Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| R9311C03g10348 | OGI:03009170 | 49/50 | Os XI: R9311 | R9311 | AGIS | Chr03:3539609-3540930 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | |||||||||||
| DNA seq | GAAGGTGAGCAGCCAACTCAGTTCGTCCCCTTATTTCTTCAACCATTCTCCTCCTACTGCTTCCTCTTTCTTCTTCTTCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCCAGCGCGGCCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTGGTAAGAGCCGATTTCGGAGACGACACCATATATCAGGTTCTGCTTCCTCCCATTATATTCCATTTTTGATGCCTATCTTGTCACTTAGAGTGAAACACAAGTAGCAATGGGGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGGTGATGCCTATCTTCCGATTTTATCCTTTTTTCGTAGCATTACACCTGCTAACAAGTTTGGATTAAACACGAGCAGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGTGTTTATTAATTCTCATTAATTTCAGTTTTAGCTTTCAATGATTACAAAAGTTATATGAACTTGTGTATGTGAACTCTAAAAAAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGGTATGTAAAATGACTTTGTTGCTTCATGTAGTTTGTACTATGGCTAATCAACTTTTCTTGCAGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACACAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGCTGACCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTTTCCATTTCAAGGAGGTTGACGACGTTCTTGTTCTGAAGGTTCATGTTCTCAAGTAGTGTGGTGGATGAAAATCACCATTTTGTCTGGCAATATGTAATGCCATCCAAATTCGTATGATGTAAAGCTAGTTAAGACCTTATTATGTGGTTGACCTTTCCAGTACAATCTTATTATGTGCTAGTTAAGACTTGATTATGTGGGTCAACTATCTGTTAATGGATGCTTGTCAAGATGGAGGAACTATCTATGTGTTGTTGTGTCA
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| CDS seq | ATGACCAATGCGAAAATGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACACAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGCTGACCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTTTCCATTTCAAGGAGGTTGACGACGTTCTTGTTCTGAAGGTTCATGTTCTCAAGTAG |
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| Protein seq | MTNAKMTFAVQFSERYINKYIGSPIDDLMVSMAGTTQSYQMRLKRSKDSRAMLTTGWNQLIDAKAFDEGDVCLFHFKEVDDVLVLKVHVLK |
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| Function | B3 domain-containing protein Os03g0164300 [UniProtKB/Swiss-Prot:B7EIH2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| R9311C03g10348 | R9311C03g10348.t1 | Chr03 | 3539609 | 3540930 | + | GenePre | ||
| CDS seq | ATGACCAATGCGAAAATGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACACAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGCTGACCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTTTCCATTTCAAGGAGGTTGACGACGTTCTTGTTCTGAAGGTTCATGTTCTCAAGTAG
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| Protein seq | MTNAKMTFAVQFSERYINKYIGSPIDDLMVSMAGTTQSYQMRLKRSKDSRAMLTTGWNQLIDAKAFDEGDVCLFHFKEVDDVLVLKVHVLK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0620400 | SBH | 0.060460 | 0.000000 | 0.613433 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g06850 | RBH | 0.102751 | 0.0 | 0.251397 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0620400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0004870 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0004800 | RBH | 0.0 | 0.0 | 0.711965 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0004840 | RBH | 0.000000 | 0.0 | 1.805885 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0004770 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0004810 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0055200 | RBH | 0.4458845 | 4.0689475 | 24.7284595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0004690 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0055600 | RBH | 1.840372 | 4.8847655 | 14.813879 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0004790 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0004770 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0004750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0004790 | RBH | 0.0 | 0.0 | 0.347731 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0004770 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G004780 | RBH | 0.000000 | 0.000000 | 0.493248 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | OsHZ_03g0049200 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_03g0049800 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_03g0047900 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_03g0050800 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0305191300.01 | SBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | NA | NA | NA | NA | NA |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_008198 | SBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0310634100.01 | SBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0311932900.01 | SBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0305194700.01 | SBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0307527900.01 | SBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0304420100.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0305825100.01 | SBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0305156100.01 | SBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0305171500.01 | SBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0311720700.01 | SBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0305175500.01 | SBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0305176100.01 | SBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0305161300.01 | SBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0305222100.01 | SBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0304036300.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0305167300.01 | SBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0305279700.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0304442100.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0315100300.01 | SBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0307903900.01 | SBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0305144500.01 | SBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0305161300.01 | SBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0305194100.01 | SBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0308271900.01 | SBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0305224700.01 | SBH | None | None | None |
