Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_09G0314200 | OGI:09056640 | 3/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr09:19200059-19202160 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACAGGATTGAAACCCCTGCTTTGACCCATGCTCTCCCTTCCTCCTTGATCTTTGCTAGAATTGAGGATGGCGTAGATGCATTGCTGCGGAAGATTCTTGCGTTTCTTTCGCACCAAATTTCCCACGAGATTAAAATCACCAGGGTCCTGAGAGGCTTGCGTGGGGTGTTTGGAGATTCCGTTACGAGTGTCCACCATTGCTCGACTGAGTGACAGCTTTCCCAGTTGTCCATCTGAAGGTCAGTCCCAGTCCATCTCTGCATTTCTGCCCATATCCTCTTTGTGAGTCTGCATTTGTCCAGGAGATGCAGGGCCGATTCATCAACATTATAACAAAGTGGGCAAATCTTTTGGTTTTGCCATCCTCTTTTTTCCAGCCTGTCTGCCGTCCATACTCTATTTTATGTGACCAGCCAAGAGAAGAACTTGCACTTCGGCGGCGCCCATGCCTTCCAGATTGACTGATAGAAGGTAGATTTAGCAGCCCCAAGGAATTGTAGTCGATAGGCCGATTTTGCCGAGTACTGCCCATTTGCTGTGAGGTTCCATCGGATGCTGTCGTGGTTTTCGCTTAGAGGCCTCATATCTCTGATCATTCTCCAGAGGCGGACATACTGTTGGAGGTGATTCGCCTCGAAGATGCGAGAGACATCAATATCTCGTATCCACTTGTTTTCTGCTAAGGCATCATGCACAGTCGTATTCTTTCTTCTAGAGGCCACGAAAATATCTAGGGCAATCAATTGTGGTGTTTGATTGTCTAGCCATTTTGAGCTCCAAAAGCGTGCAATTTTGCCATCTCCCACCGTTATTGTTGTTGCGGCCGCGAAGAGGTTCTTGTCTAGCTGATTGCATGGTAGCACAGATCCCACCCAAGGCTTATCCGGCGCCACCCATTCGTTCCAAAGCCATCTGAGCTTAGAGCTGATGCGAAATATTGCAGGTTCATAACACCTAGGCCACCCAAATCTTTTGGCCTGCAGACCCTTTTCCAGTTGACTTTACATTTTCCCCCCGAGATGTTTTCGCCCCTTGCCCAAAGGAATTTCCTTCTTATTTTGTCCAACTCCTCTAGGGTTCCGTCTGGTAGCTTTAGTGATGTTAGGTGGTAGATGGGCTGCGCCGTGAGGACTGATTTCGTTAGGCAGATTCTAGCGGCGGCCGACATCATTTTGCCTTGCCAAGGAGCGAGACGCGCTCGGCACTTGTCCATTAAGGGTTGAATGTGGACCTTCTTGAGCCTTCCAACCACGAGGGGTAGGCCAAGGTATTTCATTGGGAAGTTTGTTAGGCCTGCTGGGAAGATCCCAATGATGTTGGAGAGATCAATGCTATCACACCAGATAGGGACAATTTGGCTTTTGTTGAGGTTTGTTCGGAGGCCCGTCACTTGCCCAAAATCGCTTAGAAAGCCAGTGAGATTTGTCATGTCTTGGACACTTGGGTTCACGAATATGGCCGCATCATCTGCATAGAGGGAGGTTCGGAATCTGGGAGCTCTTCCGCGAAGAGGGGACATGTGTCCTAATTCTGTTGCTTTCTCTAGAAGGTGGTGGAGTGGGTCGATGGCTAAAATAAATAGCAGCGGCGAGAGGGGGTCACTCTACCGGAGGCCTCTTCCATGCTTTATAGGCGATCTTGGGCATCCATTGAGGAGGACCCTTGTTGTCGACGAGGCTAGGATGTTTGAGACTTAGTTAGTCCACCGAGATGTGAAGCCTTTTCTCTGGAGGAGGCCGATTAAGTAATCCCATCTAACCGAATCAAAAGTTTTGGTTATGTCGAGCTTCAACAGAAGAGTCGGCGTTCTTGTTTGGTGGAATTTTCTTGTCAGATTCCTCACATACATAAAGTTGTCATGTATGCATCTTTTCTTTATGAAAGCACTCTGGGCGTGACTAATCAGGATCCCCATGTGAGGCTGCAGGCGCAGTGCAAGTACCTTTGAAATTAGCTTCCCAACTCCATGTATGAGACTGATAGGCCTGTAGTCTCCTACGCATTCTGCTCCCTCCTTTTTCGGGATGAGCACCACGTTTGCTGAATTGAGGATCGGGAAGTTATTACTTCGTAGCCGGTCAAAGGAATGAATGACCGCCAT
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| CDS seq | ATGGCGGTCATTCATTCCTTTGACCGGCTACGAAGTAATAACTTCCCGATCCTCAATTCAGCAAACGTGGTGCTCATCCCGAAAAAGGAGGGAGCAGAATGCGTAGGAGACTACAGGCCTATCAGTCTCATACATGGAGTTGGGAAGCTAATTTCAAAGAAAGCAACAGAATTAGGACACATGTCCCCTCTTCGCGGAAGAGCTCCCAGATTCCGAACCTCCCTCTATGCAGATGATGCGGCCATATTCGTGAACCCAAGTGTCCAAGACATGACAAATCTCACTGGCTTTCTAAGCGATTTTGGGCAAGTGACGGGCCTCCGAACAAACCTCAACAAAAGCCAAATTGTCCCTATCTGGTGTGATAGCATTGATCTCTCCAACATCATTGGGATCTTCCCAGCAGGCCTAACAAACTTCCCAATGAAATACCTTGGCCTACCCCTCGTGGTTGGAAGGCTCAAGAAGGTCCACATTCAACCCTTAATGGACAAGTGCCGAGCGCGTCTCGCTCCTTGGCAAGGCAAAATGATGTCGGCCGCCGCTAGAATCTGCCTAACGAAATCAGTCCTCACGGCGCAGCCCATCTACCACCTAACATCACTAAAGCTACCAGACGGAACCCTAGAGGAGTTGGACAAAATAAGAAGGAAATTCCTTTGGGCAAGGGGCGAAAACATCTCGGGGGGAAAATGTAAAGTCAACTGGAAAAGGCTAGACAAGAACCTCTTCGCGGCCGCAACAACAATAACGGTGGGAGATGGCAAAATTGCACGCTTTTGGAGCTCAAAATGGCTAGACAATCAAACACCACAATTGATTGCCCTAGATATTTTCGTGGCCTCTAGAAGAAAGAATACGACTGTGCATGATGCCTTAGCAGAAAACAAGTGGATACGAGATATTGATGTCTCTCGCATCTTCGAGGCGAATCACCTCCAACAGTATGTCCGCCTCTGGAGAATGATCAGAGATATGAGGCCTCTAAGCGAAAACCACGACAGCATCCGATGGAACCTCACAGCAAATGGGCAGTACTCGGCAAAATCGGCCTATCGACTACAATTCCTTGGGGCTGCTAAATCTACCTTCTATCAGTCAATCTGGAAGGCATGGGCGCCGCCGAAGTGCAAACTCACAAAGAGGATATGGGCAGAAATGCAGAGATGGACTGGGACTGACCTTCAGATGGACAACTGGGAAAGCTGTCACTCAGTCGAGCAATGGTGGACACTCGTAACGGAATCTCCAAACACCCCACGCAAGCCTCTCAGGACCCTGGTGATTTTAATCTCGTGGGAAATTTGGTGCGAAAGAAACGCAAGAATCTTCCGCAGCAATGCATCTACGCCATCCTCAATTCTAGCAAAGATCAAGGAGGAAGGGAGAGCATGGGTCAAAGCAGGGGTTTCAATCCTGTAG
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| Protein seq | MAVIHSFDRLRSNNFPILNSANVVLIPKKEGAECVGDYRPISLIHGVGKLISKKATELGHMSPLRGRAPRFRTSLYADDAAIFVNPSVQDMTNLTGFLSDFGQVTGLRTNLNKSQIVPIWCDSIDLSNIIGIFPAGLTNFPMKYLGLPLVVGRLKKVHIQPLMDKCRARLAPWQGKMMSAAARICLTKSVLTAQPIYHLTSLKLPDGTLEELDKIRRKFLWARGENISGGKCKVNWKRLDKNLFAAATTITVGDGKIARFWSSKWLDNQTPQLIALDIFVASRRKNTTVHDALAENKWIRDIDVSRIFEANHLQQYVRLWRMIRDMRPLSENHDSIRWNLTANGQYSAKSAYRLQFLGAAKSTFYQSIWKAWAPPKCKLTKRIWAEMQRWTGTDLQMDNWESCHSVEQWWTLVTESPNTPRKPLRTLVILISWEIWCERNARIFRSNASTPSSILAKIKEEGRAWVKAGVSIL |
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| Function | LINE-1 retrotransposable element ORF2 protein [UniProtKB/Swiss-Prot:O00370] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_09G0314200 | OsZS97_09T0314200.1 | Chr09 | 19200059 | 19202160 | - | makerRMon | ||
| CDS seq | ATGGCGGTCATTCATTCCTTTGACCGGCTACGAAGTAATAACTTCCCGATCCTCAATTCAGCAAACGTGGTGCTCATCCCGAAAAAGGAGGGAGCAGAATGCGTAGGAGACTACAGGCCTATCAGTCTCATACATGGAGTTGGGAAGCTAATTTCAAAGAAAGCAACAGAATTAGGACACATGTCCCCTCTTCGCGGAAGAGCTCCCAGATTCCGAACCTCCCTCTATGCAGATGATGCGGCCATATTCGTGAACCCAAGTGTCCAAGACATGACAAATCTCACTGGCTTTCTAAGCGATTTTGGGCAAGTGACGGGCCTCCGAACAAACCTCAACAAAAGCCAAATTGTCCCTATCTGGTGTGATAGCATTGATCTCTCCAACATCATTGGGATCTTCCCAGCAGGCCTAACAAACTTCCCAATGAAATACCTTGGCCTACCCCTCGTGGTTGGAAGGCTCAAGAAGGTCCACATTCAACCCTTAATGGACAAGTGCCGAGCGCGTCTCGCTCCTTGGCAAGGCAAAATGATGTCGGCCGCCGCTAGAATCTGCCTAACGAAATCAGTCCTCACGGCGCAGCCCATCTACCACCTAACATCACTAAAGCTACCAGACGGAACCCTAGAGGAGTTGGACAAAATAAGAAGGAAATTCCTTTGGGCAAGGGGCGAAAACATCTCGGGGGGAAAATGTAAAGTCAACTGGAAAAGGCTAGACAAGAACCTCTTCGCGGCCGCAACAACAATAACGGTGGGAGATGGCAAAATTGCACGCTTTTGGAGCTCAAAATGGCTAGACAATCAAACACCACAATTGATTGCCCTAGATATTTTCGTGGCCTCTAGAAGAAAGAATACGACTGTGCATGATGCCTTAGCAGAAAACAAGTGGATACGAGATATTGATGTCTCTCGCATCTTCGAGGCGAATCACCTCCAACAGTATGTCCGCCTCTGGAGAATGATCAGAGATATGAGGCCTCTAAGCGAAAACCACGACAGCATCCGATGGAACCTCACAGCAAATGGGCAGTACTCGGCAAAATCGGCCTATCGACTACAATTCCTTGGGGCTGCTAAATCTACCTTCTATCAGTCAATCTGGAAGGCATGGGCGCCGCCGAAGTGCAAACTCACAAAGAGGATATGGGCAGAAATGCAGAGATGGACTGGGACTGACCTTCAGATGGACAACTGGGAAAGCTGTCACTCAGTCGAGCAATGGTGGACACTCGTAACGGAATCTCCAAACACCCCACGCAAGCCTCTCAGGACCCTGGTGATTTTAATCTCGTGGGAAATTTGGTGCGAAAGAAACGCAAGAATCTTCCGCAGCAATGCATCTACGCCATCCTCAATTCTAGCAAAGATCAAGGAGGAAGGGAGAGCATGGGTCAAAGCAGGGGTTTCAATCCTGTAG
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| Protein seq | MAVIHSFDRLRSNNFPILNSANVVLIPKKEGAECVGDYRPISLIHGVGKLISKKATELGHMSPLRGRAPRFRTSLYADDAAIFVNPSVQDMTNLTGFLSDFGQVTGLRTNLNKSQIVPIWCDSIDLSNIIGIFPAGLTNFPMKYLGLPLVVGRLKKVHIQPLMDKCRARLAPWQGKMMSAAARICLTKSVLTAQPIYHLTSLKLPDGTLEELDKIRRKFLWARGENISGGKCKVNWKRLDKNLFAAATTITVGDGKIARFWSSKWLDNQTPQLIALDIFVASRRKNTTVHDALAENKWIRDIDVSRIFEANHLQQYVRLWRMIRDMRPLSENHDSIRWNLTANGQYSAKSAYRLQFLGAAKSTFYQSIWKAWAPPKCKLTKRIWAEMQRWTGTDLQMDNWESCHSVEQWWTLVTESPNTPRKPLRTLVILISWEIWCERNARIFRSNASTPSSILAKIKEEGRAWVKAGVSIL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0545250 | SBH | 0.0 | 0.0 | 1.397463 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g32490 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0545250 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0018490 | SBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0018770 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0018530 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0018730 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0324600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0018490 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0018610 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0018370 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0018350 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0018350 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0018480 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G018870 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0018730 | SBH | 0.0 | 0.0 | 0.0 |
