | NA | NA | NA |
| Os XI-2: TM | TM | SICAU | TMG0204759500.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: WSSM | WSSM | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y3551 | Y3551 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0203368300.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0203565100.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0203420500.01 | RBH | None | None | None |
