Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_06g0008360 | OGI:06023520 | 9/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr06:6291920-6297808 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcataagtgccaccaatctcgttcaggcactaaactagtttcggggaggatggatggttgtcccttcttctcaatagaatccgatagacaagaatcgaaagctgcagatttttttattcctcaagtaagtcagttgatgattcaattccatcaaagatggcaagagcggggcatctagatcgattcgtttttaaggttgttataccgaataaaaagaattctgattctctgttgaggcaagctattcatcattaacaggaaagatcccaaagctgttattgcaaacatgggatagcctgactctacgctacaatctctattttcttatgatattgaatctggcttctattattcaatctctagttaccgtgggaaaagaaagagataagagctcttagtccgacaagacaagatatccctctaaaagcttcttcaatagcagtggatgaaattcatctgcacactgataattcaccaaaaacaatagtttctgtttccctagtttacctgccgcctctagatttcgtatccattccgtgatctggatctttaattgttggaaacttctcaagttcttctgccaagccttgattaatgaacctacaaaatccctcgaattggatctgactaaatccgggtattgtggacattccctcatttccattccggagcatcttaatcttaagtttcctgtttatcgaagaaaaattccattatcagctcactcttcatcaatccctacagatcgatctagcaattatggaatctatattctgtttactaaatcacatgaaattctcgggaactccacatacgtatttcatatatgtatttcatacatatgaatagagacaatttcaacgaaagttcgaatttgccaggggtccaaatggaatgaaaatgggtatataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggaggagctttcattgaagtagagggagcataaaaatatgtatttgctatgggactccggtttgataaaagtatagagcaggaaatagaggattttttcgcaagtaaaaatctggatacagtagcgcagagcccatacatagggcttattcgcgctgtagagcttttagagaaagagggagatggacctgccccagccaatgggaatgacgcagggagcccaggcccagcggggagtgaaaggctctcctcgtcgggctcatcggtaaaccaacctgagccgttgacacaggatttattggctgatgctgtgacctatgagagcccaaattatttatcagatgcggaaagcacaaattctttaggaccagtaactgatttggcgagccccttggatccattctccattcacccaataatggatcttcttatgggcaactattatttagcattcacaaatgaatcattgtctatggcggtaactgtagtttttttactacttcgagtttattttctatatatatgggtccgtgcagcatttccacgatatcgttatgatcaattaatgggacttagcgatgatccaaagctaaaagattaaaaaaaggcgagagcagcataatcgttagttaggggacgggcccgtatagaaagtcaatccttctttttccgatatgccgccccgcaagcaaggagtgccgcgcacgagcggagcgaaaactaagcaaggggaattccgtcattccatggaaagcatgcgaaatcctttgattgtttatagaatcaaaatcactatatagtctttcttgttccacttgcaaggcaaggaaaaaaaatgtcagtttcgttattacaaccttatttttttatgtcaaagacaaaaagctacgcgcaaattctcattggatctcggttgttcttaacagcgatggctattcatttaagtcttcgggtagcaccaccagatcttcaacaaggtggaaattctcgtatttcgtatgtacatgttcctgcggctcggatgagtatagttatttatatcgcgacagctataaacagttccttgttcccattaacaaaacatcccctttttcttcgctcttccggaaccggtacagaaattggtgctttttctactttgtttacgttagtgactgggggatttcggggaaggcctatgtggggtacctttcgggtgtgggatgctcgtttaacttctgtattcatcttgtttcttatttacctgggtgcactgcgttttcaaaagcttcctgtcgaaccggctcctatttcaatccgtgctggaccgatcgatataccaataataaagtctccagtcaactggtggaatacatcgcatcaacctgggagtattagccgatctggtacatcaatacatgttcctatgcccattccaatcttgtctaactttgctaacttccccttctctacccgtatcttgttcgttctggaaacacgtcttcctattccatcttttcccgaatctcccttaacggaagaaatagaagctcgagaaggaataccactaaaaacctagttcgctctcaaataaaaacctagttcactcgctaaagcatccatggctgaatggtgaaagcgcccaccaacctagaaaggaaaaataaatgggtcaaaaagtaggacgagattcagtaagtaattcagtgagtgctttcttcttttataagaagagcgtcggcttggaagaagaaaatgaaatacgaacaaccgcgctggtcgtaatagatcgacttgaatgcgtcttcttgctccagcattcaagttccatttcaagggaggacgacgtaccatgatactttcagttttgtcgagccctgctttggtctctggtttgatggttgtacgtgctaaaaatccggtacattccgttttgtttcccatcctagtcttttgcgacacagctggtttacttattttgttaggtctcgacttctccgctatgatctccccagtagttcatataggagctattgccgtttcattcctattcgtggttatgatgttcaatattcaaatagcggagattcacgaagaagtattgcgctatttaccagtgagtggtattattggactgatcttttggtgggaaatgttcttcattttagataatgaaaccattccattactaccaacccacagaaatacgacctctctgagatatacggtttatgccggaaaggtacgaagttggactaatttggaaacattgggcaatttactttatacctactattccgtctggtttttggtttctagtctgattttattagtagctatgattggagctatagtactgactatgcataggactacaaaggttcaaagacaggatgtattccgacgaaatgccttggattctaggaggactataatgaggaggacgacagaccaaatcacgatctactaaaaggagaaattgtggttcgagtccacgtcgtgagatggccagtgatctttagctggtcatggccataatgtgcttttcatcacgacctacaggcaacaccggcgagacccgggaaggtaacccgattgggagtcagaggatccatggtatgaattcctaaagcagttcaccgtgtattagcttcccccttgctttcctggcttggccactagcaagaacagcaaccgactctacttaataaactgctgccacttccggggaaaaactctaactcctaactcaaacctaactaacaaaatcggcaattcgtaatgctctcttcctttccagaccccttttcaggagcgcgcgtgactcgatgaaattccaagatcaaccattcccgaggtcgtggaatcctattaaagatgggagcatacggattgattcggatcaatatggaattgttacctcatgctcattatctattttccccttggttagtaataataggagcgatgcaaataatctatgcagcttcaacttctcttggccaacgcaatttcaaaaaaagaatagcctactcctccgtctctcacatgggtttcattattataggaattggttccatgctttttcatattgagaaattctgtctagtggcattcgatcacagaagccgttgacagcagcataaatcacaacaatttgtttttcaattggaagtggttcatattgtggttgtttgggcacttctgtaagccttgcacctctattgagtaatgcctgagtcgcagcatcaaggtctgacccaaattgagcgaaggcggccacttcgcgatattgtgccaattccagttttgaactaccgcagacttgtttcatagctttcaactgagcggcagacccgacgcgactgacggataagccaacgttaatagcaggtctaattccgcgataaaagagctctgtttccaaacagatttgtccatctgtaatggagatcacattggtggggatataggccgatacgtctccagcttgtgtttcaatcacgggtaacgcagtcaagctacctgcacctgtctggtccgatcgtttagcggctctttctaagagacgggaatgtaaatagaaaacatcccctgggaaagcctcacggcctggtggtcggcgtaacaataatgacatttgtcgatatgccaccgcctgtttacttagatcatcatatataattaatgcgtgcattccattatcgcggaaatattcccccatggcacaccctgaatatggggccagaaattgcagaggagcaggatccgaagcggtggctgctacaagaatggaatattccaaagcattcgcttctgaaagaatttgaactaattgtgccacagtcgagcgtttttgtccaatcgcaacatagacacaatacaatgtctcactctcatttgtgccccttgagttcatttgcttttggtttaatatagtatcgatagctattgctgtttttccagtttgtctgtccccgattataagttctcgttgaccacggcctataggaaccaggctatccactgcttttaagcctgtttgcatgggttcgtgcacagatttacgttcaataatccctggggctttcacttcgacacgtcttcgttcgtgatcgcttagagccccttttccatcaataggtactcccaaggcgtcgaccacacggcctaacatggcctttcccgcaggaacatccacaatagatccagtgcgcttgacaagatctccttctttaatagcggtatcactaccaaagacaacaatacctacattctcattctcaagattcaaggctattcctttcacaccgctggcaaattccaccatttctccagcttgaatctcgttcaatccataaacacgtgcaatcccatctccaactgagaccactcgaccgatctcatccacttgaaaattcgtgtaaaagttggtcattctactttctaatagagtcgtgagttccgcagctctgggtgagaattccatactttaacaaagacgatggatgagagaagggagaaatccgcttttcaaaaagccttagactgaacaccacacaatcactcactccactagatcataaatgccattatcgaatggggcagacactcccatgagctatttcaaccacttactaacacagggacaccaccattttaaagctgaactatgatcttctttcgtgcacatctcgctttttttttcatttatgcgaatgaattgcagaaccaaactaaaatgggttgatcggagctattctctagaatttaaaacttgagatgacttgcttgaaggaaatgcttacactgaagcctattaccctttctggcttatagggattagggagaagagaaccaattccagtgcctaggactcacattttcattttcctagtatggattcgtattacttaactagttagttatcttactagtctataaaacatgaactt
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| CDS seq | atggaattctcacccagagctgcggaactcacgactctattagaaagtagaatgaccaacttttacacgaattttcaagtggatgagatcggtcgagtggtctcagttggagatgggattgcacgtgtttatggattgaacgagattcaagctggagaaatggtggaatttgccagcggtgtgaaaggaatagccttgaatcttgagaatgagaatgtaggtattgttgtctttggtagtgataccgctattaaagaaggagatcttgtcaagcgcactggatctattgtggatgttcctgcgggaaaggccatgttaggccgtgtggtcgacgccttgggagtacctattgatggaaaaggggctctaagcgatcacgaacgaagacgtgtcgaagtgaaagccccagggattattgaacgtaaatctgtgcacgaacccatgcaaacaggcttaaaagcagtggatagcctggttcctataggccgtggtcaacgagaacttataatcggggacagacaaactggaaaaacagcaatagctatcgatactatattaaaccaaaagcaaatgaactcaaggggcacaaatgagagtgagacattgtattgtgtctatgttgcgattggacaaaaacgctcgactgtggcacaattagttcaaattctttcagaagcgaatgctttggaatattccattcttgtagcagccaccgcttcggatcctgctcctctgcaatttctggccccatattcagggtgtgccatgggggaatatttccgcgataatggaatgcacgcattaattatatatgatgatctaagtaaacaggcggtggcatatcgacaaatgtcattattgttacgccgaccaccaggccgtgaggctttcccaggggatgttttctatttacattcccgtctcttagaaagagccgctaaacgatcggaccagacaggtgcaggtagcttgactgcgttacccgtgattgaaacacaagctggagacgtatcggcctatatccccaccaatgtgatctccattacagatggacaaatctgtttggaaacagagctcttttatcgcggaattagacctgctattaacgttggcttatccgtcagtcgcgtcgggtctgccgctcagttgaaagctatgaaacaagtctgcggtagttcaaaactggaattggcacaatatcgcgaagtggccgccttcgctcaatttgggtcagaccttgatgctgcgactcaggcattactcaatagaggtgcaaggcttacagaagtgcccaaacaaccacaatatgaaccacttccaattgaaaaacaaattgttgtgatttatgctgctgtcaacggcttctctttcgattcttgtctatcggattctattgagaagaagggacaaccatccatcctccccgaaactagtttagtgcctgaacgagattggtggcacttatga
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| Protein seq | MEFSPRAAELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGKGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRGTNESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYEPLPIEKQIVVIYAAVNGFSFDSCLSDSIEKKGQPSILPETSLVPERDWWHL |
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| Function | ATP synthase subunit alpha, mitochondrial [UniProtKB/Swiss-Prot:P12862] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_06g0008360 | OsPr106_06g0008360.01 | Chr06 | 6291920 | 6297342 | - | NAM | ||
| CDS seq | atggaattctcacccagagctgcggaactcacgactctattagaaagtagaatgaccaacttttacacgaattttcaagtggatgagatcggtcgagtggtctcagttggagatgggattgcacgtgtttatggattgaacgagattcaagctggagaaatggtggaatttgccagcggtgtgaaaggaatagccttgaatcttgagaatgagaatgtaggtattgttgtctttggtagtgataccgctattaaagaaggagatcttgtcaagcgcactggatctattgtggatgttcctgcgggaaaggccatgttaggccgtgtggtcgacgccttgggagtacctattgatggaaaaggggctctaagcgatcacgaacgaagacgtgtcgaagtgaaagccccagggattattgaacgtaaatctgtgcacgaacccatgcaaacaggcttaaaagcagtggatagcctggttcctataggccgtggtcaacgagaacttataatcggggacagacaaactggaaaaacagcaatagctatcgatactatattaaaccaaaagcaaatgaactcaaggggcacaaatgagagtgagacattgtattgtgtctatgttgcgattggacaaaaacgctcgactgtggcacaattagttcaaattctttcagaagcgaatgctttggaatattccattcttgtagcagccaccgcttcggatcctgctcctctgcaatttctggccccatattcagggtgtgccatgggggaatatttccgcgataatggaatgcacgcattaattatatatgatgatctaagtaaacaggcggtggcatatcgacaaatgtcattattgttacgccgaccaccaggccgtgaggctttcccaggggatgttttctatttacattcccgtctcttagaaagagccgctaaacgatcggaccagacaggtgcaggtagcttgactgcgttacccgtgattgaaacacaagctggagacgtatcggcctatatccccaccaatgtgatctccattacagatggacaaatctgtttggaaacagagctcttttatcgcggaattagacctgctattaacgttggcttatccgtcagtcgcgtcgggtctgccgctcagttgaaagctatgaaacaagtctgcggtagttcaaaactggaattggcacaatatcgcgaagtggccgccttcgctcaatttgggtcagaccttgatgctgcgactcaggcattactcaatagaggtgcaaggcttacagaagtgcccaaacaaccacaatatgaaccacttccaattgaaaaacaaattgttgtgatttatgctgctgtcaacggcttctctttcgattcttgtctatcggattctattgagaagaagggacaaccatccatcctccccgaaactagtttagtgcctgaacgagattggtggcacttatga
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| Protein seq | MEFSPRAAELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGKGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRGTNESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYEPLPIEKQIVVIYAAVNGFSFDSCLSDSIEKKGQPSILPETSLVPERDWWHL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_06g0008360 | OsPr106_06g0008360.02 | Chr06 | 6296781 | 6297808 | - | IsoSeq | ||
| CDS seq | atgtgcacgaaagaagatcatagttcagctttaaaatggtggtgtccctgtgttagtaagtggttg |
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| Protein seq | MCTKEDHSSALKWWCPCVSKWL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 682.535339 | 4605.614258 | 3856.805176 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g08910 | SBH | 7.517565 | 6.988683 | 29.931499 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0019820 | SBH | 2.579736 | 57.189404 | 29.879988 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0002960 | SBH | 333.322998 | 8333.093750 | 4205.996094 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0019650 | SBH | 1.287378 | 7.595862 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0008340 | RBH | 294.795654 | 2244.665771 | 1643.344727 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0019560 | SBH | 2.397065 | 17.706615 | 15.728746 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0010580 | RBH | 21.339249 | 29.233963 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0010450 | RBH | 3.881464 | 175.446686 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0010460 | RBH | 252.811447 | 3151.609131 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0020890 | RBH | 1.571780 | 6.370550 | 4.618163 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0010350 | RBH | 2.148714 | 84.677292 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G002970 | SBH | 93.655075 | 1866.563477 | 1092.219482 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0003000 | SBH | 145.978699 | 4060.014893 | 2921.864502 |
