Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsTumbaG0303943300.01 | OGI:03009170 | 49/50 | Os XI-3: Tumba | Tumba | SICAU | Chr03:3552400-3553646 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | |||||||||||
| DNA seq | TTCTTCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCCAGCGCGGCCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTGGTAAGAGCCGATTTCGGAGACGACACCATATATCAGGTTCTGCTTCCTCCCATTATATTCCATTTTTGATGCCTATCTTGTCACTTAGAGTGAAACACAAGTAGCAATGGGGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGGTGATGCCTATCTTCCGATTTTATCCTTTTTTCGTAGCATTACACCTGCTAACAAGTTTGGATTAAACACGAGCAGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGTGTTTATTAATTCTCATTAATTTCAGTTTTAGCTTTCAATGATTACAAAAGTTATATGAACTTGTGTATGTGAACTCTAAAAAAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGGTATGTAAAATGACTTTGTTGCTTCATGTAGTTTGTACTATGGCTAATCAACTTTTCTTGCAGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACACAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGCTGACCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTTTCCATTTCAAGGAGGTTGACGACGTTCTTGTTCTGAAGGTTCATGTTCTCAAGTAGTGTGGTGGATGAAAATCACCATTTTGTCTGGCAATATGTAATGCCATCCAAATTCGTATGATGTAAAGCTAGTTAAGACCTTATTATGTGGTTGACCTTTCCAGTACAATCTTATTATGTGCTAGTTAAGACTTGATTATGTGGGTCAACTATCTGTTAATGGATGCTTGTCAAGATGGAGGAACTATCTATGTGTTGTTGTGT
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| CDS seq | TCTTCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCCAGCGCGGCCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGAGTGAAACACAAGTAGCAATGGGGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGGTGATGCCTATCTTCCGATTTTATCCTTTTTTCGTAGCATTACACCTGCTAACAAGTTTGGATTAAACACGAGCAGAACAAGTACAAATTGA |
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| Protein seq | SSSSSALSSSFGTGGGQAVLGTAGASAARRCGRLHGCRRARGGTASSEQCSVPTRVAESETQVAMGDGNEVIDISSDSDDGDAYLPILSFFRSITPANKFGLNTSRTSTN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsTumbaG0303943300.01 | OsTumbaG0303943300.01.T03 | Chr03 | 3552400 | 3552831 | + | IGDBv1 | ||
| CDS seq | TCTTCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCCAGCGCGGCCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGAGTGAAACACAAGTAGCAATGGGGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGGTGATGCCTATCTTCCGATTTTATCCTTTTTTCGTAGCATTACACCTGCTAACAAGTTTGGATTAAACACGAGCAGAACAAGTACAAATTGA
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| Protein seq | SSSSSALSSSFGTGGGQAVLGTAGASAARRCGRLHGCRRARGGTASSEQCSVPTRVAESETQVAMGDGNEVIDISSDSDDGDAYLPILSFFRSITPANKFGLNTSRTSTN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0004870 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0004800 | RBH | 0.0 | 0.0 | 0.711965 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0004770 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0004810 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0055200 | RBH | 0.4458845 | 4.0689475 | 24.7284595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0004690 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0004790 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0004770 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0004750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0004790 | RBH | 0.0 | 0.0 | 0.347731 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0004770 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G004780 | RBH | 0.000000 | 0.000000 | 0.493248 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0004610 | RBH | 0.0 | 0.0 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | OsHZ_03g0049200 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_03g0047900 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | NA | NA | NA | NA | NA |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0304009700.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0310062100.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0309261500.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0309742100.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0304436500.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0304018300.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0305291300.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0304472300.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0303964100.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0303983900.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0309518900.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0303996900.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0304007900.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0302689700.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0304038100.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | NA | NA | NA | NA | NA |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0304015100.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0312889500.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0305702100.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0303978500.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0304020500.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0304005100.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0305862700.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0304052700.01 | RBH | None | None | None |
