Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0672700 | OGI:01120240 | 12/50 | Minghui 63 | MH63RS3 | HZAU | Chr01:42785706-42786279 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | |||||||||||
| DNA seq | TCAGCACCTTCTCTCTTTTCCCTCTTCTCTCTCTTCCTCCTCTCTCACATTCTCCTCGTTCTCGTTGCCATCGCAGTGCTGCATCTGGCTGCAGAGGATCTCGCCCTGTGCGACGGCGAGCTGCATCTGCAGCTGTGACACCTGGTTCTGCAGGAAGGAGATGGCCCCGGCCCGACGCAACCGTAGACTGGGTCCCGTATCCGGTCGTTCGCCTCGTACACCAGGCTGCTCACCGCGTCGCCTTGCTGTTGCGCCGGTAGCTCCTGCATTGGAAACACGCATCAGACGCAAGCATGCATGCACGGTGGCGCGGGCGCCGCCATTGATGACGACCTTATACGTGTTCGTGCATAGGCCATGCAATGCCAATGGACATATATATATGTATGTTGGGTAAGAAGAAGTCTGATTTAATATACTGGAGCATCTTGCTAACATTGATGGCGCCGAAGACCTTGTGGACGATGGCGAACTTGTGGGGGTCGTCGGCGGGGAAGAAGGGCGCGAAGATGCAGTCCTTGGTGCACCGCCGCCGCAGCAGCTTGCACGACGCGCACGGCGACCCACTGCCCAT
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| CDS seq | ATGGGCAGTGGGTCGCCGTGCGCGTCGTGCAAGCTGCTGCGGCGGCGGTGCACCAAGGACTGCATCTTCGCGCCCTTCTTCCCCGCCGACGACCCCCACAAGTTCGCCATCGTCCACAAGGTCTTCGGCGCCATCAATGAGCTACCGGCGCAACAGCAAGGCGACGCGGTGAGCAGCCTGGTGTACGAGGCGAACGACCGGATACGGGACCCAAACCAGGTGTCACAGCTGCAGATGCAGCTCGCCGTCGCACAGGGCGAGATCCTCTGCAGCCAGATGCAGCACTGCGATGGCAACGAGAACGAGGAGAATGTGAGAGAGGAGGAAGAGAGAGAAGAGGGAAAAGAGAGAAGGTGCTGA |
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| Protein seq | MGSGSPCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGAINELPAQQQGDAVSSLVYEANDRIRDPNQVSQLQMQLAVAQGEILCSQMQHCDGNENEENVREEEEREEGKERRC |
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| Function | LOB domain-containing protein 12 [UniProtKB/Swiss-Prot:Q8LBW3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0672700 | OsMH63_01T0672700.1 | Chr01 | 42785706 | 42786279 | - | maker | ||
| CDS seq | ATGGGCAGTGGGTCGCCGTGCGCGTCGTGCAAGCTGCTGCGGCGGCGGTGCACCAAGGACTGCATCTTCGCGCCCTTCTTCCCCGCCGACGACCCCCACAAGTTCGCCATCGTCCACAAGGTCTTCGGCGCCATCAATGAGCTACCGGCGCAACAGCAAGGCGACGCGGTGAGCAGCCTGGTGTACGAGGCGAACGACCGGATACGGGACCCAAACCAGGTGTCACAGCTGCAGATGCAGCTCGCCGTCGCACAGGGCGAGATCCTCTGCAGCCAGATGCAGCACTGCGATGGCAACGAGAACGAGGAGAATGTGAGAGAGGAGGAAGAGAGAGAAGAGGGAAAAGAGAGAAGGTGCTGA
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| Protein seq | MGSGSPCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGAINELPAQQQGDAVSSLVYEANDRIRDPNQVSQLQMQLAVAQGEILCSQMQHCDGNENEENVREEEEREEGKERRC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0.017619 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0889400 | SBH | 0.161151 | 0.0 | 1.208444 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g66590 | SBH | 0.097005 | 0.0 | 0.402939 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0889400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0043090 | SBH | 0.000000 | 0.0 | 0.410490 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0042670 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0045870 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0045390 | SBH | 0.569320 | 0.697768 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0044970 | SBH | 5.269920 | 11.945391 | 18.575041 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0044490 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0674500 | SBH | 9.8974255 | 12.7697325 | 16.5199395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0044940 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0044890 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0045210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0045220 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0044950 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G045300 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0045000 | RBH | 0.0 | 0.0 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | R9311C01g04745 | SBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_01g0495600 | SBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_01g0528900 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_01g0469500 | SBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | NA | NA | NA | NA | NA |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0101497100.01 | SBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0105270500.01 | SBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_004942 | SBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0104810700.01 | SBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0104891700.01 | SBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0101706100.01 | SBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0101500700.01 | SBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0100939700.01 | SBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0101706800.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0101715500.01 | SBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0101480300.01 | SBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0101471700.01 | SBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0104890900.01 | SBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0101475300.01 | SBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0101487100.01 | SBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0101135700.01 | SBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0101511500.01 | SBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0101489900.01 | SBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0101496700.01 | SBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0102487900.01 | SBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0102850500.01 | SBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0107937700.01 | SBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0101498500.01 | SBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0101448700.01 | SBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0101456700.01 | SBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0101480900.01 | SBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0101484300.01 | SBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0101491700.01 | SBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0101487900.01 | SBH | None | None | None |
