Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0540100 | OGI:10064280 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:21058117-21061300 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGACAACCAATTCGGTACTTTTTTGTTAAGGAAAAAAAAAACCTAATATCAATTCGTTTCTTTTCAAATTAGAACACAAAGGTTGGCAGACAGTGAGATGAACCCTGTATGATTACACTGGACACACTAAATCCCACCACGAAATTAATGAATCTTTTATGAAAACACTGCCTTCATCCACCAACCAGATTATTACAGAATCTTGTGAAAGATAAAATGGTCTTCAGAGTTCAGACTCACCTGGGACCGAAACGGGCAATACCACTATACCAGTGGAAACAGAAACAGCATGTAACTACCATGGCTCACACATATGCACAGCAAACCAAACGCCGAATTTCTTCTGGCCACACCCGTAATAAGTCAACGGCGAAGAAACCTTTTTGCTTCCTCCCTGTCATATGCACAGTAGTTAAACACAGAAAAGACTAATCTGAGGCCCCAATCACCACTTCATCAGCACCAGACACCAAACTGCCAAATAGTTTTCTAAGGGCTTGTTGTTACCGGTGTAGCGTTGCGAACTGGCCATGCTGGATGCTGCTCCCACATGGGGCAGGTGCAGTGCAGCGGTCTTGGGTGATCATCCTACTGGGGAAAAAAGCAAGTGTCCTAGACCGCAAACCACTCCAACCAACGCGACCTGCGCGCAAAGTCCAACGTTATCACGATCTGTCTGGGCCACCACCACTTCCCCCCGCGAGATTCGTACCGATCACGGCGACGCGCGCGCCCCAGCGGGTAGGAAGCAAAAGCCTTTGCCGCCACCTCCCGGGTCGTTTTCGCCGCGACAGATGACGCCCGCGGCCGGGAATGGCGAAGGCGACGGGCACCGCACCACTACCACGCCGCCGGGTCCCCCGTGACGGACGGACGGACGTGGCCGCCTTGCGTGGCTGAACTTCTTCTGATGGTCCCCGCCTAGGGGGATCAGTTGGGTATACATACAGCAACACGCATCCTCTTGCCATGCTGGTTCTCGGTAGCCTGCACAACAAAAGCGGCAATAGCCAATAGGGGTTACAGTGAACTTATCTTGCTGCCTTGCTACCTAAGTACTATGTAAATAGTGGGTGGTCTCGCTGGTGGTCAAAATTCAGATGAAACTGCTACCTTCATCACCAGTAATCTCTGCAGGAGCAGACTCCGTCTTTGAAATGGTGGAAGCGTTTGGCGTCTCGCACTACGATCTCCCGGTCCGCGATCTTCGAGATGTACTTGATGGCATCATGGCAATCACCACAGACCCTGAGGTTCTTTATGATCACAAGCCTTGTTCCTGGGCCTGTGTTCAGCAAACCGAAGGCGATGGCCAGCCTCTCGCTGTGGTAGCTGAGCTGCTGTTCCTTCACTTCCTCCTCCAGATCGTGGTACACAAACTCTGTTCTCGGAATGTAGCCCATCTTCCTCATCTCTAAATCAAGCTTTGCCACCTTACTTACGATCTCTTCACGCTGAGGATGGCTCTGGTCTTCCATCACGAACACGTGGCGTGTTCCGCGTATCTCTATTGAGCTACAGCCAGGCATCTTCTTGCTTCCAGAATCTTTCATTAGCTTTCTAACTTGTCTGACTTTGTCCCATTTCTTTGTAGCAGCATAGAGATTTGAGACCAACGCAAGAACGCCAACATCGTCAGGTTGCAATTCAAGGATATTGTCTGCTATACTTTCTCCAAGCTCCAGCTTCTTGTTATTCAGACAGCCTGAAAGTAGAGCAACCCAAATGGCAACGGTTGGCTCAGCTTTCATTGATGTGAGCAGGTCACTGGCTTCTTCCACAAGACCGGAACGTGCTAAAAGATCAACTAGACAGACATAGTGTTTCTCAGCAGGTGTGATCTTGAAGTGATTAACCATGCGACCAAACCATAGTTTCCCTTCCTCCACAAGACCAGAATGGCTTAGAGCAGACAAAAGAGAAGCAAATGTGGCATGATCTGGTCTCATTCCAGTTTCGTTCATTTCTTGGAACAAAGTGAGCGCATCCTGGCCTCGTCCATGAGCACCACAACACGCAATCATGGCATTCCACAAGATCAAGTCTCTATCACTGATCATGTTGAAAAGCATCTGTGCACTTGCTAGGGAGCCGCATTTTGAGTACATATCAATGGCTGCTGTACCGAGGATACAATTAAAATCAAACCTCCTCACGATGAAACCATGTACTGACCTCCCTAGCTTCAAGAATCCAATATTTGAGCAAGCTAGCAGAGCACTAACAAGTGCTCCTGAGTCAGGCTGAATACCAGAAGCCTGCATATTTCTGAACAACCGAAGTGCCTCATCCGATTGCCCATTCTGTGCAAAACCTGAGATCATCGCGCTCCATGAGACATCATTCCGGTGCACCATCAGACCAAAAACTCGGCACGCCACATCAAGTAGTCCATTCTTTGCATACATATCCACGAGGCTTGTTGCAGTAACAACATCCATCCTCATTCCATGCCGTAAGAGATGCCCATGAACTGAAGCTCCCATTCGGACATTTCTGGCTGCTGTGCACGCTTGTATAACCCCAATCATGACCACCTCATCTCCCTTCACACCATCCTCCCTCATCCTCCTGTACATCTGAATCGCATCCAGTGGCTGTCCAGCACTCACGAAACCAGCAACCATGGTGCTCCAGGTGACGCGGTCCCTCCTCGGCATTCGGACGAACACCTTGACCGCGTCGCCCATGGCGCCCCATCTCGCGTAGAGGTGGAGCAGCGACGAGCAGACGAAGACGTCGTCCTTGTACCCGGCGTCGAACGCGCGGTCCCTGACGGACTCCCCGCCGCGAAGGTCCCCGAGGCGCGCGCACGCGGAGAGCGCGAGCGTGAAGGTGGTGCTGTCGGGGCGCGCGGCGGGCGGGAGCGCGCGGAAGACGCGGAGCGCGGATGCCGGGGAGCCGCGGCGGGAGTGCGCGGCGATGATGGCGTTCCACGCGGCGATGGAGGATGAGGCGGCGGTTGCGGTGAGGGTGGACTCCGCGGCGGCGAGGTCGCCAGCGCGGGCGTAGGCGGCGGCGAGCGAGGAGATGAGGGTGTGGGAGGCGGAGGAGGAGACGATGAGGAGGGCGTGGAGGCGGGCGAGGGTCCGGGCGGAGGCGGAGGCGGCGGCGGAGGAGGAGAGGAGGCGGCGCGGGTCGTCGAGGAAGACGGGGAGATGCATGTGCTTAGCGCCGGAACGAC
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| CDS seq | ATGCATCTCCCCGTCTTCCTCGACGACCCGCGCCGCCTCCTCTCCTCCTCCGCCGCCGCCTCCGCCTCCGCCCGGACCCTCGCCCGCCTCCACGCCCTCCTCATCGTCTCCTCCTCCGCCTCCCACACCCTCATCTCCTCGCTCGCCGCCGCCTACGCCCGCGCTGGCGACCTCGCCGCCGCGGAGTCCACCCTCACCGCAACCGCCGCCTCATCCTCCATCGCCGCGTGGAACGCCATCATCGCCGCGCACTCCCGCCGCGGCTCCCCGGCATCCGCGCTCCGCGTCTTCCGCGCGCTCCCGCCCGCCGCGCGCCCCGACAGCACCACCTTCACGCTCGCGCTCTCCGCGTGCGCGCGCCTCGGGGACCTTCGCGGCGGGGAGTCCGTCAGGGACCGCGCGTTCGACGCCGGGTACAAGGACGACGTCTTCGTCTGCTCGTCGCTGCTCCACCTCTACGCGAGATGGGGCGCCATGGGCGACGCGGTCAAGGTGTTCGTCCGAATGCCGAGGAGGGACCGCGTCACCTGGAGCACCATGGTTGCTGGTTTCGTGAGTGCTGGACAGCCACTGGATGCGATTCAGATGTACAGGAGGATGAGGGAGGATGGTGTGAAGGGAGATGAGGTGGTCATGATTGGGGTTATACAAGCGTGCACAGCAGCCAGAAATGTCCGAATGGGAGCTTCAGTTCATGGGCATCTCTTACGGCATGGAATGAGGATGGATGTTGTTACTGCAACAAGCCTCGTGGATATGTATGCAAAGAATGGACTACTTGATGTGGCGTGCCGAGTTTTTGGTCTGATGGTGCACCGGAATGATGTCTCATGGAGCGCGATGATCTCAGGTTTTGCACAGAATGGGCAATCGGATGAGGCACTTCGGTTGTTCAGAAATATGCAGGCTTCTGGTATTCAGCCTGACTCAGGAGCACTTGTTAGTGCTCTGCTAGCTTGCTCAAATATTGGATTCTTGAAGCTAGGGAGGTCAGTACATGGTTTCATCGTGAGGAGGTTTGATTTTAATTGTATCCTCGGTACAGCAGCCATTGATATGTACTCAAAATGCGGCTCCCTAGCAAGTGCACAGATGCTTTTCAACATGATCAGTGATAGAGACTTGATCTTGTGGAATGCCATGATTGCGTGTTGTGGTGCTCATGGACGAGGCCAGGATGCGCTCACTTTGTTCCAAGAAATGAACGAAACTGGAATGAGACCAGATCATGCCACATTTGCTTCTCTTTTGTCTGCTCTAAGCCATTCTGGTCTTGTGGAGGAAGGGAAACTATGGTTTGGTCGCATGGTTAATCACTTCAAGATCACACCTGCTGAGAAACACTATGTCTGTCTAGTTGATCTTTTAGCACGTTCCGGTCTTGTGGAAGAAGCCAGTGACCTGCTCACATCAATGAAAGCTGAGCCAACCGTTGCCATTTGGGTTGCTCTACTTTCAGGCTGTCTGAATAACAAGAAGCTGGAGCTTGGAGAAAGTATAGCAGACAATATCCTTGAATTGCAACCTGACGATGTTGGCGTTCTTGCGTTGGTCTCAAATCTCTATGCTGCTACAAAGAAATGGGACAAAGTCAGACAAGTTAGAAAGCTAATGAAAGATTCTGGAAGCAAGAAGATGCCTGGCTGTAGCTCAATAGAGATACGCGGAACACGCCACGTGTTCGTGATGGAAGACCAGAGCCATCCTCAGCGTGAAGAGATCGTAAGTAAGGTGGCAAAGCTTGATTTAGAGATGAGGAAGATGGGCTACATTCCGAGAACAGAGTTTGTGTACCACGATCTGGAGGAGGAAGTGAAGGAACAGCAGCTCAGCTACCACAGCGAGAGGCTGGCCATCGCCTTCGGTTTGCTGAACACAGGCCCAGGAACAAGGCTTGTGATCATAAAGAACCTCAGGGTCTGTGGTGATTGCCATGATGCCATCAAGTACATCTCGAAGATCGCGGACCGGGAGATCGTAGTGCGAGACGCCAAACGCTTCCACCATTTCAAAGACGGAGTCTGCTCCTGCAGAGATTACTGGTGA
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| Protein seq | MHLPVFLDDPRRLLSSSAAASASARTLARLHALLIVSSSASHTLISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAHSRRGSPASALRVFRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW |
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| Function | Putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [UniProtKB/Swiss-Prot:Q9LJR6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0540100 | OsNip_10t0540100-01 | Chr10 | 21058117 | 21061300 | - | RAP2018-11-26 | ||
| CDS seq | ATGCATCTCCCCGTCTTCCTCGACGACCCGCGCCGCCTCCTCTCCTCCTCCGCCGCCGCCTCCGCCTCCGCCCGGACCCTCGCCCGCCTCCACGCCCTCCTCATCGTCTCCTCCTCCGCCTCCCACACCCTCATCTCCTCGCTCGCCGCCGCCTACGCCCGCGCTGGCGACCTCGCCGCCGCGGAGTCCACCCTCACCGCAACCGCCGCCTCATCCTCCATCGCCGCGTGGAACGCCATCATCGCCGCGCACTCCCGCCGCGGCTCCCCGGCATCCGCGCTCCGCGTCTTCCGCGCGCTCCCGCCCGCCGCGCGCCCCGACAGCACCACCTTCACGCTCGCGCTCTCCGCGTGCGCGCGCCTCGGGGACCTTCGCGGCGGGGAGTCCGTCAGGGACCGCGCGTTCGACGCCGGGTACAAGGACGACGTCTTCGTCTGCTCGTCGCTGCTCCACCTCTACGCGAGATGGGGCGCCATGGGCGACGCGGTCAAGGTGTTCGTCCGAATGCCGAGGAGGGACCGCGTCACCTGGAGCACCATGGTTGCTGGTTTCGTGAGTGCTGGACAGCCACTGGATGCGATTCAGATGTACAGGAGGATGAGGGAGGATGGTGTGAAGGGAGATGAGGTGGTCATGATTGGGGTTATACAAGCGTGCACAGCAGCCAGAAATGTCCGAATGGGAGCTTCAGTTCATGGGCATCTCTTACGGCATGGAATGAGGATGGATGTTGTTACTGCAACAAGCCTCGTGGATATGTATGCAAAGAATGGACTACTTGATGTGGCGTGCCGAGTTTTTGGTCTGATGGTGCACCGGAATGATGTCTCATGGAGCGCGATGATCTCAGGTTTTGCACAGAATGGGCAATCGGATGAGGCACTTCGGTTGTTCAGAAATATGCAGGCTTCTGGTATTCAGCCTGACTCAGGAGCACTTGTTAGTGCTCTGCTAGCTTGCTCAAATATTGGATTCTTGAAGCTAGGGAGGTCAGTACATGGTTTCATCGTGAGGAGGTTTGATTTTAATTGTATCCTCGGTACAGCAGCCATTGATATGTACTCAAAATGCGGCTCCCTAGCAAGTGCACAGATGCTTTTCAACATGATCAGTGATAGAGACTTGATCTTGTGGAATGCCATGATTGCGTGTTGTGGTGCTCATGGACGAGGCCAGGATGCGCTCACTTTGTTCCAAGAAATGAACGAAACTGGAATGAGACCAGATCATGCCACATTTGCTTCTCTTTTGTCTGCTCTAAGCCATTCTGGTCTTGTGGAGGAAGGGAAACTATGGTTTGGTCGCATGGTTAATCACTTCAAGATCACACCTGCTGAGAAACACTATGTCTGTCTAGTTGATCTTTTAGCACGTTCCGGTCTTGTGGAAGAAGCCAGTGACCTGCTCACATCAATGAAAGCTGAGCCAACCGTTGCCATTTGGGTTGCTCTACTTTCAGGCTGTCTGAATAACAAGAAGCTGGAGCTTGGAGAAAGTATAGCAGACAATATCCTTGAATTGCAACCTGACGATGTTGGCGTTCTTGCGTTGGTCTCAAATCTCTATGCTGCTACAAAGAAATGGGACAAAGTCAGACAAGTTAGAAAGCTAATGAAAGATTCTGGAAGCAAGAAGATGCCTGGCTGTAGCTCAATAGAGATACGCGGAACACGCCACGTGTTCGTGATGGAAGACCAGAGCCATCCTCAGCGTGAAGAGATCGTAAGTAAGGTGGCAAAGCTTGATTTAGAGATGAGGAAGATGGGCTACATTCCGAGAACAGAGTTTGTGTACCACGATCTGGAGGAGGAAGTGAAGGAACAGCAGCTCAGCTACCACAGCGAGAGGCTGGCCATCGCCTTCGGTTTGCTGAACACAGGCCCAGGAACAAGGCTTGTGATCATAAAGAACCTCAGGGTCTGTGGTGATTGCCATGATGCCATCAAGTACATCTCGAAGATCGCGGACCGGGAGATCGTAGTGCGAGACGCCAAACGCTTCCACCATTTCAAAGACGGAGTCTGCTCCTGCAGAGATTACTGGTGA
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| Protein seq | MHLPVFLDDPRRLLSSSAAASASARTLARLHALLIVSSSASHTLISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAHSRRGSPASALRVFRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.047922 | 0.892399 | 0.607861 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0584700 | SBH | 0.258627 | 0.265228 | 0.632115 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g39460 | RBH | 0.917598 | 0.600213 | 0.443190 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0540100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0018590 | RBH | 0.303641 | 1.445802 | 2.271267 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018970 | RBH | 0.239125 | 0.865876 | 1.590282 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0018370 | RBH | 0.677893 | 1.431049 | 4.506678 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0018920 | RBH | 0.078357 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0018660 | RBH | 0.000000 | 0.000000 | 4.656379 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0306000 | SBH | 5.72211 | 11.8103 | 17.344778 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0018520 | RBH | 0.116661 | 0.060486 | 0.334658 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0372800 | RBH | 1.5966635 | 1.9996775 | 3.016504 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0018280 | RBH | 0.037183 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0018220 | RBH | 0.385144 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018740 | RBH | 7.464812 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0018320 | RBH | 0.180135 | 0.0 | 0.313804 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018840 | RBH | 0.142592 | 1.087621 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G018580 | RBH | 0.116262 | 0.0 | 1.284954 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018650 | RBH | 0.329575 | 0.806985 | 4.412265 |
