Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_07G0382900 | OGI:07063420 | 3/50 | Zhenshan 97 | ZS97RS3 | HZAU | Chr07:23986940-23988079 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | Lemont_ZS97RS3_DEL0705290,Lemont_ZS97RS3_DEL0728840,Lemont_ZS97RS3_DEL0746170,Lemont_ZS97RS3_TRA0749980,Basmati1_ZS97RS3_TRA0729210,132278_ZS97RS3_DEL0726770,132278_ZS97RS3_TRA0728700,132278_ZS97RS3_DEL0747160,132278_ZS97RS3_DEL0747710,J4155S_ZS97RS3_DEL0722990,J4155S_ZS97RS3_DEL0707840,J4155S_ZS97RS3_DEL0714320,J4155S_ZS97RS3_DEL0717060,J4155S_ZS97RS3_TRA0726080,NamRoo_ZS97RS3_DEL0724870,NamRoo_ZS97RS3_TRA0726920,NamRoo_ZS97RS3_DEL0748170,ZH11_ZS97RS3_DEL0705580,ZH11_ZS97RS3_DEL0748530,ZH11_ZS97RS3_DEL0749140,ZH11_ZS97RS3_DEL0751080,ZH11_ZS97RS3_DEL0751850,J4155_ZS97RS3_DEL0722350,J4155_ZS97RS3_DEL0707230,J4155_ZS97RS3_DEL0713470,J4155_ZS97RS3_DEL0716300,J4155_ZS97RS3_TRA0727270,Tumba_ZS97RS3_DEL0710910,IR64_ZS97RS3_TRA0719300,D62_ZS97RS3_DEL0707300,G8_ZS97RS3_DEL0703000,G8_ZS97RS3_DEL0711870,G8_ZS97RS3_DEL0719020,G8_ZS97RS3_DEL0719640,G8_ZS97RS3_DEL0721460,Y3551_ZS97RS3_DEL0708420,Y3551_ZS97RS3_DEL0720070,G630_ZS97RS3_INS0707590,DHX2_ZS97RS3_DEL0748400,DHX2_ZS97RS3_DEL0749030,DHX2_ZS97RS3_DEL0751000,DHX2_ZS97RS3_DEL0751770,127652_ZS97RS3_TRA0741490,Azucena_ZS97RS3_TRA0728380,Azucena_ZS97RS3_DEL0744850,Azucena_ZS97RS3_DEL0745430,Y58S_ZS97RS3_DEL0726270,Y58S_ZS97RS3_DEL0711620,Y58S_ZS97RS3_DEL0718520,Y58S_ZS97RS3_DEL0720300,Y58S_ZS97RS3_TRA0729470,HZ_ZS97RS3_DEL0731610,Kosh_ZS97RS3_DEL0705630,Kosh_ZS97RS3_DEL0749960,Kosh_ZS97RS3_DEL0750520,Kosh_ZS97RS3_DEL0752250,Kosh_ZS97RS3_DEL0753050,KY131_ZS97RS3_DEL0748080,KY131_ZS97RS3_DEL0748700,KY131_ZS97RS3_DEL0750560,KY131_ZS97RS3_DEL0751330,02428_ZS97RS3_DEL0725710,02428_ZS97RS3_DEL0746970,02428_ZS97RS3_DEL0747580,02428_ZS97RS3_DEL0749420,02428_ZS97RS3_DEL0750210,TM_ZS97RS3_INS0703530,LJ_ZS97RS3_TRA0749500,S548_ZS97RS3_DEL0723210,Nipponbare_ZS97RS3_DEL0705510,Nipponbare_ZS97RS3_DEL0747820,Nipponbare_ZS97RS3_DEL0748440,Nipponbare_ZS97RS3_DEL0750440,Nipponbare_ZS97RS3_DEL0751220,132424_ZS97RS3_DEL0721140,132424_ZS97RS3_TRA0721260,125827_ZS97RS3_DEL0711010,125827_ZS97RS3_DEL0719990,125827_ZS97RS3_DEL0746520,125827_ZS97RS3_DEL0746780,FH838_ZS97RS3_DEL0706000,FH838_ZS97RS3_DEL0721500,128077_ZS97RS3_DEL0728400,128077_ZS97RS3_DEL0746550,128077_ZS97RS3_DEL0748930,128077_ZS97RS3_DEL0749140,117425_ZS97RS3_TRA0702250,117425_ZS97RS3_DEL0728020,117425_ZS97RS3_DEL0728560,117425_ZS97RS3_DEL0747270,YX1_ZS97RS3_DEL0703180,YX1_ZS97RS3_DEL0726430,R527_ZS97RS3_DEL0712850,125619_ZS97RS3_TRA0739690,XL628S_ZS97RS3_DEL0707460,XL628S_ZS97RS3_DEL0713880,WSSM_ZS97RS3_DEL0728230,LK638S_ZS97RS3_DEL0707030,LK638S_ZS97RS3_DEL0713420,117534_ZS97RS3_TRA0733890,127564_ZS97RS3_DEL0714750,127564_ZS97RS3_TRA0723940,
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| DNA seq | ATGCACGAAGCCGAACTATACAAGAAAAGCCCTTCAGGAATTCTGCAGTGCTGCGTATCTTTAGAGGAAGGGAGACAATTGCTGAGAGACATACATTCTGGGATATGCGGAAACCATGCTGCTGCGCGCACCATTGTAGGCAAAGCTTACCGGCAGGGTTTTTTCTGGCCTACTGCAGTCTCCGACGCCGACAAGATTGTGCGCACATGCGAAGGTTGTCAATTTTTCGCCAGACAAACTCATCTACCAGCTCAAGAGTTGCAGACTATCCCGCTGTCTTGGCCGTTTGCGGTTTGGGGGCTCGACATGGTTGGCCCGTTCAAAAAGGCAGTCGGCGGTTACACGCACCTCTTTGTGGCCATTGACAAATTTTCCAAGTGGATCGAAGCTAAGCCTGTTGTCACGATTACAGCAGATAATGCTCGCGACTTCTTCATCAACATTGTGCACAGATTTGGAGTACCCAATCGGATCATCACCGATAATGGCACACAATTCACCGGCGGAGTTTTCAAAGACTTTTGTGAAGACTTTGGAATCAACATTTGCTATGCCTCAGTAGCACACCCAATGAGCAATGGACAGGTGGAGCGGGCCAACGGCATGATACTTCAAGGGATTAAAGCTCGAGTTTTTGACCGGCTTAAACCCTATGCCGGCAAATGGGTGTCACAGTTACCATCAGTACTTTGGTCTTTGCGTACTACACCTAGTCGGGCCACAGGCCAGTCACCTTTTTTCCTTGTCTACGGGGCAGAAGCAATGTTGCCGAGTGAAGTTGAATTCGAATCTTTGCGCTTTCGTAATTTCCGTGAAGAACGCTATGAAGACGACCGAGTGGACGACTTGCACCGACTGGAAGAGGTCCGCGAAGCAGCTTTGATTCAGTCAGCTCGGTACTTACAAGGGTTGCGACGTTATCATAATCGCAATGTTCGATCTCGTGCCTTTCTAGTCGGCGACCTGGTTTTACGGAAAATTCAAACCACACGAGATCGGCACAAGTTATCTCCTCTATGGGAAGGGCCATTTATTATCTCTGAGGTTACCCGGCCAGGTTCATATCGACTCAAGCGCGAAGACGGCACTCTCGTCGACAACTCTTGGAACATTGAACATCTTCATCGTTTTTACGCTTAA
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| CDS seq | ATGCACGAAGCCGAACTATACAAGAAAAGCCCTTCAGGAATTCTGCAGTGCTGCGTATCTTTAGAGGAAGGGAGACAATTGCTGAGAGACATACATTCTGGGATATGCGGAAACCATGCTGCTGCGCGCACCATTGTAGGCAAAGCTTACCGGCAGGGTTTTTTCTGGCCTACTGCAGTCTCCGACGCCGACAAGATTGTGCGCACATGCGAAGGTTGTCAATTTTTCGCCAGACAAACTCATCTACCAGCTCAAGAGTTGCAGACTATCCCGCTGTCTTGGCCGTTTGCGGTTTGGGGGCTCGACATGGTTGGCCCGTTCAAAAAGGCAGTCGGCGGTTACACGCACCTCTTTGTGGCCATTGACAAATTTTCCAAGTGGATCGAAGCTAAGCCTGTTGTCACGATTACAGCAGATAATGCTCGCGACTTCTTCATCAACATTGTGCACAGATTTGGAGTACCCAATCGGATCATCACCGATAATGGCACACAATTCACCGGCGGAGTTTTCAAAGACTTTTGTGAAGACTTTGGAATCAACATTTGCTATGCCTCAGTAGCACACCCAATGAGCAATGGACAGGTGGAGCGGGCCAACGGCATGATACTTCAAGGGATTAAAGCTCGAGTTTTTGACCGGCTTAAACCCTATGCCGGCAAATGGGTGTCACAGTTACCATCAGTACTTTGGTCTTTGCGTACTACACCTAGTCGGGCCACAGGCCAGTCACCTTTTTTCCTTGTCTACGGGGCAGAAGCAATGTTGCCGAGTGAAGTTGAATTCGAATCTTTGCGCTTTCGTAATTTCCGTGAAGAACGCTATGAAGACGACCGAGTGGACGACTTGCACCGACTGGAAGAGGTCCGCGAAGCAGCTTTGATTCAGTCAGCTCGGTACTTACAAGGGTTGCGACGTTATCATAATCGCAATGTTCGATCTCGTGCCTTTCTAGTCGGCGACCTGGTTTTACGGAAAATTCAAACCACACGAGATCGGCACAAGTTATCTCCTCTATGGGAAGGGCCATTTATTATCTCTGAGGTTACCCGGCCAGGTTCATATCGACTCAAGCGCGAAGACGGCACTCTCGTCGACAACTCTTGGAACATTGAACATCTTCATCGTTTTTACGCTTAA
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| Protein seq | MHEAELYKKSPSGILQCCVSLEEGRQLLRDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQTHLPAQELQTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFFINIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGINICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVSQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFREERYEDDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLHRFYA |
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| Function | Transposon Tf2-9 polyprotein [UniProtKB/Swiss-Prot:P0CT40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_07G0382900 | OsZS97_07T0382900.1 | Chr07 | 23986940 | 23988079 | + | makerRMon | ||
| CDS seq | ATGCACGAAGCCGAACTATACAAGAAAAGCCCTTCAGGAATTCTGCAGTGCTGCGTATCTTTAGAGGAAGGGAGACAATTGCTGAGAGACATACATTCTGGGATATGCGGAAACCATGCTGCTGCGCGCACCATTGTAGGCAAAGCTTACCGGCAGGGTTTTTTCTGGCCTACTGCAGTCTCCGACGCCGACAAGATTGTGCGCACATGCGAAGGTTGTCAATTTTTCGCCAGACAAACTCATCTACCAGCTCAAGAGTTGCAGACTATCCCGCTGTCTTGGCCGTTTGCGGTTTGGGGGCTCGACATGGTTGGCCCGTTCAAAAAGGCAGTCGGCGGTTACACGCACCTCTTTGTGGCCATTGACAAATTTTCCAAGTGGATCGAAGCTAAGCCTGTTGTCACGATTACAGCAGATAATGCTCGCGACTTCTTCATCAACATTGTGCACAGATTTGGAGTACCCAATCGGATCATCACCGATAATGGCACACAATTCACCGGCGGAGTTTTCAAAGACTTTTGTGAAGACTTTGGAATCAACATTTGCTATGCCTCAGTAGCACACCCAATGAGCAATGGACAGGTGGAGCGGGCCAACGGCATGATACTTCAAGGGATTAAAGCTCGAGTTTTTGACCGGCTTAAACCCTATGCCGGCAAATGGGTGTCACAGTTACCATCAGTACTTTGGTCTTTGCGTACTACACCTAGTCGGGCCACAGGCCAGTCACCTTTTTTCCTTGTCTACGGGGCAGAAGCAATGTTGCCGAGTGAAGTTGAATTCGAATCTTTGCGCTTTCGTAATTTCCGTGAAGAACGCTATGAAGACGACCGAGTGGACGACTTGCACCGACTGGAAGAGGTCCGCGAAGCAGCTTTGATTCAGTCAGCTCGGTACTTACAAGGGTTGCGACGTTATCATAATCGCAATGTTCGATCTCGTGCCTTTCTAGTCGGCGACCTGGTTTTACGGAAAATTCAAACCACACGAGATCGGCACAAGTTATCTCCTCTATGGGAAGGGCCATTTATTATCTCTGAGGTTACCCGGCCAGGTTCATATCGACTCAAGCGCGAAGACGGCACTCTCGTCGACAACTCTTGGAACATTGAACATCTTCATCGTTTTTACGCTTAA
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| Protein seq | MHEAELYKKSPSGILQCCVSLEEGRQLLRDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQTHLPAQELQTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFFINIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGINICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVSQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFREERYEDDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLHRFYA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g45680 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0370300 | RBH | 0 | 0.0035635 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0115100 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | R9311C07g26456 | SBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_04g0256100 | SBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_07g0279100 | SBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_07g0180600 | SBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_07g0171500 | SBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | NA | NA | NA | NA | NA |
| Os cB: Basmati1 | Basmati1 | SICAU | NA | NA | NA | NA | NA |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_019345 | SBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0725559600.01 | SBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0716763100.01 | SBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0719226000.01 | SBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0720468000.01 | SBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1020447700.01 | SBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1018935500.01 | SBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0712592900.01 | SBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1022263500.01 | SBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0208175000.01 | SBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0406394400.01 | SBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0719185600.01 | SBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0715817500.01 | SBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | NA | NA | NA | NA | NA |
| Os GJ-adm: LJ | LJ | SICAU | NA | NA | NA | NA | NA |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0719662700.01 | SBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0714833600.01 | SBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0407516900.01 | SBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0731808700.01 | SBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0203743100.01 | SBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0715768100.01 | SBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1022055300.01 | SBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0401509500.01 | SBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0514738800.01 | SBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | NA | NA | NA | NA | NA |
