Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_06g0013710 | OGI:05034160 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr06:12361863-12363466 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgatggcgcggattgggggaggcgtggagtcgggcgatcaggcggagatcgggggcggcgagggcgcggaggagatcggcgaggaaggcgttgctagtgacgccggcgggagagatcgtcgtggactggtggacgacctggtgagagatgagagcggccggtgatggttaagggagggatgagagcgcgcggaggagatttgcgagggcgacggcgagggagcgtctggagaggcggccggcggccgtggctgccgaggaggcgatgcggtggtgaggtgaggaggcgacgccgggaggagggcgaaagtggaggatcaatccgatgcgaggtggaggcgcggaggagattggagagggcggcggcgatcgcgcgtctggtgaggaggccagcgggcgtggaggaggcgacgcggaggcggggcgaggaggcgacgcagagaggagggcgaacgacgcggcttgggggaaggaggagaggagcgatcgcgtgatggggaggagatcgacgccgttcgatatggcaatcggatggttgagattgcgcgtgtctgatacgtctgctatgtcaggaatcaagatcaccactacggattttttaagtagtaaagataggaaaatgcttctatacactcaggagtacgtactcctgctttcatccaccgtccatcagtaacccagccgattcagcccactagcgggtccagattcctaacccgttttgattattttttcgaaaatttattttctcgtaatacttataaatcaagccgcactaatcggatccgtcccgaattgctcgcattaatatcgctttcccagacggtggtgcttataaggaaatcggtggatcggggaggcgacggcgccgcgatccatcagcgactcaggaggctgcagcgttcaccagtggcggcgatggcatgcatgtccaggcgatgggccgagcgcggccgcggcgtctgcggtctgccggaggacaacaacaacgatccatcggcaatcctgtgcgcgcggccgtgcgtcaatggtgtcgagatgtctgcccgtgtcgccgttcggcgatatttgcccaggtgaggtgttgatccattgatcgtatctattcccaggcaacggtgtaatccttcatatttttctttgatttttcttctcgctgatcgagcgttttcttcctttttttcgtgtttcctgttaacttgtgaatttatgttttaggatgcgtagatttggggtcagagatgcattatttccaatgaattaactagttgaatgactaagccctcatgcaggtggtggacggcggagtgacatcacggtgcaatgggaaaatggctttgttcagagattgtcgttgcctcgttggatcgttaatctgtctgtagcagtagtttgagaatccggaatatttctcagggaaataatctttgtgattctcgttggtattctacttttttatttttaaagtatgggcggggtatatgtatgaattaaatagcgtatacttctagtattctgattatgattgtacattatttttaatcagcatacgcttcaatctgagtctaaattataacagctcattgatgcacttctttttcttc
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| CDS seq | atgatggcgcggattgggggaggcgtggagtcgggcgatcaggcggagatcgggggcggcgagggcgcggaggagatcggcgaggaaggcgttgctagtgacgccggcgggagagatcgtcgtggactggtggacgacctgacggtggtgcttataaggaaatcggtggatcggggaggcgacggcgccgcgatccatcagcgactcaggaggctgcagcgttcaccagtggcggcgatggcatgcatgtccaggcgatgggccgagcgcggccgcggcgtctgcggtctgccggaggacaacaacaacgatccatcggcaatcctgtgcgcgcggccgtgcgtcaatggtgtcgagatgtctgcccgtgtcgccgttcggcgatatttgcccagccctcatgcaggtggtggacggcggagtgacatcacggtgcaatgggaaaatggctttgttcagagattgtcgttgcctcgttggatcgttaatctgtctgtagcagtagtttga
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| Protein seq | MMARIGGGVESGDQAEIGGGEGAEEIGEEGVASDAGGRDRRGLVDDLTVVLIRKSVDRGGDGAAIHQRLRRLQRSPVAAMACMSRRWAERGRGVCGLPEDNNNDPSAILCARPCVNGVEMSARVAVRRYLPSPHAGGGRRSDITVQWENGFVQRLSLPRWIVNLSVAVV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_06g0013710 | OsPr106_06g0013710.01 | Chr06 | 12361863 | 12363258 | + | NAM | ||
| CDS seq | atgatggcgcggattgggggaggcgtggagtcgggcgatcaggcggagatcgggggcggcgagggcgcggaggagatcggcgaggaaggcgttgctagtgacgccggcgggagagatcgtcgtggactggtggacgacctgacggtggtgcttataaggaaatcggtggatcggggaggcgacggcgccgcgatccatcagcgactcaggaggctgcagcgttcaccagtggcggcgatggcatgcatgtccaggcgatgggccgagcgcggccgcggcgtctgcggtctgccggaggacaacaacaacgatccatcggcaatcctgtgcgcgcggccgtgcgtcaatggtgtcgagatgtctgcccgtgtcgccgttcggcgatatttgcccagccctcatgcaggtggtggacggcggagtgacatcacggtgcaatgggaaaatggctttgttcagagattgtcgttgcctcgttggatcgttaatctgtctgtagcagtagtttga
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| Protein seq | MMARIGGGVESGDQAEIGGGEGAEEIGEEGVASDAGGRDRRGLVDDLTVVLIRKSVDRGGDGAAIHQRLRRLQRSPVAAMACMSRRWAERGRGVCGLPEDNNNDPSAILCARPCVNGVEMSARVAVRRYLPSPHAGGGRRSDITVQWENGFVQRLSLPRWIVNLSVAVV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_06g0013710 | OsPr106_06g0013710.02 | Chr06 | 12362709 | 12363466 | + | IsoSeq | ||
| CDS seq | tggatcggggaggcgacggcgccgcgatccatcagcgactcaggaggctgcagcgttcaccagtggcggcgatggcatgcatgtccaggcgatgggccgagcgcggccgcggcgtctgcggtctgccggaggacaacaacaacgatccatcggcaatcctgtgcgcgcggccgtgcgtcaatggtgtcgagatgtctgcccgtgtcgccgttcggcgatatttgcccaggtggtggacggcggagtgacatcacggtgcaatgggaaaatggctttgttcagagattgtcgttgcctcgttggatcgttaatctgtctgtagcagta
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| Protein seq | WIGEATAPRSISDSGGCSVHQWRRWHACPGDGPSAAAASAVCRRTTTTIHRQSCARGRASMVSRCLPVSPFGDICPGGGRRSDITVQWENGFVQRLSLPRWIVNLSVAV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr06 | 12362938 | 12363155 | + | OsPr106_06g0013710.01 | OsPr106_06g0013710.02,OsPr106_06g0013710.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.931433 | 0.0 | 6.217356 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0010600 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0013480 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0022490 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0013590 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0206200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0013200 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0201500 | RBH | 0.0982675 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0013720 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0013660 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0013370 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0013970 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0013500 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G013380 | SBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0013670 | RBH | 0.0 | 0.0 | 3.366788 |
