Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_02g0001390 | OGI:02003970 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr02:955476-957410 | ||||||||
| Gene Symbol | YR16, YR29, rNBS42 | ||||||||||
| DNA seq | atgcgagcgctcaaggagttggagttaatggatgtgcctattgtcgaagaattgccagttccttctctggaaaagttggtgttaattcaaatgcggagcctgcaaatttgcagtgggataacagcttcacctgtacaagtttcgacttcccaagtggatcaaaatgaatggatatctagtctccgtgaactcactatctatgattgctccagtttggtagtgtcccttcctattccgccctctcctcttatgtcttactcgtccatcaagagactttcagcatttccaacaatggagataaacaataggaagttcactattgaatctgacgagttgagtgaactggatggcaggatcttatcattccataatctgaagggtgttacatcgatctaccttcgaaggtgtccaaacttgactcgtatttcaactgaaggtttcaaccagctcatcactttagagtgtctggttatacaaaagtgtcctaatttgttccagctacagatctcagatcaggcaaataatacttcatctgctacaaacatccctgccctcccatctctcaaatctctcaccatttcatcatgtggcatagcaggtaggtggttaactcaaatgcttcatcatgttaactcccttgagaagttggacttatttgattgtccacagataaagtttctattaaccaatcaacctacagaaagggaagtaaccagcagtttggcttcagcagagataacctcagcaggggatgaacagcttctgcaaattccatgtagtctcctccattctctaatgtggctctccatttctgaatgtccagacctagagttttgtggtggcagtggtggctttgcaggattcacctctcttgtgcagctacagattaagaattgccccaagctggtctcagcattggtgagcgaaacaaatgataatggattactcccaatgtcacttcaagatcttagcctcagtcctctctcagtctcagaaaacttgcagtccttctcccctgaaggccttccctgcctaagaaggttaagcctatgtaggagccagcatttgaagtccatgcagcttcattcctgtacatccttggagtatctgaaaatctcgggatgccgatccctggttgtgttggagggcctcagctcccttcgaagattggacatccagatgaatcctgagctgtcagctgcatggcatctcaaactgcaagaacaagaacaaggtggcaatcaggctcaggtgtttcctccatcacttgttgaacttcacatctcaaatctcgaaggaagcatcagttcgcaatttctgtgtcttccttcagtaacaaaattagcagtgcgagatagtccagccttgaagtctattcagttgaaacactgcatgacactggaaaagctagagattatcaactgcaagttgcttgcttcaatcgaggatttccactcaattagaaaccttagatccttgaaggtacttggcacccgcagcttatcttcatatctgcagcaagaggcctctgggatgtggttccgactggaaagtctaatgattgatgatgcagctgtgctctctgtgcacttatgcatacagctcacatctctaagaatcctacaattctggtctatgggcatggcgagcctgacggaggaacaagagagagcactccagcttctcacctccctccgacaacttggtttctcgcggtgccagaagcttgagtcacttcctgcaaatctacgaagccttgacttcctcgaggtgctacgtatcgatgagtgccggagcatccgaaggttgccggagatgggcctcccgccttctctcagttaccttgatttgtacggctgctgcgaggagctctgtatgcaaggcagaatggcagaaacggagaagcttaaagttgagattatttacaaacagtga
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| CDS seq | atgcgagcgctcaaggagttggagttaatggatgtgcctattgtcgaagaattgccagttccttctctggaaaagttggtgttaattcaaatgcggagcctgcaaatttgcagtgggataacagcttcacctgtacaagtttcgacttcccaagtggatcaaaatgaatggatatctagtctccgtgaactcactatctatgattgctccagtttggtagtgtcccttcctattccgccctctcctcttatgtcttactcgtccatcaagagactttcagcatttccaacaatggagataaacaataggaagttcactattgaatctgacgagttgagtgaactggatggcaggatcttatcattccataatctgaagggtgttacatcgatctaccttcgaaggtgtccaaacttgactcgtatttcaactgaaggtttcaaccagctcatcactttagagtgtctggttatacaaaagtgtcctaatttgttccagctacagatctcagatcaggcaaataatacttcatctgctacaaacatccctgccctcccatctctcaaatctctcaccatttcatcatgtggcatagcagaaagggaagtaaccagcagtttggcttcagcagagataacctcagcaggggatgaacagcttctgcaaattccatgtagtctcctccattctctaatgtggctctccatttctgaatgtccagacctagagttttgtggtggcagtggtggctttgcaggattcacctctcttgtgcagctacagattaagaattgccccaagctggtctcagcattggtgagcgaaacaaatgataatggattactcccaatgtcacttcaagatcttagcctcagtcctctctcagtctcagaaaacttgcagtccttctcccctgaaggccttccctgcctaagaaggttaagcctatgtaggagccagcatttgaagtccatgcagcttcattcctgtacatccttggagtatctgaaaatctcgggatgccgatccctggttgtgttggagggcctcagctcccttcgaagattggacatccagatgaatcctgagctgtcagctgcatggcatctcaaactgcaagaacaagaacaaggtggcaatcaggctcaggtgtttcctccatcacttgttgaacttcacatctcaaatctcgaaggaagcatcagttcgcaatttctgtgtcttccttcagtaacaaaattagcagtgcgagatagtccagccttgaagtctattcagttgaaacactgcatgacactggaaaagctagagattatcaactgcaagttgcttgcttcaatcgaggatttccactcaattagaaaccttagatccttgaaggtacttggcacccgcagcttatcttcatatctgcagcaagaggcctctgggatgtggttccgactggaaagtctaatgattgatgatgcagctgtgctctctgtgcacttatgcatacagctcacatctctaagaatcctacaattctggtctatgggcatggcgagcctgacggaggaacaagagagagcactccagcttctcacctccctccgacaacttggtttctcgcggtgccagaagcttgagtcacttcctgcaaatctacgaagccttgacttcctcgaggtgctacgtatcgatgagtgccggagcatccgaaggttgccggagatgggcctcccgccttctctcagttaccttgatttgtacggctgctgcgaggagctctgtatgcaaggcagaatggcagaaacggagaagcttaaagttgagattatttacaaacagtga
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| Protein seq | MRALKELELMDVPIVEELPVPSLEKLVLIQMRSLQICSGITASPVQVSTSQVDQNEWISSLRELTIYDCSSLVVSLPIPPSPLMSYSSIKRLSAFPTMEINNRKFTIESDELSELDGRILSFHNLKGVTSIYLRRCPNLTRISTEGFNQLITLECLVIQKCPNLFQLQISDQANNTSSATNIPALPSLKSLTISSCGIAEREVTSSLASAEITSAGDEQLLQIPCSLLHSLMWLSISECPDLEFCGGSGGFAGFTSLVQLQIKNCPKLVSALVSETNDNGLLPMSLQDLSLSPLSVSENLQSFSPEGLPCLRRLSLCRSQHLKSMQLHSCTSLEYLKISGCRSLVVLEGLSSLRRLDIQMNPELSAAWHLKLQEQEQGGNQAQVFPPSLVELHISNLEGSISSQFLCLPSVTKLAVRDSPALKSIQLKHCMTLEKLEIINCKLLASIEDFHSIRNLRSLKVLGTRSLSSYLQQEASGMWFRLESLMIDDAAVLSVHLCIQLTSLRILQFWSMGMASLTEEQERALQLLTSLRQLGFSRCQKLESLPANLRSLDFLEVLRIDECRSIRRLPEMGLPPSLSYLDLYGCCEELCMQGRMAETEKLKVEIIYKQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_02g0001390 | OsPr106_02g0001390.01 | Chr02 | 955476 | 957410 | + | NAM | ||
| CDS seq | atgcgagcgctcaaggagttggagttaatggatgtgcctattgtcgaagaattgccagttccttctctggaaaagttggtgttaattcaaatgcggagcctgcaaatttgcagtgggataacagcttcacctgtacaagtttcgacttcccaagtggatcaaaatgaatggatatctagtctccgtgaactcactatctatgattgctccagtttggtagtgtcccttcctattccgccctctcctcttatgtcttactcgtccatcaagagactttcagcatttccaacaatggagataaacaataggaagttcactattgaatctgacgagttgagtgaactggatggcaggatcttatcattccataatctgaagggtgttacatcgatctaccttcgaaggtgtccaaacttgactcgtatttcaactgaaggtttcaaccagctcatcactttagagtgtctggttatacaaaagtgtcctaatttgttccagctacagatctcagatcaggcaaataatacttcatctgctacaaacatccctgccctcccatctctcaaatctctcaccatttcatcatgtggcatagcagaaagggaagtaaccagcagtttggcttcagcagagataacctcagcaggggatgaacagcttctgcaaattccatgtagtctcctccattctctaatgtggctctccatttctgaatgtccagacctagagttttgtggtggcagtggtggctttgcaggattcacctctcttgtgcagctacagattaagaattgccccaagctggtctcagcattggtgagcgaaacaaatgataatggattactcccaatgtcacttcaagatcttagcctcagtcctctctcagtctcagaaaacttgcagtccttctcccctgaaggccttccctgcctaagaaggttaagcctatgtaggagccagcatttgaagtccatgcagcttcattcctgtacatccttggagtatctgaaaatctcgggatgccgatccctggttgtgttggagggcctcagctcccttcgaagattggacatccagatgaatcctgagctgtcagctgcatggcatctcaaactgcaagaacaagaacaaggtggcaatcaggctcaggtgtttcctccatcacttgttgaacttcacatctcaaatctcgaaggaagcatcagttcgcaatttctgtgtcttccttcagtaacaaaattagcagtgcgagatagtccagccttgaagtctattcagttgaaacactgcatgacactggaaaagctagagattatcaactgcaagttgcttgcttcaatcgaggatttccactcaattagaaaccttagatccttgaaggtacttggcacccgcagcttatcttcatatctgcagcaagaggcctctgggatgtggttccgactggaaagtctaatgattgatgatgcagctgtgctctctgtgcacttatgcatacagctcacatctctaagaatcctacaattctggtctatgggcatggcgagcctgacggaggaacaagagagagcactccagcttctcacctccctccgacaacttggtttctcgcggtgccagaagcttgagtcacttcctgcaaatctacgaagccttgacttcctcgaggtgctacgtatcgatgagtgccggagcatccgaaggttgccggagatgggcctcccgccttctctcagttaccttgatttgtacggctgctgcgaggagctctgtatgcaaggcagaatggcagaaacggagaagcttaaagttgagattatttacaaacagtga
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| Protein seq | MRALKELELMDVPIVEELPVPSLEKLVLIQMRSLQICSGITASPVQVSTSQVDQNEWISSLRELTIYDCSSLVVSLPIPPSPLMSYSSIKRLSAFPTMEINNRKFTIESDELSELDGRILSFHNLKGVTSIYLRRCPNLTRISTEGFNQLITLECLVIQKCPNLFQLQISDQANNTSSATNIPALPSLKSLTISSCGIAEREVTSSLASAEITSAGDEQLLQIPCSLLHSLMWLSISECPDLEFCGGSGGFAGFTSLVQLQIKNCPKLVSALVSETNDNGLLPMSLQDLSLSPLSVSENLQSFSPEGLPCLRRLSLCRSQHLKSMQLHSCTSLEYLKISGCRSLVVLEGLSSLRRLDIQMNPELSAAWHLKLQEQEQGGNQAQVFPPSLVELHISNLEGSISSQFLCLPSVTKLAVRDSPALKSIQLKHCMTLEKLEIINCKLLASIEDFHSIRNLRSLKVLGTRSLSSYLQQEASGMWFRLESLMIDDAAVLSVHLCIQLTSLRILQFWSMGMASLTEEQERALQLLTSLRQLGFSRCQKLESLPANLRSLDFLEVLRIDECRSIRRLPEMGLPPSLSYLDLYGCCEELCMQGRMAETEKLKVEIIYKQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0118950 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g02660 | SBH | 0.0 | 0.0 | 0.049556 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0118950 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0001360 | RBH | 0.057419 | 1.909588 | 1.050987 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0001430 | RBH | 0.0 | 0.577390 | 0.595032 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0001380 | SBH | 0.356905 | 2.888408 | 3.344306 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0001350 | SBH | 0.004316 | 0.021780 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0001380 | RBH | 0.333875 | 1.036077 | 4.709218 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0016200 | SBH | 1.134152 | 3.6844715 | 3.4322085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0001360 | RBH | 0.000000 | 0.080012 | 0.468592 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0016700 | SBH | 0.8110225 | 2.084876 | 5.635476 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0001360 | SBH | 0.016734 | 0.160614 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0001320 | RBH | 0.038255 | 3.812130 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0001370 | SBH | 0.000000 | 6.383474 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0001440 | RBH | 0.193939 | 0.449267 | 0.191911 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0001420 | RBH | 0.080828 | 1.157726 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G001390 | SBH | 0.660084 | 0.434586 | 1.179133 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0001360 | RBH | 0.099010 | 5.477331 | 2.697330 |
