Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0011810 | OGI:11034350 | 44/50 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:12803780-12805941 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | II32_127564_INV1116470_1,II32_127564_OTH1116500,II32_127564_INS1120670,II32_127564_TRA1120680,DG_127564_OTH1119880,DG_127564_INV1119640,WSSM_127564_OTH1114720,XL628S_127564_INV1125090,ZS97RS3_127564_INV1126520,G8_127564_OTH1112750,G8_127564_DEL1112650,J4155S_127564_INV1123510,DHX2_127564_OTH1118500,J4155_127564_INV1114750,FS32_127564_OTH1115560,Basmati1_127564_INV1123760,LJ_127564_INV1119520,G46_127564_INV1117220,ZH11_127564_OTH1120290,LK638S_127564_INV1124970,Lemont_127564_INV1123450,125619_127564_INV1115110,S548_127564_INV1115870,IR64_127564_OTH1113640,IR64_127564_INV1113450,R527_127564_INV1113370,FH838_127564_OTH1120130,FH838_127564_INV1120020,132278_127564_OTH1121130,R498_127564_INV1114840,CN1_127564_OTH1121290,CN1_127564_INV1121210,TM_127564_OTH1120170,125827_127564_OTH1121100,HZ_127564_INV1124650,
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| DNA seq | gtatcaaatgcacttagcagtatgaccgtttaatgagggcatcatttgtgctcaatccatttctcctatattacaaacagacggctacttacatgcacaacagattggtgcaaatcctctgcgtgtcagtgtcactatatgagagaaattccagacaactctagtataatgtcactctgctgattaaaaataatgatgaatttgaagttttctgtattatttcacgtgttatttctaggagcatacaaaacagcacaattcttggtgctgaatttacattgccagacaagtttgcaattaataataggctccttaataatatatacatacttgaacatataaactcatatacacaagtagtgagatgtcgttgtgaaaccttattcccacattcaagtagggagttgggattggtcagattcaagcatctatgaggggcaTtatgaagaagattaccttttatcacaattatcaatcgcaacgcaatgggccaacccttatgcctttcttatgtgcaatggcccgcaattcctctgacaacaagctgtcctcgatgattacctgaattaatcgagtggcttcctgtgcaaataattcaacatcggctgctgcaatgctaaggcagcgagtgatgtcgatgacctccactgaccggccacagtatctgagcaacgataccaaagatcctcgagtgaggcacctgcaacccctgagcctgatatcaattagattatggcaggacgatagcatggcaccaacctccttgtcactgagagtctcgttgtatgacaaatcaagacggcgaaggcggcgcatgctctggctgaggaaggtaagcagtccaggctcccgttccaccacatcgcagttcaccaaggcaagctcttcgataccagctccagtggttgtgcgtgcgagggaccggagtccgtcgccagtgatgagcacacagctctgaagccggagcgcagcgaggctatgcccgccattctggctttgctgaccttgctcggcctcggcaccgatcgctaggaggtggtcattgtgcaagtcgagagggaggcggaGgtctaacgtgtgcaacgctgcgccacgctggtggatgaaccggtggagggcctcccggctgccgccatcgtacaccaggagtgacttgagcacacggcagcgatcagcagcaaggaggaggacgtggtcagagacggagcgacaagcacggagctctagcgcgagcaggccagcaaggcatcccgcgaagaactgcgacgagggcccgtccccagtgccgtcacaggcgcgcagctgaagccactggaggttcccacatcgtcgccacaaccacccgatccctcggtcgccggagcagatgccgcacagagacagcctctctagaggcaaagtgccaatggtctcaccgttgccgtcgacatcatcagagctccatccggcgtagtcaacggcggcggcggcagcggagttgacgaggtagaaggatttgaggcggggcaagaacgcaatccagcagaaagagaggggacggagggcggtcaggtgaagcgaggtgaggccgtagaaggctgggcaggcagcaaccagcgccgcaggcgagatagccgaatcaggcaggaacctcagcccggagagctgcgcggccgacggcgaagacgcgaccacgagcagcatcgcgtccgcgacctgggcggttgcggctgtgcagaccaccgccagggcggagagataggggaaccgagacagcagcgcagagagcggcgccaacaccgaggcgtcggaggagaccggcaggcggagggtcagggaggcaatcgacgcgcggaggagggcgtaccagcggcgggagacgagggacacagccggcgcggaggcgcgcggcagcaggcggaacacctcctgcagcaggtcgtcgcacagcgccgcgtccatgccgacgccaccgccgcagcatccggcagcgcgacggcctccgccgccgcctccagcggtggggcgggagtttgtcggcgccgtggttgcacgccggggactcagctcgccatcggatttgggtggggccacggcgcgtgcgttggatttggggaaggaaggtaggggaaggaagatagacctgtggcttgcaagattgggtatttgggtgggggaaagag
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| CDS seq | MDAALCDDLLQEVFRLLPRASAPAVSLVSRRWYALLRASIASLTLRLPVSSDASVLAPLSALLSRFPYLSALAVVCTAATAQVADAMLLVVASSPSAAQLSGLRFLPDSAISPAALVAACPAFYGLTSLHLTALRPLSFCWIAFLPRLKSFYLVNSAAAAAVDYAGWSSDDVDGNGETIGTLPLERLSLCGICSGDRGIGWLWRRCGNLQWLQLRACDGTGDGPSSQFFAGCLAGLLALELRACRSVSDHVLLLAADRCRVLKSLLVYDGGSREALHRFIHQRGAALHTLDLRLPLDLHNDHLLAIGAEAEQGQQSQNGGHSLAALRLQSCVLITGDGLRSLARTTTGAGIEELALVNCDVVEREPGLLTFLSQSMRRLRRLDLSYNETLSDKEVGAMLSSCHNLIDIRLRGCRCLTRGSLVSLLRYCGRSVEVIDITRCLSIAAADVELFAQEATRLIQVIIEDSLLSEELRAIAHKKGIRVGPLRCD
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| Protein seq | MDAALCDDLLQEVFRLLPRASAPAVSLVSRRWYALLRASIASLTLRLPVSSDASVLAPLSALLSRFPYLSALAVVCTAATAQVADAMLLVVASSPSAAQLSGLRFLPDSAISPAALVAACPAFYGLTSLHLTALRPLSFCWIAFLPRLKSFYLVNSAAAAAVDYAGWSSDDVDGNGETIGTLPLERLSLCGICSGDRGIGWLWRRCGNLQWLQLRACDGTGDGPSSQFFAGCLAGLLALELRACRSVSDHVLLLAADRCRVLKSLLVYDGGSREALHRFIHQRGAALHTLDLRLPLDLHNDHLLAIGAEAEQGQQSQNGGHSLAALRLQSCVLITGDGLRSLARTTTGAGIEELALVNCDVVEREPGLLTFLSQSMRRLRRLDLSYNETLSDKEVGAMLSSCHNLIDIRLRGCRCLTRGSLVSLLRYCGRSVEVIDITRCLSIAAADVELFAQEATRLIQVIIEDSLLSEELRAIAHKKGIRVGPLRCD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0011810 | OsLima_11g0011810.01 | Chr11 | 12803780 | 12805941 | - | NAM | ||
| CDS seq | - |
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| Protein seq | MDAALCDDLLQEVFRLLPRASAPAVSLVSRRWYALLRASIASLTLRLPVSSDASVLAPLSALLSRFPYLSALAVVCTAATAQVADAMLLVVASSPSAAQLSGLRFLPDSAISPAALVAACPAFYGLTSLHLTALRPLSFCWIAFLPRLKSFYLVNSAAAAAVDYAGWSSDDVDGNGETIGTLPLERLSLCGICSGDRGIGWLWRRCGNLQWLQLRACDGTGDGPSSQFFAGCLAGLLALELRACRSVSDHVLLLAADRCRVLKSLLVYDGGSREALHRFIHQRGAALHTLDLRLPLDLHNDHLLAIGAEAEQGQQSQNGGHSLAALRLQSCVLITGDGLRSLARTTTGAGIEELALVNCDVVEREPGLLTFLSQSMRRLRRLDLSYNETLSDKEVGAMLSSCHNLIDIRLRGCRCLTRGSLVSLLRYCGRSVEVIDITRCLSIAAADVELFAQEATRLIQVIIEDSLLSEELRAIAHKKGIRVGPLRCD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.248816 | 0.169351 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000630 | SBH | 0.000000 | 2.864494 | 5.172485 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0011700 | RBH | 0.179170 | 1.746538 | 1.481749 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000640 | SBH | 0.915245 | 1.268180 | 12.714535 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000640 | SBH | 0.054087 | 0.205511 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0011720 | RBH | 3.891782 | 1.833926 | 8.929750 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0184700 | RBH | 4.924074 | 17.5861155 | 8.9823225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0011600 | RBH | 0.269592 | 0.298275 | 0.568033 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_Ung0001610 | RBH | 0.570281 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0011560 | RBH | 6.560196 | 10.264499 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0011330 | RBH | 0.255017 | 0.0 | 0.382726 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0011600 | RBH | 0.626498 | 3.865838 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G011450 | RBH | 0.437091 | 0.368311 | 1.451924 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0011510 | RBH | 1.104713 | 7.326757 | 4.045391 |
| Os XI: R9311 | R9311 | AGIS | R9311C11g36625 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_11g0135300 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_11g0132700 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_11g0130400 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_11g0134100 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1121539100.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1135150300.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_027734 | SBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1131856000.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1133450700.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1125103600.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1128760500.01 | SBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1129490600.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1121412100.01 | SBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1120960800.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1117326700.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1125318600.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1133704700.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1122362700.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1129644500.01 | SBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1121187100.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1122298100.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG1128340100.01 | SBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1119917900.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G1122255500.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1142538900.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1129267000.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1124635700.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1119588200.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1125169200.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1127541600.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1130115900.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1127063300.01 | SBH | None | None | None |
