Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsJ4155_11g0132700 | OGI:11034350 | 44/50 | Os XI-adm: J4155S | J4155S | PKU | Chr11:13275119-13276564 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | LJ_J4155S_TRA1121590,Y3551_J4155S_INV1115660,R9311_J4155S_OTH1120570,R9311_J4155S_INV1120440,FH838_J4155S_INV1115790,CN1_J4155S_INV1116140_3,R498_J4155S_OTH1114380,R498_J4155S_INV1114250,R498_J4155S_INS1114260,Basmati1_J4155S_TRA1125490,YX1_J4155S_OTH1114200,125827_J4155S_INV1117920_23,R527_J4155S_OTH1122000,R527_J4155S_INV1121790,II32_J4155S_DEL1110880,II32_J4155S_DEL1110970,127742_J4155S_OTH1120180,127742_J4155S_INV1120040,G8_J4155S_INV1108760,S548_J4155S_OTH1117550,S548_J4155S_INV1117400,MH63RS3_J4155S_OTH1120710,MH63RS3_J4155S_INV1120540,132278_J4155S_INV1122200,132278_J4155S_OTH1122340,Lemont_J4155S_DEL1123800,Lemont_J4155S_INV1124010,Lemont_J4155S_INS1124070,117534_J4155S_OTH1116850,117534_J4155S_INV1116100,Tumba_J4155S_OTH1114590,Tumba_J4155S_INV1114240,WSSM_J4155S_INV1113030,02428_J4155S_DEL1119290,02428_J4155S_INV1119650,02428_J4155S_OTH1119760,IR64_J4155S_INV1108700_1,128077_J4155S_DEL1121950,128077_J4155S_OTH1120430,128077_J4155S_INV1120260_2,ZH11_J4155S_INV1121220,ZH11_J4155S_OTH1121350,Y58S_J4155S_INV1123160,127564_J4155S_INV1115400,FS32_J4155S_OTH1113370,G630_J4155S_OTH1116540,127652_J4155S_INV1127850,G46_J4155S_DEL1112270,G46_J4155S_DEL1112410,G46_J4155S_DEL1112440,DHX2_J4155S_INV1119360,DHX2_J4155S_OTH1119490,DG_J4155S_INV1113150_1,132424_J4155S_INV1119050,
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| DNA seq | ATGGACGCGGCGCTGTGCGACGACCTGCTGCAGGAGGTGTTCCGCCTGCTGCCGCGCGCCTCCGCGCCGGCTGTGTCCCTCGTCTCCCGCCGCTGGTACGCCCTCCTCCGCGCGTCGATTGCCTCCCTGACCCTCCGCCTGCCGGTCTCCTCCGACGCCTCGGTGTTGGCGCCGCTCTCTGCGCTGCTGTCTCGGTTCCCCTATCTCTCCGCCCTGGCGGTGGTCTGCACAGCCGCAACCGCCCAGGTCGCGGACGCGATGCTGCTCGTGGTCGCGTCTTCGCCGTCGGCCGCGCAGCTCTCCGGGCTGAGGTTCCTGCCTGATTCGGCTATCTCGCCTGCGGCGCTGGTTGCTGCCTGCCCAGCCTTCTACGGCCTCACCTCGCTTCACCTGACCGCCCTCCGTCCCCTCTCTTTCTGCTGGATTGCGTTCTTGCCCCGCCTCAAATCCTTCTACCTCGTCAACTCCGCTGCCGCCGCCGCCGTTGACTACGCCGGATGGAGCTCTGATGATGTCGACGGCAACGGTGAGACCATTGGCACTTTGCCTCTAGAGAGGCTGTCTCTGTGCGGCATCTGCTCCGGCGACCGAGGGATCGGGTGGTTGTGGCGACGATGTGGGAACCTCCAGTGGCTTCAGCTGCGCGCCTGTGACGGCACTGGGGACGGGCCCTCGTCGCAGTTCTTCGCGGGATGCCTTGCTGGCCTGCTCGCGCTAGAGCTCCGTGCTTGTCGCTCCGTCTCTGACCACGTCCTCCTCCTTGCTGCTGATCGCTGCCGTGTGCTCAAGTCACTCCTGGTGTACGATGGCGGCAGCCGGGAGGCCCTCCACCGGTTCATCCACCAGCGTGGCGCAGCGTTGCACACGTTAGACCTCCGCCTCCCTCTCGACTTGCACAATGACCACCTCCTAGCGATCGGTGCCGAGGCCGAGCAAGGTCAGCAAAGCCAGAATGGCGGGCATAGCCTCGCTGCGCTCCGGCTTCAGAGCTGTGTGCTCATCACTGGCGACGGACTCCGGTCCCTCGCACGCACAACCACTGGAGCTGGTATCGAAGAGCTTGCCTTGGTGAACTGCGATGTGGTGGAACGGGAGCCTGGACTGCTTACCTTCCTCAGCCAGAGCATGCGCCGCCTTCGCCGTCTTGATTTGTCATACAACGAGACTCTCAGTGACAAGGAGGTTGGTGCCATGCTATCGTCCTGCCATAATCTAATTGATATCAGGCTCAGGGGTTGCAGGTGCCTCACTCGAGGATCTTTGGTATCGTTGCTCAGATACTGTGGCCGGTCAGTGGAGGTCATCGACATCACTCGCTGCCTTAGCATTGCAGCAGCCGATGTTGAATTATTTGCACAGGAAGCCACTCGATTAATTCAGGTAATCATCGAGGACAGCTTGTTGTCAGAGGAATTGCGGGCCATTGCACATAAGAAAGGCATAAGG
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| CDS seq | MDAALCDDLLQEVFRLLPRASAPAVSLVSRRWYALLRASIASLTLRLPVSSDASVLAPLSALLSRFPYLSALAVVCTAATAQVADAMLLVVASSPSAAQLSGLRFLPDSAISPAALVAACPAFYGLTSLHLTALRPLSFCWIAFLPRLKSFYLVNSAAAAAVDYAGWSSDDVDGNGETIGTLPLERLSLCGICSGDRGIGWLWRRCGNLQWLQLRACDGTGDGPSSQFFAGCLAGLLALELRACRSVSDHVLLLAADRCRVLKSLLVYDGGSREALHRFIHQRGAALHTLDLRLPLDLHNDHLLAIGAEAEQGQQSQNGGHSLAALRLQSCVLITGDGLRSLARTTTGAGIEELALVNCDVVEREPGLLTFLSQSMRRLRRLDLSYNETLSDKEVGAMLSSCHNLIDIRLRGCRCLTRGSLVSLLRYCGRSVEVIDITRCLSIAAADVELFAQEATRLIQVIIEDSLLSEELRAIAHKKGIR
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| Protein seq | MDAALCDDLLQEVFRLLPRASAPAVSLVSRRWYALLRASIASLTLRLPVSSDASVLAPLSALLSRFPYLSALAVVCTAATAQVADAMLLVVASSPSAAQLSGLRFLPDSAISPAALVAACPAFYGLTSLHLTALRPLSFCWIAFLPRLKSFYLVNSAAAAAVDYAGWSSDDVDGNGETIGTLPLERLSLCGICSGDRGIGWLWRRCGNLQWLQLRACDGTGDGPSSQFFAGCLAGLLALELRACRSVSDHVLLLAADRCRVLKSLLVYDGGSREALHRFIHQRGAALHTLDLRLPLDLHNDHLLAIGAEAEQGQQSQNGGHSLAALRLQSCVLITGDGLRSLARTTTGAGIEELALVNCDVVEREPGLLTFLSQSMRRLRRLDLSYNETLSDKEVGAMLSSCHNLIDIRLRGCRCLTRGSLVSLLRYCGRSVEVIDITRCLSIAAADVELFAQEATRLIQVIIEDSLLSEELRAIAHKKGIR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsJ4155_11g0132700 | OsJ4155_11g0132700.10 | Chr11 | 13275119 | 13276564 | + | . | ||
| CDS seq | ATGGACGCGGCGCTGTGCGACGACCTGCTGCAGGAGGTGTTCCGCCTGCTGCCGCGCGCCTCCGCGCCGGCTGTGTCCCTCGTCTCCCGCCGCTGGTACGCCCTCCTCCGCGCGTCGATTGCCTCCCTGACCCTCCGCCTGCCGGTCTCCTCCGACGCCTCGGTGTTGGCGCCGCTCTCTGCGCTGCTGTCTCGGTTCCCCTATCTCTCCGCCCTGGCGGTGGTCTGCACAGCCGCAACCGCCCAGGTCGCGGACGCGATGCTGCTCGTGGTCGCGTCTTCGCCGTCGGCCGCGCAGCTCTCCGGGCTGAGGTTCCTGCCTGATTCGGCTATCTCGCCTGCGGCGCTGGTTGCTGCCTGCCCAGCCTTCTACGGCCTCACCTCGCTTCACCTGACCGCCCTCCGTCCCCTCTCTTTCTGCTGGATTGCGTTCTTGCCCCGCCTCAAATCCTTCTACCTCGTCAACTCCGCTGCCGCCGCCGCCGTTGACTACGCCGGATGGAGCTCTGATGATGTCGACGGCAACGGTGAGACCATTGGCACTTTGCCTCTAGAGAGGCTGTCTCTGTGCGGCATCTGCTCCGGCGACCGAGGGATCGGGTGGTTGTGGCGACGATGTGGGAACCTCCAGTGGCTTCAGCTGCGCGCCTGTGACGGCACTGGGGACGGGCCCTCGTCGCAGTTCTTCGCGGGATGCCTTGCTGGCCTGCTCGCGCTAGAGCTCCGTGCTTGTCGCTCCGTCTCTGACCACGTCCTCCTCCTTGCTGCTGATCGCTGCCGTGTGCTCAAGTCACTCCTGGTGTACGATGGCGGCAGCCGGGAGGCCCTCCACCGGTTCATCCACCAGCGTGGCGCAGCGTTGCACACGTTAGACCTCCGCCTCCCTCTCGACTTGCACAATGACCACCTCCTAGCGATCGGTGCCGAGGCCGAGCAAGGTCAGCAAAGCCAGAATGGCGGGCATAGCCTCGCTGCGCTCCGGCTTCAGAGCTGTGTGCTCATCACTGGCGACGGACTCCGGTCCCTCGCACGCACAACCACTGGAGCTGGTATCGAAGAGCTTGCCTTGGTGAACTGCGATGTGGTGGAACGGGAGCCTGGACTGCTTACCTTCCTCAGCCAGAGCATGCGCCGCCTTCGCCGTCTTGATTTGTCATACAACGAGACTCTCAGTGACAAGGAGGTTGGTGCCATGCTATCGTCCTGCCATAATCTAATTGATATCAGGCTCAGGGGTTGCAGGTGCCTCACTCGAGGATCTTTGGTATCGTTGCTCAGATACTGTGGCCGGTCAGTGGAGGTCATCGACATCACTCGCTGCCTTAGCATTGCAGCAGCCGATGTTGAATTATTTGCACAGGAAGCCACTCGATTAATTCAGGTAATCATCGAGGACAGCTTGTTGTCAGAGGAATTGCGGGCCATTGCACATAAGAAAGGCATAAGG
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| Protein seq | MDAALCDDLLQEVFRLLPRASAPAVSLVSRRWYALLRASIASLTLRLPVSSDASVLAPLSALLSRFPYLSALAVVCTAATAQVADAMLLVVASSPSAAQLSGLRFLPDSAISPAALVAACPAFYGLTSLHLTALRPLSFCWIAFLPRLKSFYLVNSAAAAAVDYAGWSSDDVDGNGETIGTLPLERLSLCGICSGDRGIGWLWRRCGNLQWLQLRACDGTGDGPSSQFFAGCLAGLLALELRACRSVSDHVLLLAADRCRVLKSLLVYDGGSREALHRFIHQRGAALHTLDLRLPLDLHNDHLLAIGAEAEQGQQSQNGGHSLAALRLQSCVLITGDGLRSLARTTTGAGIEELALVNCDVVEREPGLLTFLSQSMRRLRRLDLSYNETLSDKEVGAMLSSCHNLIDIRLRGCRCLTRGSLVSLLRYCGRSVEVIDITRCLSIAAADVELFAQEATRLIQVIIEDSLLSEELRAIAHKKGIR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000630 | SBH | 0.000000 | 2.864494 | 5.172485 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0011700 | RBH | 0.179170 | 1.746538 | 1.481749 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000640 | SBH | 0.915245 | 1.268180 | 12.714535 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000640 | SBH | 0.054087 | 0.205511 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0011720 | RBH | 3.891782 | 1.833926 | 8.929750 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0184700 | RBH | 4.924074 | 17.5861155 | 8.9823225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0011600 | RBH | 0.269592 | 0.298275 | 0.568033 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0011810 | RBH | 0.248816 | 0.169351 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_Ung0001610 | RBH | 0.570281 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0011560 | RBH | 6.560196 | 10.264499 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0011330 | RBH | 0.255017 | 0.0 | 0.382726 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0011600 | RBH | 0.626498 | 3.865838 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G011450 | RBH | 0.437091 | 0.368311 | 1.451924 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0011510 | RBH | 1.104713 | 7.326757 | 4.045391 |
| Os XI: R9311 | R9311 | AGIS | R9311C11g36625 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_11g0135300 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_11g0130400 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_11g0134100 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1121539100.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1135150300.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1131856000.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1133450700.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1125103600.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1128760500.01 | SBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1129490600.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1120954300.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1117326700.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1125318600.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1133704700.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1122362700.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0036021800.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1118114900.01 | SBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1121187100.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1122298100.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0033955800.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1119917900.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G1122255500.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1142538900.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1129267000.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1124635700.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1119588200.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1125169200.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1127541600.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1130115900.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1127063300.01 | SBH | None | None | None |
