Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_01g0023200 | OGI:01073440 | 2/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr01:24579186-24582526 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaatgacaatttgacgggtggggcaagatggaatttcagtatttcacattacaggacaccaaaatggcaatcgagagatcgagcaaattattgaagcagtgttgcaacgatgtgctcgtcttggctgacatccagcactagaaagactttccataaacaaaattgtgaaaaggcaggaggtatctttgtcatttcgacaagcatcagctaacagtgtattttataaaccaggtcttaatcagaactcttctagaccttatagccggttatggtgaatcctctgccaacaatctcgcctacgcagaaccacgcataaagctcaactccaaataatgtcacaattccaaggtcctctaccttgagctcctttctattcttccatacctgcttgacaccatcaaattccttccaaaatgcctcatagcggcctggcaaactgaagaaaacaacagccatataagtcattgagatcagagctccaaagtaaacaagcatagtaacgaaggcatattcacaatgcagaatcgatgacttgacttgttcaagaaaatatggcagacaccccccccccaccccccccccccAaaaaaaaaagaaaaagaaaaaaaggttaaaagcacaatgctccacccaagttgatacacattcataaatacatgcacaattgctttgcctatcaagtgcagaccttgcaacttctccatccaacaatccacaacaagcacgtgactggtccctatgcatatgcatctaacatgacatcttaattaatcattcaaagttaagagtaaacaaatccagtttacccaaagttcgtcaatccgttcatttccctcatgataggtagacatgggcaccggcaaatcacagaagatgtgtcccgtccatctcattgtctcatgcatgctctttggaccagcctgaattgaccagtatagtttcaacctggtgagccctaattctaacatcacagcagaagatggtcaaaaggtacaccatctgctacagtattggagatagtgccttgattaagagccctaatgaaaaaaaatggaaacaacatacaaaattctaatgcaaaaacgtgtaaaaataaaaataatagctgctcctgaccaacctcaaaacatttcaacatcaatttataacacgtgaagaaattgctcagccttaatttaacagacgtgattgctagccagaattatcaatcatgacttgaaacattgcagacaagatactaactaaatcgcatgttattggttgcacatcatgtatacaacaaagttctgtaaaccagactgatcagtgatcactgacctagccagtttgttctgtcatcagctcccacactgaacaacaccactcatcaaaccatgtacacaaacaaggattagcatcattatacagcaatcagaaaaaacaatgttcgtcacaataataaagcaggctaaagtgcggccactggattgggattcaagaaataacttttccgtgataaagcctaatattgcatccacacttgaattgttgtcactttttttattctaaacacagctggttgccaagtgaaaaagaatagaagactgaggcccagaaaagcattcatcttatcctacagatttatgacagagctgtacctctataacattctcagaacagacaatggactaatgtagattttgtattatagttcatagtaattaggtaaatcccataaagtaaattggtaatagattttactgcaatgccttttctgcagaaacaaacaaacaagaaataatttcaaacatactgaacaaactgctaatgtaattaccacagcaatattgatataagttcatttcttaaatcatacaaaatgcataccattccattttgtcaatatgtatcatccacaatagatttcacatttcactcggtgtatttgacttctcacactttcgcctaacagtaatgcatcgttctatgtcttcatgaaccatggatccaagcaaaaatacaaaggtaacaaggaatatacagtaagagcctcaggtatatcatacttattgcataggtttcttttgttacaaactttcaaaactgacagattatgggtcttacagaactcagtgcctgcatgaccagatgaaatgcactcctaataagtagttccataattaatactgtgcctatcctctttcaccaaattattgagcatagcaagtctgaccaaaacaatgtactagcaggtagcgtatttcaaggagaacatcacgcatcccacaggccaaaacattcaaacagcctcataacacatggttacgagctctccgaagtttatacatgcaacaagttacacaagcacaattcataaagggaggagcgtgtgaacaaatggtcaactcaaatgattaagatttataaagtgcaagtatggaagggagctctcaaacccctaataggtcatgacaacaacaaaagcacaagtgcacaaccagactaccagacaacaaaaaaaaaaacccatcgtctagcgaaatctactaaccactatgtaggctcaccctgactacccaaattgcagaccatgagcagagcaagccataccaaattcaggttaaactagagtaatcggaggcacgataatttggatacccaccaattattggcgaattttcgatcgtgccaagctacattcgtcggaacacccaagcctgaacacccccccccccccccggcgcgcaattgccaacagatcgcaacacaccgccaactacgaaacagcgaccaaatggagccgcatgaacaggcacagcgggggtgaaatccggggatcacctggcgaggcgggtgtagaagagctgcttggagagctcctggcacttctccacggtgggtggctgcaccacgtgctgcttgttcttctccatcacctccttgtagtaggcgcacccgtgcttcgacacgagctccgacgcctgcgccgccttggaccgtagctgcgccagcctcgacgccatcgcctggagacacacacacccacacccaccaaccaaacccaacaccacaccacacacgcggatggaaaagagagaaaccgagtcagatcgaacggggaaagcagatctggccgccgcgccgatccgggactcggaagggccagcgagcggcgggcggatcggaggggctaaggttttgggggggagtgattgctaccgtgggtgaagcgccggggaggggagaggagaggtcgcgaggtggatgggggatccggggcgaggtgaggtgaggaggaggaggacggcgagatgggtgcggggggatgggaggagaggggaaaacggtgggtggggtggtgt
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| CDS seq | tccacctcgcgacctctcctctcccctccccggcgcttcacccacggcgatggcgtcgaggctggcgcagctacggtccaaggcggcgcaggcgtcggagctcgtgtcgaagcacgggtgcgcctactacaaggaggtgatggagaagaacaagcagcacgtggtgcagccacccaccgtggagaagtgccaggagctctccaagcagctcttctacacccgcctcgccagtttgccaggccg |
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| Protein seq | STSRPLLSPPRRFTHGDGVEAGAATVQGGAGVGARVEARVRLLQGGDGEEQAARGAATHRGEVPGALQAALLHPPRQFARP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_01g0023200 | OsPr106_01g0023200.01 | Chr01 | 24581828 | 24582526 | - | NAM | ||
| CDS seq | atggcgtcgaggctggcgcagctacggtccaaggcggcgcaggcgtcggagctcgtgtcgaagcacgggtgcgcctactacaaggaggtgatggagaagaacaagcagcacgtggtgcagccacccaccgtggagaagtgccaggagctctccaagcagctcttctacacccgcctcgccaggtga |
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| Protein seq | MASRLAQLRSKAAQASELVSKHGCAYYKEVMEKNKQHVVQPPTVEKCQELSKQLFYTRLAR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_01g0023200 | OsPr106_01g0023200.02 | Chr01 | 24579186 | 24582430 | - | IsoSeq | ||
| CDS seq | tccacctcgcgacctctcctctcccctccccggcgcttcacccacggcgatggcgtcgaggctggcgcagctacggtccaaggcggcgcaggcgtcggagctcgtgtcgaagcacgggtgcgcctactacaaggaggtgatggagaagaacaagcagcacgtggtgcagccacccaccgtggagaagtgccaggagctctccaagcagctcttctacacccgcctcgccagtttgccaggccg
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| Protein seq | STSRPLLSPPRRFTHGDGVEAGAATVQGGAGVGARVEARVRLLQGGDGEEQAARGAATHRGEVPGALQAALLHPPRQFARP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 13.331026 | 143.308258 | 77.160049 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0023341 | RBH | 8.040780 | 85.768074 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
