Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0411300 | OGI:01075930 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr01:26362974-26369618 | ||||||||
| Gene Symbol | C3H8,OsC3H8 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | |||||||||||
| DNA seq | CCACATTTTAAATCCTTTTTTTCCCGACTATTAATGATTTAAGATTCAAGGTTTGGTTGCACACATTCAAAGAGTATATATTTTAGTATCCTTTTTGACAACAGAGGTAGTATATATTTTAGTTAGATATGCTCAACAAAGTCAATAAAAAAAATACTATAGCATATGATGTCACCTGCACATGAACGCCCAAACCGAAAGGTGCATATACTCAAAATGCATCAGCTAAAACCACTAAATAACAGGGAATACATCAGATGCCACAGAGATCTACAAAGACGACATACCTACCCAAGTAGTGCGGTTTCATGTTTAATTCATATGCGAGGAATGAATAAGGCATGGATTTAATTCGGCCTTGCGTCAATATATTTGTCTCTCTTCTCAGCTCCCTGAATTCGACACCTTGGCGATAGCCTCCTGAGGGGGTGGGTGGTCGAACTTGCACTGCATACCAAACTTGCACACGCCAGTCTTCATGTAGAAGGCACATACCACGGCATCCTGCATATCAGCATATGCATTAGTTTAGGCATCAAAACAAATGCTATCCAGGAGGATATTCATACATGACTACATTCCGAGAATGCATCTATGTAGCTAGATGAAAGGGTGAACAAGTGATAACACCTCTTCTTATATGATGATGAAAAAAGCAATCCAAGGAACATCATCAAGATCGTTACAATATGCAGGGTGACGGTTACGATATGCAGCTTACTATATCATCAAGATCAATGCTAACGGGAGAACATATGTAAAAAATGAAAGGACTGCAGCCCAAAAATAGTAAGATCATTGGAACGAGCGGAGTAGCCAAGGTATTACCGACAAGCTTTGAAATGTTACCTCTCTTCTTGGTAGGCCAGCAAGAGTAAGCTGCACAGACTCCTCAGCAGGCTCCCAGTTTGCAGAGGGATCGGGAGCAGAACGATCAATTGGGTGGTGAAACTTGCATCGGTCAGCAAACTTGCAAAATCCTGTCTTCATGTAGAACTGCATTAAGAAAAGAGCATAACGCTGTAGAGGCACACCCAGACTATATGCGTAAAGTAGTTGATATCAATCAGCTAGTTAATAATTCATAGCGAAGAGACTGTCATACATCACAAACAGTTGCTCCAGGCCTCTGGGGATAGGTGACTGGCCCAGGTCCAACCTGCATTTTACAAAAGAGCATATCAACTTGTGTATCTCACAGCACCTATTTCCAACTTTAATTTCCTTTGTTTACTCTTACAGGCATGTGTGCCGCATGAAAATCAAAGCCTTGCATGAAGTTTGCAGATGAATTTAGCAGCATGGATTCCGGAGTAGGGAGAATGGTTTGACCCAGTGGAAGTGGAAAATTTAAAACTGCATTGAGCACCAAATTACCATAAGAATACATGTCGAGTCATAAGATTCAATTCATGTAAGAATCATGAACACTATCAGACTTGTTTAATTTAGATGCAATAACAGATATGGCAGAAGAGTGCGGCTATCAGATTGAAGTTGTTAAGTTCAAGGCATGGACAGTTTTGAATGTTGAATACAATACAAGCTTGTTTGGTTCATATGGCAAGTTCTCTGCTTGTTTTGGCTTTAAAGGTACAGTAGAAAGGACACGGTCTTAAAAATAATGTGTCCAAAAGAAGAAAAGAAAAAGTTAGTAAAACCTGGTTAGTATTTGTCTAATGTCTTCAGTATTCCAGTCAACCGTGCTGCAACTCATAACAAGATCTGATCATTTATTCATTTCATAATATTTACATCAGATATAAGTAGCTTTACATTGCCCCATACTTGAACTAATGAATTTTAAGAACCTTGAAGGTACCTAGAGAATGAATTCATTCCTTCTCTTATTCTTTAATGCATTGTATTCCTTCTGCCTCGCAGTATAAGAAACCATGCAGCGGCATAAGAAAAGGTTAATGGCAACAGATACCAATTTCTATTGTACTGCCACATGGACTTGGGATGAATAAGCTGAGGTTTGGTGGATGATAACAGATTAGAAGGAAGACAGGAGTCTGGATGGATCAGATAAAACAGGGAGAAATAGAAGTAGAGGTAAATAAACTTGTTTATTCCTTGCTGCCAACTAAGGGTTGTAGAGATCCTTTTTCATAGCCACATAAACAGATAAGTTCAGCCAATGCATCAGCTCACAAACTATATCTCCAACAGATAAGCCTAACAACGTATCTGAGAACTAACAAACTAATTGTTGAAAAACAGATAAAAATACTAGAACTGATAACACAACCACCACCACTCAAGCTCTTTTACAGCAGAGAAGTAGGGGGTGCAACCGAGTGGAAACTATGCCACAAGTACACCCTTGATTTCTGCAAAATATTATGAAAAAAATGATCCTAAAGAAAATGCACTAATATTATGAAAAAGAGGAGTACAAGGCTATTACGTAAGTGCTCTATCCAACCAGGGCAAATTGCAAGTTAAATTATGCTATTAAATAGACGAGCAGCTAGATGATGGTTGCCACGCTCCTTCTGAGAAGTGGAAGAAGGCCAAAAGGATCTTAACTACCTCAAATTCATGTCATGATAAATTTAACTTTGTGAATATGGTTAGTTGTGACCATGAGTGACAAACCTAGACGATCAGGATGGTTGAATCGACAAGTAGAACCGAACTTGCAACTGTAGAGGGACAAAAGGAAATGTGAGATTCCAAGTATCTCCAAACTCATGCAGAAGTGCCAGAGCCAACAGAAAATAGTGTTATTCTGCTTAAGGGGATACCTGCCCATCTTCATGTAAAAAGGACAATCAACTTCACCCTGCCATGAAGGAGAAGAGAAGGTATTAAACAAAACAAGCAAAAGGTATTTCACCTAGAATCATGTAAATAGACAAAAAGATTTCACTATATACACCAGTATATTGATAAAAATTTCAGTCTTATCAATACCCCAAAAAACAGAACTTGTTGAGAGAGGAATTATGTACCAAAACCATGTACCAGGAATTGAGTACAAAATACAGATGTGCGGAATCTAAGCATAGAGCATCCTCAACATCGTTATCTTGCATTACATAATTCACAGGTCTTCTCAAAATGGTTTACGAATGAAACAAAGTTATCAGGCACTTGATAAGGACATACTGGTCTCATAGGCAGCCCTTTAGAGTTAAACTCTTGCGCAGCAGCAACTGGAGTTTGCATCTTCGCTGAAACTGAATCAGCTGCTGAACCAATATCCGTTTCTCCTTCAACAGTCACTGCACTTTCGGGTTCATTTTGACTTGAAGGTATTTCAATATCCTTGGGATGATTGAACTTACACATTGCACGAAATTTGCATTTGCCTGTTTTTGCATAAAACTGAGGTACAAAAGCACAACTGAAAATCGGTTTTTAAGCTTGATGCCATACAAAAAGGAAAAGAAGGTGCAGTAGCTTCTTACAGAACAAAGTGGCTCAGAAGGCCTCACTGGTAAGATAGAACTATCAGCAATTAGATGCTTCTGCAATTTCATAAAAGAGCATACAGGTTGAGACCTGAGCGGTTGAGATGATGACATGTTAGTAGTCTAGTAAGTAAATGGAAACAACTTACATCATTGGTTTTTCCAGACGCTAATGCATTAACCTTTTCCTTTGGATGATTAAACTTGCATTTCGATCCAAACTTGCATTTACCAGTCTTCATAAAAAACTGCATCATCAAGAACAACATTATGAGCATATTTGTCATATTGATTCTAAAATAGGGCTATGAACTGCTTACAGGACAATCTGGTTCCCCTTGTTGTTCTGGATAGGATTCTTCAACATTTGCAGCCTGCTAAGAAGTTTTAAGAAAGCAAACCAGAAGGGATGAATTTGGAGGATAAGAAGACACAATTACAACCACAAACATCACAATAAATATTTCGGAAACCTTAAAAACACCAAATTGCATAAGGTAATTAACCAGAGCCAGAGCATTTTATTAAAAGTGGTCTAGAAAAAATATATCTACTGAAAACTGTAGTCGTGTCTTTTTTATAACTATATACCCAACCCCCCAAAACACTCAATTCCGATGTTTATTGGCAGTTGAAGACTTGATGTACAGATGGGCATTCATCAAAAGATTAAAAGCCAACTACTATTAAACCTATGACTGTGAAGAGAAATGTTTAAAGGCAAGTGTGCAAATGTTTGCTGATTGGTCTACAAGAAAACAAGTTCCTCTAAGACACTGCAATGCCGGTACACCCTGAGTCCCACACCAGCAATACATTTGTCAGATGAGTCACAGCATGCTTCATTGCTTCAGCCAGATCAAACTATATATTCTCCATAAAAGGAAAACTAAGCAGATGTATGCAGTTGCAACTGCAAAGAAATTATATGTCATAGAGTAACCAAACAGTGCTTAACACTGACATATGCATGAACAAGAGCCACCCCTAAGCTCAAATATATAAGCCACATGATCAACAAAGAATATCAATTCCATGTCTTTATTGTGAAATTCACACTTGGGATAGTCCTACTCACAAATCTTGGCTGGACTCCTAGTGCTGTAAGGTACCAAAAAACATGGTGTTGACACGAATTGCCAATATAGCCCTTATACAAGATCAGCGTGTTATCCAATGCTTCAAACAGCAGATGCTAAAGCAATGCAGCAACAGGAGCAGACAAATATATGCCACAAATGTTTAGTTCACACAATAATTTTTTTTGTCCAAAATATCCGGTTTCCTGTCACAACTGTTTTTCACTTAAATACTGTCAATCCAATTAATGAAAGCTTTGATTCCTAAATTCTTTCTTCTAAGGTTCAAAGAAACACACATAATTAACACCACCTGCACTCTTAGATTCTTTCTTTCCTTTTTGCTACTAGCGATGCTAACAGTAATACACTTTTGGTTTTCAAAGTAACATATACACCTTAAAAATAGTATTATAATATACATTACTATAAAATATAGACCTCTATAAATAATAACATTGACAGGTGATCACCTCTTTCCAATTTGGAATCCCACCCTCTGGAACCCATTGTGGATGGTCAAATTTGCAGGAACCTCCGAATTTACAGGTTCGGGTCATCATATAGAAGGCACAGTCCTTTTCCCCCGGTCGCTGTGGATATATAGGAAGGCTGCTTTCAAGCCTAGGGCGTTTGGTCATAGTATTTGAAGAATACAAAGCCTCAATCTGTTCAACAGTACTATGGCTTCCCATAATTGGCTGATGATAGAGAACTATAGTAGATATACAAAAGAACTTTATAAGCTACATGTATTAGACAAGAACAAAAGCAAGGATAATAGTAATAGTGAATAGGTAGTAATAATAGTAATAGTAGTATAGAGAAAAGGATCAAGGATGACAACTGATTACTGCACTAGTGCACTACATAAGAAAACAAGACAAGTCCAGTTAACCAAGGATTGAGAAACTATCATGATGGTAAAATGACAAACTGCACAAAGCTCTCACTGCTAGAAGCACACCAAGTCCAAAGGACTACCAAGTAACTTCCTCCAAGTTGGACGAGCAACAGAAGCATGTCAATGAAAACAACTAAGCTCAACCTACTCAAAGAAGATCTATCAGAAGCTTCTCCGACTGAGAAGCTAGTGAAGAAGATCAGTGGTGGAGCCAAAGCTCTAACTTTGTGGTGTCAGATGCATGAAATGTGGGACCAATTCCCATAGATTTAATAATGTTCTGTAGGCATATCCACTAATCCATACATGCTTTTGCTGTATGTTGCAAAAAACTGTAGGGGCATTTCATTTCAGTCGACCACACAACTTTAACATGGCTCCCGCAATGGAGAGGATAGGTTAGTGATCCTGAAACGCTTCCATCACACAGGAACAAAACAGTTCAACCTTACTTGCCTCAGCCTCAGCCATTTTTAATAATTTAAAACCGACCGACCACGAGACAGGCATGGGGATTGGTTAGTGCTAAATTATGCTATGATTTCCACGTAGCCATTCTCCGCTACATTCCAATTGAAATTAAATATCCAAATGGAGCGCATCTTGCGGTAAAACGAAGTAAATCGTACGTGTTGGGATATAATACAAGGTAACAGAACCCAGCCACAATTCTCTCTACCAACAAAATGAAATGATCTGCACTAAATGCTGCAAAGAATCCCCCCTCCTCCTCTTTCTTGTCAGCCTAACACCGACAACAAGCCGCCATAGCAAACGTAATCAACTCTCGAAATAACAGAACACGCTTTATCAACCAATCCGTGCACCTATACGATTCTCGAATCAGTGAGCATCATCCAAAGGGAACCACACCCGTCAACGGACACAAGGGCAGATGATGAAGGGGAGCTGGCTCTCACCTCCCATGGATCGCCTCGCGCCGGCCAGCCGCGCGTCGAGGTCGGCGGCGGCCGAGGAAGGGTTGGCGAGCGGGCGGCCGCCGTAGCGGGCCGCGATGAGGTCGACCTCGTAGGACGAGTACCCCGCCGCGGCCGCGCCCTCGCCGCCCGCGGCGCCGCCGTGGCCGTGCGGGTAGAAGGGGTCCGACATCGACGCTCCCCCCGACGCCGCCGACGCGGCTAGGGTTTTCGCGGACGGTGGTTGCCGGCTTGCGCTCGCGGTGCGTGCGTGTGTGCGTGAGAGAGAGAGCAAGTGGATTCGCACGCCACTTCAGTGTCAC
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| CDS seq | ATGTCGGACCCCTTCTACCCGCACGGCCACGGCGGCGCCGCGGGCGGCGAGGGCGCGGCCGCGGCGGGGTACTCGTCCTACGAGGTCGACCTCATCGCGGCCCGCTACGGCGGCCGCCCGCTCGCCAACCCTTCCTCGGCCGCCGCCGACCTCGACGCGCGGCTGGCCGGCGCGAGGCGATCCATGGGAGTTCTCTATCATCAGCCAATTATGGGAAGCCATAGTACTGTTGAACAGATTGAGGCTTTGTATTCTTCAAATACTATGACCAAACGCCCTAGGCTTGAAAGCAGCCTTCCTATATATCCACAGCGACCGGGGGAAAAGGACTGTGCCTTCTATATGATGACCCGAACCTGTAAATTCGGAGGTTCCTGCAAATTTGACCATCCACAATGGGTTCCAGAGGGTGGGATTCCAAATTGGAAAGAGGCTGCAAATGTTGAAGAATCCTATCCAGAACAACAAGGGGAACCAGATTGTCCTTTTTTTATGAAGACTGGTAAATGCAAGTTTGGATCGAAATGCAAGTTTAATCATCCAAAGGAAAAGGTTAATGCATTAGCGTCTGGAAAAACCAATGATAAGCATCTAATTGCTGATAGTTCTATCTTACCAGTGAGGCCTTCTGAGCCACTTTGTTCTTTTTATGCAAAAACAGGCAAATGCAAATTTCGTGCAATGTGTAAGTTCAATCATCCCAAGGATATTGAAATACCTTCAAGTCAAAATGAACCCGAAAGTGCAGTGACTGTTGAAGGAGAAACGGATATTGGTTCAGCAGCTGATTCAGTTTCAGCGAAGATGCAAACTCCAGTTGCTGCTGCGCAAGAGTTTAACTCTAAAGGGCTGCCTATGAGACCAGTGAAATACCTTTTGCTTGTTTTGTTTAATACCTTCTCTTCTCCTTCATGGCAGGGTGAAGTTGATTGTCCTTTTTACATGAAGATGGGCAGTTGCAAGTTCGGTTCTACTTGTCGATTCAACCATCCTGATCGTCTAGTTTTAAATTTTCCACTTCCACTGGGTCAAACCATTCTCCCTACTCCGGAATCCATGCTGCTAAATTCATCTGCAAACTTCATGCAAGGCTTTGATTTTCATGCGGCACACATGCCTGTTGGACCTGGGCCAGTCACCTATCCCCAGAGGCCTGGAGCAACTGTTTGTGATTTCTACATGAAGACAGGATTTTGCAAGTTTGCTGACCGATGCAAGTTTCACCACCCAATTGATCGTTCTGCTCCCGATCCCTCTGCAAACTGGGAGCCTGCTGAGGAGTCTGTGCAGCTTACTCTTGCTGGCCTACCAAGAAGAGAGGATGCCGTGGTATGTGCCTTCTACATGAAGACTGGCGTGTGCAAGTTTGGTATGCAGTGCAAGTTCGACCACCCACCCCCTCAGGAGGCTATCGCCAAGGTGTCGAATTCAGGGAGCTGA
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| Protein seq | MSDPFYPHGHGGAAGGEGAAAAGYSSYEVDLIAARYGGRPLANPSSAAADLDARLAGARRSMGVLYHQPIMGSHSTVEQIEALYSSNTMTKRPRLESSLPIYPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEAANVEESYPEQQGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGKTNDKHLIADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFNSKGLPMRPVKYLLLVLFNTFSSPSWQGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPLGQTILPTPESMLLNSSANFMQGFDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHPPPQEAIAKVSNSGS |
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| Function | Zinc finger CCCH domain-containing protein 8 [UniProtKB/Swiss-Prot:Q5ZDJ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0411300 | OsMH63_01T0411300.1 | Chr01 | 26363065 | 26369583 | - | maker | ||
| CDS seq | ATGTCGGACCCCTTCTACCCGCACGGCCACGGCGGCGCCGCGGGCGGCGAGGGCGCGGCCGCGGCGGGGTACTCGTCCTACGAGGTCGACCTCATCGCGGCCCGCTACGGCGGCCGCCCGCTCGCCAACCCTTCCTCGGCCGCCGCCGACCTCGACGCGCGGCTGGCCGGCGCGAGGCGATCCATGGGAGTTCTCTATCATCAGCCAATTATGGGAAGCCATAGTACTGTTGAACAGATTGAGGCTTTGTATTCTTCAAATACTATGACCAAACGCCCTAGGCTTGAAAGCAGCCTTCCTATATATCCACAGCGACCGGGGGAAAAGGACTGTGCCTTCTATATGATGACCCGAACCTGTAAATTCGGAGGTTCCTGCAAATTTGACCATCCACAATGGGTTCCAGAGGGTGGGATTCCAAATTGGAAAGAGGCTGCAAATGTTGAAGAATCCTATCCAGAACAACAAGGGGAACCAGATTGTCCTTTTTTTATGAAGACTGGTAAATGCAAGTTTGGATCGAAATGCAAGTTTAATCATCCAAAGGAAAAGGTTAATGCATTAGCGTCTGGAAAAACCAATGATAAGCATCTAATTGCTGATAGTTCTATCTTACCAGTGAGGCCTTCTGAGCCACTTTGTTCTTTTTATGCAAAAACAGGCAAATGCAAATTTCGTGCAATGTGTAAGTTCAATCATCCCAAGGATATTGAAATACCTTCAAGTCAAAATGAACCCGAAAGTGCAGTGACTGTTGAAGGAGAAACGGATATTGGTTCAGCAGCTGATTCAGTTTCAGCGAAGATGCAAACTCCAGTTGCTGCTGCGCAAGAGTTTAACTCTAAAGGGCTGCCTATGAGACCAGTGAAATACCTTTTGCTTGTTTTGTTTAATACCTTCTCTTCTCCTTCATGGCAGGGTGAAGTTGATTGTCCTTTTTACATGAAGATGGGCAGTTGCAAGTTCGGTTCTACTTGTCGATTCAACCATCCTGATCGTCTAGTTTTAAATTTTCCACTTCCACTGGGTCAAACCATTCTCCCTACTCCGGAATCCATGCTGCTAAATTCATCTGCAAACTTCATGCAAGGCTTTGATTTTCATGCGGCACACATGCCTGTTGGACCTGGGCCAGTCACCTATCCCCAGAGGCCTGGAGCAACTGTTTGTGATTTCTACATGAAGACAGGATTTTGCAAGTTTGCTGACCGATGCAAGTTTCACCACCCAATTGATCGTTCTGCTCCCGATCCCTCTGCAAACTGGGAGCCTGCTGAGGAGTCTGTGCAGCTTACTCTTGCTGGCCTACCAAGAAGAGAGGATGCCGTGGTATGTGCCTTCTACATGAAGACTGGCGTGTGCAAGTTTGGTATGCAGTGCAAGTTCGACCACCCACCCCCTCAGGAGGCTATCGCCAAGGTGTCGAATTCAGGGAGCTGA
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| Protein seq | MSDPFYPHGHGGAAGGEGAAAAGYSSYEVDLIAARYGGRPLANPSSAAADLDARLAGARRSMGVLYHQPIMGSHSTVEQIEALYSSNTMTKRPRLESSLPIYPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEAANVEESYPEQQGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGKTNDKHLIADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFNSKGLPMRPVKYLLLVLFNTFSSPSWQGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPLGQTILPTPESMLLNSSANFMQGFDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHPPPQEAIAKVSNSGS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0411300 | OsMH63_01T0411300.2 | Chr01 | 26362974 | 26369618 | - | maker | ||
| CDS seq | ATGTCGGACCCCTTCTACCCGCACGGCCACGGCGGCGCCGCGGGCGGCGAGGGCGCGGCCGCGGCGGGGTACTCGTCCTACGAGGTCGACCTCATCGCGGCCCGCTACGGCGGCCGCCCGCTCGCCAACCCTTCCTCGGCCGCCGCCGACCTCGACGCGCGGCTGGCCGGCGCGAGGCGATCCATGGGAGTTCTCTATCATCAGCCAATTATGGGAAGCCATAGTACTGTTGAACAGATTGAGGCTTTGTATTCTTCAAATACTATGACCAAACGCCCTAGGCTTGAAAGCAGCCTTCCTATATATCCACAGCGACCGGGGGAAAAGGACTGTGCCTTCTATATGATGACCCGAACCTGTAAATTCGGAGGTTCCTGCAAATTTGACCATCCACAATGGGTTCCAGAGGGTGGGATTCCAAATTGGAAAGAGGCTGCAAATGTTGAAGAATCCTATCCAGAACAACAAGGGGAACCAGATTGTCCTTTTTTTATGAAGACTGGTAAATGCAAGTTTGGATCGAAATGCAAGTTTAATCATCCAAAGGAAAAGGTTAATGCATTAGCGTCTGGAAAAACCAATGATAAGCATCTAATTGCTGATAGTTCTATCTTACCAGTGAGGCCTTCTGAGCCACTTTGTTCTTTTTATGCAAAAACAGGCAAATGCAAATTTCGTGCAATGTGTAAGTTCAATCATCCCAAGGATATTGAAATACCTTCAAGTCAAAATGAACCCGAAAGTGCAGTGACTGTTGAAGGAGAAACGGATATTGGTTCAGCAGCTGATTCAGTTTCAGCGAAGATGCAAACTCCAGTTGCTGCTGCGCAAGAGTTTAACTCTAAAGGGCTGCCTATGAGACCAGGTGAAGTTGATTGTCCTTTTTACATGAAGATGGGCAGTTGCAAGTTCGGTTCTACTTGTCGATTCAACCATCCTGATCGTCTAGTTTTAAATTTTCCACTTCCACTGGGTCAAACCATTCTCCCTACTCCGGAATCCATGCTGCTAAATTCATCTGCAAACTTCATGCAAGGCTTTGATTTTCATGCGGCACACATGCCTGTTGGACCTGGGCCAGTCACCTATCCCCAGAGGCCTGGAGCAACTGTTTGTGATTTCTACATGAAGACAGGATTTTGCAAGTTTGCTGACCGATGCAAGTTTCACCACCCAATTGATCGTTCTGCTCCCGATCCCTCTGCAAACTGGGAGCCTGCTGAGGAGTCTGTGCAGCTTACTCTTGCTGGCCTACCAAGAAGAGAGGATGCCGTGGTATGTGCCTTCTACATGAAGACTGGCGTGTGCAAGTTTGGTATGCAGTGCAAGTTCGACCACCCACCCCCTCAGGAGGCTATCGCCAAGGTGTCGAATTCAGGGAGCTGA
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| Protein seq | MSDPFYPHGHGGAAGGEGAAAAGYSSYEVDLIAARYGGRPLANPSSAAADLDARLAGARRSMGVLYHQPIMGSHSTVEQIEALYSSNTMTKRPRLESSLPIYPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEAANVEESYPEQQGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGKTNDKHLIADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPLGQTILPTPESMLLNSSANFMQGFDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHPPPQEAIAKVSNSGS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0411300 | OsMH63_01T0411300.3 | Chr01 | 26363065 | 26369583 | - | maker | ||
| CDS seq | ATGTCGGACCCCTTCTACCCGCACGGCCACGGCGGCGCCGCGGGCGGCGAGGGCGCGGCCGCGGCGGGGTACTCGTCCTACGAGGTCGACCTCATCGCGGCCCGCTACGGCGGCCGCCCGCTCGCCAACCCTTCCTCGGCCGCCGCCGACCTCGACGCGCGGCTGGCCGGCGCGAGGCGATCCATGGGAGTTCTCTATCATCAGCCAATTATGGGAAGCCATAGTACTGTTGAACAGATTGAGGCTTTGTATTCTTCAAATACTATGACCAAACGCCCTAGGCTTGAAAGCAGCCTTCCTATATATCCACAGCGACCGGGGGAAAAGGACTGTGCCTTCTATATGATGACCCGAACCTGTAAATTCGGAGGTTCCTGCAAATTTGACCATCCACAATGGGTTCCAGAGGGTGGGATTCCAAATTGGAAAGAGCAGGCTGCAAATGTTGAAGAATCCTATCCAGAACAACAAGGGGAACCAGATTGTCCTTTTTTTATGAAGACTGGTAAATGCAAGTTTGGATCGAAATGCAAGTTTAATCATCCAAAGGAAAAGGTTAATGCATTAGCGTCTGGAAAAACCAATGATAAGCATCTAATTGCTGATAGTTCTATCTTACCAGTGAGGCCTTCTGAGCCACTTTGTTCTTTTTATGCAAAAACAGGCAAATGCAAATTTCGTGCAATGTGTAAGTTCAATCATCCCAAGGATATTGAAATACCTTCAAGTCAAAATGAACCCGAAAGTGCAGTGACTGTTGAAGGAGAAACGGATATTGGTTCAGCAGCTGATTCAGTTTCAGCGAAGATGCAAACTCCAGTTGCTGCTGCGCAAGAGTTTAACTCTAAAGGGCTGCCTATGAGACCAGGTGAAGTTGATTGTCCTTTTTACATGAAGATGGGCAGTTGCAAGTTCGGTTCTACTTGTCGATTCAACCATCCTGATCGTCTAGTTTTAAATTTTCCACTTCCACTGGGTCAAACCATTCTCCCTACTCCGGAATCCATGCTGCTAAATTCATCTGCAAACTTCATGCAAGGCTTTGATTTTCATGCGGCACACATGCCTGTTGGACCTGGGCCAGTCACCTATCCCCAGAGGCCTGGAGCAACTGTTTGTGATTTCTACATGAAGACAGGATTTTGCAAGTTTGCTGACCGATGCAAGTTTCACCACCCAATTGATCGTTCTGCTCCCGATCCCTCTGCAAACTGGGAGCCTGCTGAGGAGTCTGTGCAGCTTACTCTTGCTGGCCTACCAAGAAGAGAGGATGCCGTGGTATGTGCCTTCTACATGAAGACTGGCGTGTGCAAGTTTGGTATGCAGTGCAAGTTCGACCACCCACCCCCTCAGGAGGCTATCGCCAAGGTGTCGAATTCAGGGAGCTGA
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| Protein seq | MSDPFYPHGHGGAAGGEGAAAAGYSSYEVDLIAARYGGRPLANPSSAAADLDARLAGARRSMGVLYHQPIMGSHSTVEQIEALYSSNTMTKRPRLESSLPIYPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEQAANVEESYPEQQGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGKTNDKHLIADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPLGQTILPTPESMLLNSSANFMQGFDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHPPPQEAIAKVSNSGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 9.246558 | 25.665588 | 31.1953565 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0616400 | RBH | 1.628881 | 1.403358 | 4.116314 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g42970 | RBH | 1.156784 | 0.939599 | 1.145278 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0616400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0025290 | RBH | 0.254107 | 3.131669 | 7.580993 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0024920 | RBH | 0.397448 | 5.183992 | 2.225233 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0025240 | RBH | 1.902058 | 7.435653 | 6.243529 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0024580 | RBH | 0.244548 | 0.604429 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0024310 | RBH | 2.194587 | 1.194383 | 14.477201 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0023990 | RBH | 0.347599 | 0.648000 | 0.902250 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0399700 | RBH | 7.1932735 | 20.168069 | 23.1304935 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0024250 | RBH | 0.151730 | 0.378963 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0024250 | RBH | 0.103177 | 7.794608 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0024480 | RBH | 4.645548 | 12.940882 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0024490 | RBH | 1.458640 | 0.675582 | 1.105029 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0024370 | RBH | 0.479259 | 2.347023 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G024630 | RBH | 0.391598 | 4.883447 | 4.416601 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0024370 | RBH | 2.181796 | 19.948076 | 24.501778 |
| Os XI: R9311 | R9311 | AGIS | R9311C01g02746 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_01g0289900 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_01g0293100 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_01g0280000 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_01g0298000 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0100918800.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0103394800.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_002673 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0103134000.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0103172400.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0101088800.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0100919400.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0100561600.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0101018200.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0101082800.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0100925600.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0100892200.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0103073200.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0100909800.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0100908800.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0100669400.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0100932600.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0100912600.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0100925200.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0101546400.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0101794600.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0105151200.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0100939400.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0100887400.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0100902400.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0100924600.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0100926400.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0100962400.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0100912600.01 | RBH | None | None | None |
