Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0161800 | OGI:11009080 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:3023705-3025129 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGACATGCTCATCTCTGCAGTTGCAAGTGATCTTGTGAGCCGGTTCATCTCCTACCTGGTCCATAAATCTGAGAAGCAGCACACGACAACAGAGCAGGACCTGGAGAGGCTGAAGAGTGTTCTCCTAAGGATCTACACCATAGTTGAGGAGGCGGAGGCACGACAAATCAGGAACAGAGGAATGATCCTTCAACTCAAGGGTCTCATGGAAGGTATGTTTCTTGGGTATTATGTTCTTGACTCCTTCCAGTTCCAGTGTGTTGAAGAGGAGGGTGTAGATGAAGATCACCAGGTCAGTTGCAAGCGCCTTCGGTTCAGTACCTGCACAAGGAGCACTTCATTGTTATCACTCGGTACAGAGAACACACCTGTGCTTAAGAATGTTATTGAAAGTTTGGAGACCAAAATTTGTGATGTGAGGGAGCTTGTTGTGCTGCTAGCCAGTTGCCCTCGTCTTCCTCAGCAACCCTATTGCACATATCTGTTCATGGAAAAGAGTTTGTTTGGTCGCCATGTCGAGAAAGAGCAAGTAATCGACTTTATACTACATGATGATCAGAACCTGGCTGTCCTTCCTATCATTGGGCCTCACAGAATTGGGAAGAGAACCCTTGTCCATCATGCTTGTCAAGATGAACGGGTTCGTGGTCGCTTCCTGAATATTGTTTTCTTCCATGGTGATGATCTTGGAAACATTTCATTAATGCCTTCAACGAAATACTTGTGCATAGTTGAGTTCAGTTGGGATGTTGATGCGGAAGCATGGAAGATCTTTCGATCATCTATGAAGAAGGCAGCTATAAGTGGCAGTAAAGTCATTATCATAGGAAGAACAGATGAGATTGCCAAGTGGGGAACAACACCAGCAATCAGGTTGAACAGATTGTCACCAGAAATGTACTGGTACTACTTCAAGGCACTTTCTTTTGGAAGCATGAACCCTGACGACCATCCAAAGCTGGCTTCTCTAGGAATGCAACTGGCAACAGAACTACAGGGATCATTTCTTGGTGCAAACATACTTGGCCACATACTAAGGGGTAATCCAAGTGCTGAAATCTGGAGTGGGTTCTTGATGAGCTTGAGGATGTCACGAAAGCGCTTATCCATCTTCGAGGAGCATCCTCCTGAGAAGAACCACCCTTCTCATACAGCTGAAGTAGCGTTCATGAATTATCGAGGTTGTATGTTGTATGATCTTAGGGAGGCTGGCCATTTCCAGAGTGATATTCCCAGATTAACACCAGCAGGAGTAGAGCTAGAAGGCAAAATTCCTTGTGATTTGGGGTTTGATGTGCTGGTATGGAGATCTCAAATCCCGCCATTCTGCAACTACATAGCTACATTTTTGCAGCCAAAGCCCCGGCGCATTGTCAGAAGGAACAAGAATCCCCTGGCAGTTAGTATTACTTATCAATCATGA
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| CDS seq | ATGGACATGCTCATCTCTGCAGTTGCAAGTGATCTTGTGAGCCGGTTCATCTCCTACCTGGTCCATAAATCTGAGAAGCAGCACACGACAACAGAGCAGGACCTGGAGAGGCTGAAGAGTGTTCTCCTAAGGATCTACACCATAGTTGAGGAGGCGGAGGCACGACAAATCAGGAACAGAGGAATGATCCTTCAACTCAAGGGTCTCATGGAAGGTATGTTTCTTGGGTATTATGTTCTTGACTCCTTCCAGTTCCAGTGTGTTGAAGAGGAGGGTGTAGATGAAGATCACCAGGTCAGTTGCAAGCGCCTTCGGTTCAGTACCTGCACAAGGAGCACTTCATTGTTATCACTCGGTACAGAGAACACACCTGTGCTTAAGAATGTTATTGAAAGTTTGGAGACCAAAATTTGTGATGTGAGGGAGCTTGTTGTGCTGCTAGCCAGTTGCCCTCGTCTTCCTCAGCAACCCTATTGCACATATCTGTTCATGGAAAAGAGTTTGTTTGGTCGCCATGTCGAGAAAGAGCAAGTAATCGACTTTATACTACATGATGATCAGAACCTGGCTGTCCTTCCTATCATTGGGCCTCACAGAATTGGGAAGAGAACCCTTGTCCATCATGCTTGTCAAGATGAACGGGTTCGTGGTCGCTTCCTGAATATTGTTTTCTTCCATGGTGATGATCTTGGAAACATTTCATTAATGCCTTCAACGAAATACTTGTGCATAGTTGAGTTCAGTTGGGATGTTGATGCGGAAGCATGGAAGATCTTTCGATCATCTATGAAGAAGGCAGCTATAAGTGGCAGTAAAGTCATTATCATAGGAAGAACAGATGAGATTGCCAAGTGGGGAACAACACCAGCAATCAGGTTGAACAGATTGTCACCAGAAATGTACTGGTACTACTTCAAGGCACTTTCTTTTGGAAGCATGAACCCTGACGACCATCCAAAGCTGGCTTCTCTAGGAATGCAACTGGCAACAGAACTACAGGGATCATTTCTTGGTGCAAACATACTTGGCCACATACTAAGGGGTAATCCAAGTGCTGAAATCTGGAGTGGGTTCTTGATGAGCTTGAGGATGTCACGAAAGCGCTTATCCATCTTCGAGGAGCATCCTCCTGAGAAGAACCACCCTTCTCATACAGCTGAAGTAGCGTTCATGAATTATCGAGGTTGTATGTTGTATGATCTTAGGGAGGCTGGCCATTTCCAGAGTGATATTCCCAGATTAACACCAGCAGGAGTAGAGCTAGAAGGCAAAATTCCTTGTGATTTGGGGTTTGATGTGCTGGTATGGAGATCTCAAATCCCGCCATTCTGCAACTACATAGCTACATTTTTGCAGCCAAAGCCCCGGCGCATTGTCAGAAGGAACAAGAATCCCCTGGCAGTTAGTATTACTTATCAATCATGA
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| Protein seq | MDMLISAVASDLVSRFISYLVHKSEKQHTTTEQDLERLKSVLLRIYTIVEEAEARQIRNRGMILQLKGLMEGMFLGYYVLDSFQFQCVEEEGVDEDHQVSCKRLRFSTCTRSTSLLSLGTENTPVLKNVIESLETKICDVRELVVLLASCPRLPQQPYCTYLFMEKSLFGRHVEKEQVIDFILHDDQNLAVLPIIGPHRIGKRTLVHHACQDERVRGRFLNIVFFHGDDLGNISLMPSTKYLCIVEFSWDVDAEAWKIFRSSMKKAAISGSKVIIIGRTDEIAKWGTTPAIRLNRLSPEMYWYYFKALSFGSMNPDDHPKLASLGMQLATELQGSFLGANILGHILRGNPSAEIWSGFLMSLRMSRKRLSIFEEHPPEKNHPSHTAEVAFMNYRGCMLYDLREAGHFQSDIPRLTPAGVELEGKIPCDLGFDVLVWRSQIPPFCNYIATFLQPKPRRIVRRNKNPLAVSITYQS |
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| Function | Putative disease resistance protein RGA1 [UniProtKB/Swiss-Prot:Q7XA42] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0161800 | OsNip_11t0161800-00 | Chr11 | 3023705 | 3025129 | + | RAP2018-11-26 | ||
| CDS seq | ATGGACATGCTCATCTCTGCAGTTGCAAGTGATCTTGTGAGCCGGTTCATCTCCTACCTGGTCCATAAATCTGAGAAGCAGCACACGACAACAGAGCAGGACCTGGAGAGGCTGAAGAGTGTTCTCCTAAGGATCTACACCATAGTTGAGGAGGCGGAGGCACGACAAATCAGGAACAGAGGAATGATCCTTCAACTCAAGGGTCTCATGGAAGGTATGTTTCTTGGGTATTATGTTCTTGACTCCTTCCAGTTCCAGTGTGTTGAAGAGGAGGGTGTAGATGAAGATCACCAGGTCAGTTGCAAGCGCCTTCGGTTCAGTACCTGCACAAGGAGCACTTCATTGTTATCACTCGGTACAGAGAACACACCTGTGCTTAAGAATGTTATTGAAAGTTTGGAGACCAAAATTTGTGATGTGAGGGAGCTTGTTGTGCTGCTAGCCAGTTGCCCTCGTCTTCCTCAGCAACCCTATTGCACATATCTGTTCATGGAAAAGAGTTTGTTTGGTCGCCATGTCGAGAAAGAGCAAGTAATCGACTTTATACTACATGATGATCAGAACCTGGCTGTCCTTCCTATCATTGGGCCTCACAGAATTGGGAAGAGAACCCTTGTCCATCATGCTTGTCAAGATGAACGGGTTCGTGGTCGCTTCCTGAATATTGTTTTCTTCCATGGTGATGATCTTGGAAACATTTCATTAATGCCTTCAACGAAATACTTGTGCATAGTTGAGTTCAGTTGGGATGTTGATGCGGAAGCATGGAAGATCTTTCGATCATCTATGAAGAAGGCAGCTATAAGTGGCAGTAAAGTCATTATCATAGGAAGAACAGATGAGATTGCCAAGTGGGGAACAACACCAGCAATCAGGTTGAACAGATTGTCACCAGAAATGTACTGGTACTACTTCAAGGCACTTTCTTTTGGAAGCATGAACCCTGACGACCATCCAAAGCTGGCTTCTCTAGGAATGCAACTGGCAACAGAACTACAGGGATCATTTCTTGGTGCAAACATACTTGGCCACATACTAAGGGGTAATCCAAGTGCTGAAATCTGGAGTGGGTTCTTGATGAGCTTGAGGATGTCACGAAAGCGCTTATCCATCTTCGAGGAGCATCCTCCTGAGAAGAACCACCCTTCTCATACAGCTGAAGTAGCGTTCATGAATTATCGAGGTTGTATGTTGTATGATCTTAGGGAGGCTGGCCATTTCCAGAGTGATATTCCCAGATTAACACCAGCAGGAGTAGAGCTAGAAGGCAAAATTCCTTGTGATTTGGGGTTTGATGTGCTGGTATGGAGATCTCAAATCCCGCCATTCTGCAACTACATAGCTACATTTTTGCAGCCAAAGCCCCGGCGCATTGTCAGAAGGAACAAGAATCCCCTGGCAGTTAGTATTACTTATCAATCATGA
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| Protein seq | MDMLISAVASDLVSRFISYLVHKSEKQHTTTEQDLERLKSVLLRIYTIVEEAEARQIRNRGMILQLKGLMEGMFLGYYVLDSFQFQCVEEEGVDEDHQVSCKRLRFSTCTRSTSLLSLGTENTPVLKNVIESLETKICDVRELVVLLASCPRLPQQPYCTYLFMEKSLFGRHVEKEQVIDFILHDDQNLAVLPIIGPHRIGKRTLVHHACQDERVRGRFLNIVFFHGDDLGNISLMPSTKYLCIVEFSWDVDAEAWKIFRSSMKKAAISGSKVIIIGRTDEIAKWGTTPAIRLNRLSPEMYWYYFKALSFGSMNPDDHPKLASLGMQLATELQGSFLGANILGHILRGNPSAEIWSGFLMSLRMSRKRLSIFEEHPPEKNHPSHTAEVAFMNYRGCMLYDLREAGHFQSDIPRLTPAGVELEGKIPCDLGFDVLVWRSQIPPFCNYIATFLQPKPRRIVRRNKNPLAVSITYQS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.510583 | 1.084417 | 0.987248 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g06300 | RBH | 0.345283 | 0.729361 | 0.254137 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0161800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0004260 | RBH | 0.0 | 0.0 | 1.121487 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0004340 | RBH | 0.228334 | 0.0 | 0.189230 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0004250 | RBH | 0.591083 | 0.0 | 1.392352 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0004180 | RBH | 0.074279 | 0.041394 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0004160 | RBH | 2.512406 | 0.000000 | 1.503682 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0051900 | RBH | 0.84857 | 1.711899 | 0.677034 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0004250 | RBH | 0.130468 | 0.0 | 0.275716 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0053000 | RBH | 0.1980805 | 1.6732125 | 4.071739 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0004170 | RBH | 0.123556 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0004250 | RBH | 0.125881 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0004250 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0004150 | RBH | 0.0 | 0.0 | 0.161551 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004270 | RBH | 0.0 | 0.973101 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G004230 | RBH | 0.0 | 0.622093 | 0.249013 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0004210 | SBH | 0.311328 | 0.662633 | 1.232794 |
