Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0227600 | OGI:11077160 | 9/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:6695391-6698883 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAATCAGATGATGTTCTTGCCTGATATTCTTAATTGTTAGCATATCACATAAAAGACTGACTCCATGTTTCTGTTCTTCAGCACTGATGGCGGAGGCAGTAATCCTTGCCATCTCAAAGATCGGTACCACTTTAGGAGAAGAAGCCACCAAGGCTGTTCTAGCGAAACTGTCTGAAAAAGTAACAAACTTGAAAAATCTGCCAAGGAATGTTAAAGATCTAATGAAATGGTCTCTTTCGGCAGAGCTCATGAGTCCAAAAACACCTTCTGATATTGAGAGACAAATATCTGGAGGCTGCCTGCCAGAATTTATTAAAGATGAAGACCTTGTGGGGGTTGAAGAAAATAGGAGAAAATTGACTGGATGGCTGTATTCCAATGAGCCGCATGGTACAGTGATAACAGTGTCCGGCATGGGTGGACTGGGAAAAACTACATTGGTAAAAAATGTGTACGACCGGGAAAAGGGAAACTTCCCTGCTCATGCTTGGATTGTTGTATCAAAGACCTACGATGTGGAAGAATTGCTATGCACTCTACTTATGAAGGTTGCATACCGAGAGCAATCACCAGCTGCAAACATGAATAAAATGGATGTTTATGAGTTAACAGATAAAATAAAGAAAAAGTTAGAAGATAGCAAGTGCTTGATTGTACTGGATGATGTATGGGACCATGAAGCATACACTATGATGCGCAATGCATTCCAGAATCTCCAGGAAAGTCGGATTGTCATCACGACAAGGAAGGAAGAAGTGGCAGCTCTTGCATCCTCAAAATATCGCCTTGATCTCCAACCTTTAGGCAACACTGACTCATTCAATCTCTTCTGTAGAAGGGCTTTCCATGGTAGAACAGGCTGCCCCAAAGACCTTATGGAGGTGGCTACTTCTATAGTTAAGAGGTGTCAAGGTCTACCGCTAGCGATTGTATCTATGGGAAGCCTGTTGTCCTCAAGGAAACAAACAGAATATGCCTGGAATCAAACATATAGCCAACTTAGAAATGAGATGATAAAAAATGATCATGTCCGGGCGATCCTAAATCTGAGCTACCACGATATGCCAGGAGACCTAAGAAACTGCTTCTTGTATTGCAGCATGTTCCCTGAGGATTACTCCATGTCAAGGGAGAGCCTTGTGCGATTATGGGTTGCACAAGGCTTTGTAGTGAGAAAAGATGGTAACAAACCAGAGGATGTAGCTGAAGGAAATCTCATGGAACTCATTCACCGTAATATGTTGGAAGTTGTTGAGAATGATGAGCTCAGCAGGGTGAGTACCTGTAAGATGCATGACATTGTGCGCAACCTGGCTCTTGATGTTGCTAAAGAGGAGATGTTTGGCTCAGCAAGTGATAATGGCACAATGACGCAGCTGGATACAGAAGTTCGTCGCTTCTCAACATGTGGATGGAAAGATGATAGCGCACCAAGGGTGTCATTTCCGCACCTCCGAACTCTATTGTCCCTTCAAGCTGTTTCATCCTCCACCAGCATGCTGAACTCAATTTTTTCTCGATCAAACTACCTTAGTGTTCTCGAGCTGCAAGACTCTGAAATCAGTGAAGTGCCGACATCCATAGGTAATCTGTTTAATCTGCGGTACATTGGCTTAAGACGCACCAACGTATGTAAGCTCCCAGAATGCATTGAGAATCTCTCTAATCTGCAAACTTTAGATATCAAGCAAACCAAAATAGTGAAATTACCACGAGGAATTGTTAAGGTCAAGAAGTTGCGGCATCTTATAGCTGACAGATATGCTGATGAGAAACGGACAGAGTTCCGATACTTCATTGGAGTGGAAGCTCCTAAAGGGTTATCAGGTTTGGAAGAACTCCAGACTCTTGAAACTGTTCAAGCCAGCAAGGAATTAGCAGAACAGCTAGAGAAGCTGACGAAACTGCAAAACTTGTGGATTGATAATATCAGTGCTACTAATTGTGCAAAGATTTTTACTGCTCTGTCCAAGATGCCACTTCTTTCAAGCCTGCTTCTCTCTGCATGTGATGAGAAGGAGGTACTCTGATTCCAAAATCTCAATCCAATATCCAAGAAGTTCCATAGGCTAATTGTCAGAGGGCAGTGGGCCACTGGGACATTGGAATTGCCGATATTTCAGGAACATGGGAAAAATCTCAGGTACCTAGCTCTAAGTTGGTGTCAACTTGGAGAGGATCCACTTCGAGTGCTCGGGCTACATGTTCCAAACCTCACATACCTGAGACTTAACAGCATGATTAGTGCAAACAGGTTGATCATTACTGCAGGATCCTTTCCCAAGTTGAAGACAATTGTCTTGAAGCTCATGCCAAATGTCAACCGGCTGAAGATCGCAGATGATGCACTTCCAGTCATTGAAGGTTTATACAACGATTCACTGCCAGGGCTGGAGAGAGTCCCTGTGGGCATTGAAAATCTTTTCTCCCTGAAGAAACTCTGGCTCCTCAATCTGCATCAAGACTTCAAAGCAGATTGGATCCATAGAGAAATGCACCGGAAAATGCAGCATGTTCCAGATCTGCGTGTTTAGGAGTGGTGTGCTACATCTTCCTTCGATGAATAACTTGAAAAGTGCATCTGCATTCACCCAATCCTCTCTAAAAAGACATTGGCTCTGGTGTACTTGGTATCTGTACATCTGGTTCATATTTTTCTTCAACAAGTCATGAAATATCGACTCTCTTAGTCTCTTTGCCATCAGGAGTCACGACCTGAAGTTCCTTGGGTCTTTGCCTTGTGTTTCACTTCCAGTTCTTAAATCCGTTTCAGGCAGCGCAATGTTTAATATGAATAATGATCCTTTATTCCCATTTTGACATGGATTTATTACATAATGATCTCATAGCATCCTTTTATATATTGTTTGTTGGACGATAGCAGCAATACACTCCTCTGTAGGAAAGCAGGATTGCAACATCAAATTTCAGAGATAAAAACAGATCTAGCCTCCTAGCATTTCAAAGATATATACTTTGACAAACAAAAATTCGGTGAAACACTCAAGGCAATAATAAACAAACTTGTTGATAAAGCAGATGTGAAGTTTTATACTGAAACAGTATGAACAGTGAGCAGCCCTCAATATGACATGGCATGCTACCACTAAGGCACTAATGCATTGCTCTAGTACTGTATGAACTCTCTTTGTGTTGAAAGTGCCATATGTATTTTAGGGCATAAATCCCCACATGAACATGGAAGGAAGAACAGCATCTACAGAACTGAATTTTTTTTTTTTTGAGGTAGACAAAACTGAACTCGTTACGACATCAATATACCGCCTAACTCAAACATCTGAAACGCAACCAACGAATTAGGCTAGCTATCCTAGCAAATAATCCGGTAGATTGAATCGGTGAGTTACCAGGCGAATCTGGCCAGAAGCGGCGGCGCAGCGCAGCCCACCTCGCCGGCCGCCGGAGCGCCAGGGCGAGGTGGCGGATCTGATTCGCCAGCGGCGGCCACCGGACACCCCAGAAAACGCTCGCC
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| CDS seq | ATGCCGGACACTGTTATCACTGTACCATGCGGCTCATTGGAATACAGCCATCCAGTCAATTTTCTCCTATTTTCTTCAACCCCCACAAGGTCTTCATCTTTAATAAATTCTGGCAGGCAGCCTCCAGATATTTGTCTCTCAATATCAGAAGGTGTTTTTGGACTCATGAGCTCTGCCGAAAGAGACCATTTCATTAGATCTTTAACATTCCTTGGCAGATTTTTCAAGTTTGTTACTTTTTCAGACAGTTTCGCTAGAACAGCCTTGGTGGCTTCTTCTCCTAAAGTGGTACCGATCTTTGAGATGGCAAGGATTACTGCCTCCGCCATCAGTGCTGAAGAACAGAAACATGGAGTCAGTCTTTTATGTGATATGCTAACAATTAAGAATATCAGGCAAGAACATCATCTGATTG
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| Protein seq | MPDTVITVPCGSLEYSHPVNFLLFSSTPTRSSSLINSGRQPPDICLSISEGVFGLMSSAERDHFIRSLTFLGRFFKFVTFSDSFARTALVASSPKVVPIFEMARITASAISAEEQKHGVSLLCDMLTIKNIRQEHHLI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0227600 | OsNip_11t0227600-01 | Chr11 | 6695391 | 6698883 | - | RAP2018-11-26 | ||
| CDS seq | ATGCCGGACACTGTTATCACTGTACCATGCGGCTCATTGGAATACAGCCATCCAGTCAATTTTCTCCTATTTTCTTCAACCCCCACAAGGTCTTCATCTTTAATAAATTCTGGCAGGCAGCCTCCAGATATTTGTCTCTCAATATCAGAAGGTGTTTTTGGACTCATGAGCTCTGCCGAAAGAGACCATTTCATTAGATCTTTAACATTCCTTGGCAGATTTTTCAAGTTTGTTACTTTTTCAGACAGTTTCGCTAGAACAGCCTTGGTGGCTTCTTCTCCTAAAGTGGTACCGATCTTTGAGATGGCAAGGATTACTGCCTCCGCCATCAGTGCTGAAGAACAGAAACATGGAGTCAGTCTTTTATGTGATATGCTAACAATTAAGAATATCAGGCAAGAACATCATCTGATTG
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| Protein seq | MPDTVITVPCGSLEYSHPVNFLLFSSTPTRSSSLINSGRQPPDICLSISEGVFGLMSSAERDHFIRSLTFLGRFFKFVTFSDSFARTALVASSPKVVPIFEMARITASAISAEEQKHGVSLLCDMLTIKNIRQEHHLI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0227600 | OsNip_11t0227600-02 | Chr11 | 6695739 | 6698860 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCAAAGAGACTAAGAGAGTCGATATTTCATGACTTGTTGAAGAAAAATATGAACCAGATGTACAGATACCAAGTACACCAGAGCCAATGTCTTTTTAGAGAGGATTGGGTGAATGCAGATGCACTTTTCAAGTTATTCATCGAAGGAAGATGTAGCACACCACTCCTAAACACGCAGATCTGGAACATGCTGCATTTTCCGGTGCATTTCTCTATGGATCCAATCTGCTTTGAAGTCTTGATGCAGATTGAGGAGCCAGAGTTTCTTCAGGGAGAAAAGATTTTCAATGCCCACAGGGACTCTCTCCAGCCCTGGCAGTGA
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| Protein seq | MAKRLRESIFHDLLKKNMNQMYRYQVHQSQCLFREDWVNADALFKLFIEGRCSTPLLNTQIWNMLHFPVHFSMDPICFEVLMQIEEPEFLQGEKIFNAHRDSLQPWQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr11 | 6696077 | 6698286 | - | OsNip_11t0227600-02 | OsNip_11t0227600-02,OsNip_11t0227600-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 1.761706 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0229333 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0227600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008120 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007960 | RBH | 0.271532 | 1.963661 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007860 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008000 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008100 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007950 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0065150 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008070 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007930 | SBH | 0.000000 | 1.968122 | 0.000000 |
